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| Mutant Information |
|---|
| Mutant Name | FN2996-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2996-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 223639 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g003200 |
| SBS | Chr1 | 13244008 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 17699648 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 44165630 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 9406228 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9801819 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12481829 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21228577 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 21230021 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 27837363 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28683162 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 901290 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6818899 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23225799 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 35402543 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37529159 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19043417 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 25304192 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13189273 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 17599860 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27243305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29605310 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 14510314 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24261268 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13088101 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9807605 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 9871134 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 1354284 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 22795119 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 1735268 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22120725 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25569602 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9551032 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23784468 | T-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 3518048 | 3518049 | 1 | |
| Deletion | Chr4 | 3797017 | 3797023 | 6 | |
| Deletion | Chr1 | 8041001 | 8056000 | 14999 | 4 |
| Deletion | Chr7 | 8184211 | 8184218 | 7 | OsKitaake07g089400 |
| Deletion | Chr10 | 8407264 | 8407265 | 1 | |
| Deletion | Chr7 | 8433695 | 8433702 | 7 | |
| Deletion | Chr6 | 12942726 | 12942727 | 1 | |
| Deletion | Chr9 | 15574001 | 15598000 | 23999 | 3 |
| Deletion | Chr1 | 17183686 | 17183851 | 165 | |
| Deletion | Chr4 | 21395488 | 21395490 | 2 | |
| Deletion | Chr1 | 22860094 | 22860095 | 1 | |
| Deletion | Chr5 | 27081772 | 27081783 | 11 | |
| Deletion | Chr4 | 28692313 | 28692317 | 4 | |
| Deletion | Chr1 | 36315543 | 36315550 | 7 | |
| Deletion | Chr1 | 37872354 | 37872359 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 1587555 | 1587558 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 20210314 | 21174038 | |
| Inversion | Chr7 | 23910384 | 24257403 | OsKitaake07g210900 |
| Inversion | Chr7 | 23910426 | 24257488 | OsKitaake07g210900 |