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Mutant Information

Mutant Name	FN3014-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3014-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	8280963	G-A	Hetero	INTRON
SBS	Chr2	22235710	C-T	Hetero	INTERGENIC
SBS	Chr3	6731319	A-G	Hetero	INTRON
SBS	Chr3	13242515	G-C	Homo	INTERGENIC
SBS	Chr3	13242516	T-C	Homo	INTERGENIC
SBS	Chr3	13783490	T-G	Homo	INTERGENIC
SBS	Chr3	20160876	A-T	Homo	INTERGENIC
SBS	Chr3	24247358	C-T	Homo	INTERGENIC
SBS	Chr3	34627261	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr4	6920746	T-G	Hetero	INTERGENIC
SBS	Chr4	7846208	A-G	Hetero	INTERGENIC
SBS	Chr4	8452711	A-G	Hetero	INTERGENIC
SBS	Chr4	9747731	T-A	Hetero	INTERGENIC
SBS	Chr4	9760264	T-C	Hetero	INTERGENIC
SBS	Chr4	11744649	C-A	Hetero	INTERGENIC
SBS	Chr4	13288604	G-A	Hetero	INTERGENIC
SBS	Chr4	28290497	C-T	Homo	INTERGENIC
SBS	Chr5	8121291	G-C	Homo	INTERGENIC
SBS	Chr5	13453168	T-C	Homo	INTERGENIC
SBS	Chr5	25091619	A-C	Hetero	INTERGENIC
SBS	Chr6	11040119	C-T	Hetero	INTERGENIC
SBS	Chr6	20232442	G-A	Hetero	INTERGENIC
SBS	Chr7	4771398	G-A	Hetero	INTERGENIC
SBS	Chr7	6233756	C-G	Hetero	INTERGENIC
SBS	Chr7	10337789	G-T	Hetero	INTERGENIC
SBS	Chr7	20060629	T-C	Hetero	INTERGENIC
SBS	Chr7	20601879	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g168900
SBS	Chr7	21883167	C-T	Homo	INTERGENIC
SBS	Chr7	28515760	A-T	Homo	INTERGENIC
SBS	Chr8	19175477	T-C	Homo	INTERGENIC
SBS	Chr9	3107766	C-T	Hetero	INTERGENIC
SBS	Chr9	11137778	C-T	Hetero	INTERGENIC
SBS	Chr9	18003402	G-A	Homo	INTERGENIC
SBS	Chr10	7171662	G-C	Hetero	INTERGENIC
SBS	Chr10	9536872	T-C	Hetero	INTERGENIC
SBS	Chr10	9596552	T-A	Hetero	INTERGENIC
SBS	Chr10	13394121	T-A	Hetero	INTERGENIC
SBS	Chr10	13394122	C-A	Hetero	INTERGENIC
SBS	Chr10	20598736	C-T	Homo	INTERGENIC
SBS	Chr10	21296961	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	21693378	G-A	Homo	INTRON
SBS	Chr11	430919	A-T	Hetero	INTERGENIC
SBS	Chr11	24253786	C-T	Homo	INTERGENIC
SBS	Chr11	26404130	C-A	Homo	INTERGENIC
SBS	Chr11	26404132	A-G	Homo	INTERGENIC
SBS	Chr12	5966302	C-T	Homo	INTERGENIC
SBS	Chr12	20729457	T-C	Homo	INTRON

Deletions: 226

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	126001	138000	11999
Deletion	Chr12	131846	131858	12	OsKitaake12g001700
Deletion	Chr9	346001	366000	19999
Deletion	Chr1	390725	390738	13
Deletion	Chr12	639135	639137	2
Deletion	Chr9	640001	659000	18999	OsKitaake09g004500
Deletion	Chr9	719001	739000	19999
Deletion	Chr4	800001	821000	20999	2
Deletion	Chr12	807001	825000	17999	2
Deletion	Chr11	962001	991000	28999	5
Deletion	Chr9	1037001	1053000	15999
Deletion	Chr11	1147001	1175000	27999	2
Deletion	Chr9	1153001	1167000	13999	OsKitaake09g006900
Deletion	Chr8	1307001	1325000	17999	2
Deletion	Chr4	1478001	1505000	26999
Deletion	Chr4	1628001	1648000	19999
Deletion	Chr9	1645001	1668000	22999
Deletion	Chr12	1661789	1661790	1
Deletion	Chr8	1741001	1761000	19999
Deletion	Chr4	2090001	2102000	11999
Deletion	Chr9	2153001	2166000	12999
Deletion	Chr9	2188001	2200000	11999	OsKitaake09g011400
Deletion	Chr5	2288001	2299000	10999
Deletion	Chr3	2949439	2949446	7	OsKitaake03g041600
Deletion	Chr2	3138001	3156000	17999	4
Deletion	Chr10	3782001	3800000	17999	OsKitaake10g028900
Deletion	Chr1	3834001	3867000	32999
Deletion	Chr2	3961001	3987000	25999	OsKitaake02g056720
Deletion	Chr9	4247001	4262000	14999
Deletion	Chr4	4268001	4305000	36999	2
Deletion	Chr10	4639001	4654000	14999	OsKitaake10g034300
Deletion	Chr5	4798001	4813000	14999
Deletion	Chr11	5114001	5156000	41999	6
Deletion	Chr9	5123001	5158000	34999
Deletion	Chr9	5384001	5402000	17999	2
Deletion	Chr11	5664001	5684000	19999	5
Deletion	Chr11	5774001	5793000	18999	2
Deletion	Chr4	5871001	5893000	21999	2
Deletion	Chr8	5882001	5901000	18999	OsKitaake08g064100
Deletion	Chr2	6059001	6070000	10999
Deletion	Chr4	6090001	6116000	25999	OsKitaake04g030500
Deletion	Chr4	6203001	6226000	22999
Deletion	Chr2	6378001	6418000	39999	3
Deletion	Chr12	6472001	6498000	25999	3
Deletion	Chr4	6524001	6558000	33999	OsKitaake04g033200
Deletion	Chr3	6814001	6830000	15999	2
Deletion	Chr5	6882001	6907000	24999	3
Deletion	Chr9	6964001	6985000	20999	3
Deletion	Chr10	7051001	7069000	17999	3
Deletion	Chr2	7145869	7145872	3
Deletion	Chr4	7265001	7287000	21999
Deletion	Chr9	7627001	7643000	15999
Deletion	Chr12	7631001	7666000	34999	OsKitaake12g083000
Deletion	Chr10	7721001	7762000	40999	2
Deletion	Chr10	7780001	7817000	36999	OsKitaake10g049600
Deletion	Chr7	8006001	8020000	13999
Deletion	Chr3	8566898	8566900	2
Deletion	Chr1	8644001	8661000	16999	OsKitaake01g108400
Deletion	Chr7	8710001	8728000	17999	2
Deletion	Chr12	8746001	8758000	11999
Deletion	Chr7	8751001	8770000	18999	OsKitaake07g093000
Deletion	Chr11	8758001	8787000	28999
Deletion	Chr6	8759001	8770000	10999
Deletion	Chr5	8767001	8789000	21999
Deletion	Chr10	8908001	8917000	8999
Deletion	Chr11	9022001	9035000	12999
Deletion	Chr7	9291001	9318000	26999	OsKitaake07g095900
Deletion	Chr12	9466001	9492000	25999	2
Deletion	Chr5	9576001	9590000	13999
Deletion	Chr4	9606288	9606296	8
Deletion	Chr8	9652001	9669000	16999
Deletion	Chr8	9765001	9784000	18999
Deletion	Chr2	9869001	9885000	15999
Deletion	Chr12	9936001	9957000	20999
Deletion	Chr11	10029001	10048000	18999	4
Deletion	Chr9	10114001	10131000	16999
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr6	10495001	10523000	27999	4
Deletion	Chr12	10559001	10571000	11999	2
Deletion	Chr12	10853001	10868000	14999	2
Deletion	Chr6	10859001	10887000	27999	OsKitaake06g121250
Deletion	Chr11	10981001	11011000	29999
Deletion	Chr4	11179001	11202000	22999
Deletion	Chr12	11264001	11282000	17999
Deletion	Chr8	11278001	11301000	22999
Deletion	Chr6	11369001	11382000	12999
Deletion	Chr9	11371001	11384000	12999	2
Deletion	Chr5	11380001	11399000	18999	6
Deletion	Chr12	11445001	11465000	19999	OsKitaake12g102401
Deletion	Chr4	11541001	11569000	27999
Deletion	Chr1	11560001	11574000	13999
Deletion	Chr6	11564001	11618000	53999
Deletion	Chr11	11632001	11657000	24999
Deletion	Chr3	11672001	11693000	20999	3
Deletion	Chr12	11896001	11913000	16999	2
Deletion	Chr2	11932001	11949000	16999
Deletion	Chr5	11935001	12041000	105999	4
Deletion	Chr6	12093001	12109000	15999	OsKitaake06g130600
Deletion	Chr6	12145001	12161000	15999
Deletion	Chr6	12247001	12268000	20999	2
Deletion	Chr10	12301892	12301894	2
Deletion	Chr2	12337001	12350000	12999
Deletion	Chr6	12374001	12408000	33999	2
Deletion	Chr1	12882981	12882982	1
Deletion	Chr1	12891001	13026000	134999	12
Deletion	Chr2	12935001	12950000	14999	2
Deletion	Chr9	12993001	13016000	22999	OsKitaake09g086300
Deletion	Chr3	12998001	13015000	16999
Deletion	Chr5	13047001	13082000	34999	6
Deletion	Chr8	13237001	13269000	31999	OsKitaake08g110140
Deletion	Chr1	13276340	13276348	8
Deletion	Chr1	13422001	13441000	18999	OsKitaake01g156400
Deletion	Chr10	13462001	13479000	16999	OsKitaake10g080900
Deletion	Chr1	13463063	13463064	1
Deletion	Chr6	13506001	13521000	14999
Deletion	Chr4	13531001	13551000	19999
Deletion	Chr11	13570001	13604000	33999	2
Deletion	Chr4	13674001	13688000	13999
Deletion	Chr5	13897001	13905000	7999
Deletion	Chr2	14492001	14521000	28999	OsKitaake02g156550
Deletion	Chr3	14703001	14725000	21999	4
Deletion	Chr8	14711001	14732000	20999
Deletion	Chr2	14830001	14843000	12999
Deletion	Chr11	14834001	14860000	25999	OsKitaake11g122600
Deletion	Chr1	14845001	14873000	27999	3
Deletion	Chr4	14871001	14900000	28999	2
Deletion	Chr8	15022001	15036000	13999	OsKitaake08g117500
Deletion	Chr2	15170001	15192000	21999	2
Deletion	Chr9	15505001	15521000	15999
Deletion	Chr5	15746001	15762000	15999	OsKitaake05g121300
Deletion	Chr6	15772608	15772621	13
Deletion	Chr5	15821001	15838000	16999
Deletion	Chr12	16007001	16063000	55999	3
Deletion	Chr8	16062001	16080000	17999	OsKitaake08g124000
Deletion	Chr2	16067001	16091000	23999	OsKitaake02g166300
Deletion	Chr12	16409001	16420000	10999	OsKitaake12g124600
Deletion	Chr12	16561001	16589000	27999	OsKitaake12g124900
Deletion	Chr2	16576887	16576893	6
Deletion	Chr2	16636537	16636538	1
Deletion	Chr1	16652001	16673000	20999	2
Deletion	Chr6	16923001	16947000	23999
Deletion	Chr1	16976001	16995000	18999
Deletion	Chr2	17275001	17294000	18999
Deletion	Chr6	17288001	17316000	27999	2
Deletion	Chr10	17315001	17331000	15999
Deletion	Chr2	17354001	17374000	19999	4
Deletion	Chr6	17398001	17435000	36999	5
Deletion	Chr2	17400001	17418000	17999	OsKitaake02g175100
Deletion	Chr3	17549001	17563000	13999	OsKitaake03g216000
Deletion	Chr4	17716001	17738000	21999	2
Deletion	Chr1	17720001	17754000	33999	OsKitaake01g180600
Deletion	Chr6	17729001	17751000	21999	OsKitaake06g163600
Deletion	Chr4	17787001	17805000	17999	OsKitaake04g089100
Deletion	Chr2	18051001	18077000	25999	OsKitaake02g179900
Deletion	Chr2	18456001	18479000	22999	3
Deletion	Chr3	18475001	18492000	16999	OsKitaake03g224050
Deletion	Chr10	18566001	18595000	28999	OsKitaake10g132100
Deletion	Chr1	18631001	18653000	21999	2
Deletion	Chr3	18678001	18712000	33999	OsKitaake03g225500
Deletion	Chr5	18709001	18728000	18999
Deletion	Chr9	19052625	19052627	2
Deletion	Chr12	19101001	19121000	19999	OsKitaake12g141900
Deletion	Chr8	19249001	19270000	20999
Deletion	Chr3	19423001	19461000	37999
Deletion	Chr8	19439001	19463000	23999	4
Deletion	Chr1	19498001	19525000	26999
Deletion	Chr5	19602001	19624000	21999
Deletion	Chr1	19776001	19805000	28999	2
Deletion	Chr1	20016001	20038000	21999
Deletion	Chr11	20201001	20216000	14999
Deletion	Chr8	20373001	20384000	10999	OsKitaake08g150900
Deletion	Chr3	20501001	20508000	6999
Deletion	Chr1	20884001	20904000	19999
Deletion	Chr1	20960001	20989000	28999	2
Deletion	Chr1	21154001	21174000	19999
Deletion	Chr11	21226001	21239000	12999
Deletion	Chr12	21244001	21284000	39999	OsKitaake12g167050
Deletion	Chr11	21306001	21325000	18999	OsKitaake11g168700
Deletion	Chr11	21599001	21615000	15999	2
Deletion	Chr2	21624001	21639000	14999
Deletion	Chr11	21749001	21761000	11999
Deletion	Chr8	21926001	21958000	31999	2
Deletion	Chr10	21942001	21955000	12999	2
Deletion	Chr9	22265001	22327000	61999	9
Deletion	Chr7	22581001	22618000	36999	7
Deletion	Chr3	23016001	23043000	26999	4
Deletion	Chr11	23024001	23055000	30999	2
Deletion	Chr5	23823001	23837000	13999	2
Deletion	Chr1	24186001	24198000	11999	4
Deletion	Chr8	24392001	24412000	19999
Deletion	Chr5	24922638	24922643	5
Deletion	Chr2	24938001	24953000	14999
Deletion	Chr6	25040001	25071000	30999	2
Deletion	Chr5	25350001	25365000	14999
Deletion	Chr11	26207001	26237000	29999	3
Deletion	Chr7	26526001	26560000	33999	2
Deletion	Chr8	26625001	26636000	10999	OsKitaake08g214600
Deletion	Chr3	26630001	26655000	24999
Deletion	Chr6	26649001	26663000	13999
Deletion	Chr11	26886001	26902000	15999	OsKitaake11g218600
Deletion	Chr8	27137979	27137981	2
Deletion	Chr6	27240001	27257000	16999	2
Deletion	Chr4	27251001	27268000	16999	OsKitaake04g198500
Deletion	Chr7	27330001	27342000	11999
Deletion	Chr7	27728001	27742000	13999	OsKitaake07g258800
Deletion	Chr6	28443001	28456000	12999	OsKitaake06g260600
Deletion	Chr2	28660001	28681000	20999	2
Deletion	Chr5	28754621	28754631	10
Deletion	Chr3	29361001	29381000	19999	2
Deletion	Chr3	29810001	29832000	21999	3
Deletion	Chr4	30711001	30726000	14999	2
Deletion	Chr2	31034001	31048000	13999
Deletion	Chr2	32012080	32012088	8
Deletion	Chr1	32026001	32047000	20999	OsKitaake01g322800
Deletion	Chr4	32043001	32056000	12999
Deletion	Chr3	33499001	33515000	15999	OsKitaake03g358900
Deletion	Chr1	33685001	33703000	17999	5
Deletion	Chr3	34581602	34581603	1	OsKitaake03g375700
Deletion	Chr4	36007001	36019000	11999	4
Deletion	Chr1	37406352	37406355	3
Deletion	Chr3	37430001	37448000	17999
Deletion	Chr1	38123001	38144000	20999	5
Deletion	Chr1	39617001	39629000	11999
Deletion	Chr1	40409001	40433000	23999	3
Deletion	Chr1	42315001	42344000	28999	2
Deletion	Chr1	43173001	43184000	10999

Insertions: 5

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	354170	354172	1
Insertion	Chr2	9520563	9520566	2
Insertion	Chr5	6785620	6785625	4
Insertion	Chr7	25699500	25699505	4
Insertion	Chr8	21461617	21461620	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	203719	596631
Inversion	Chr12	203734	596634
Inversion	Chr12	20396881	20791837
Inversion	Chr12	20396891	20791869

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes