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Mutant Information

Mutant Name	FN3015-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3015-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1309052	G-A	Homo	INTERGENIC
SBS	Chr1	12131985	C-T	Hetero	INTERGENIC
SBS	Chr1	12901982	T-A	Hetero	INTERGENIC
SBS	Chr1	12928092	G-T	Hetero	INTERGENIC
SBS	Chr1	12928094	C-T	Hetero	INTERGENIC
SBS	Chr1	17701824	G-A	Hetero	INTERGENIC
SBS	Chr1	22477706	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g214800
SBS	Chr1	31239699	C-T	Homo	INTERGENIC
SBS	Chr1	34524736	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	38970607	A-G	Homo	INTERGENIC
SBS	Chr2	1321229	G-A	Hetero	INTERGENIC
SBS	Chr2	3926564	C-T	Hetero	INTERGENIC
SBS	Chr2	31061724	A-C	Hetero	INTERGENIC
SBS	Chr3	8428915	C-T	Hetero	INTERGENIC
SBS	Chr3	8698994	G-A	Hetero	INTERGENIC
SBS	Chr3	32147983	G-A	Hetero	INTERGENIC
SBS	Chr3	33085017	A-T	Hetero	INTERGENIC
SBS	Chr3	34076993	A-T	Hetero	INTERGENIC
SBS	Chr4	16524505	T-C	Hetero	INTERGENIC
SBS	Chr4	29186827	G-C	Homo	INTERGENIC
SBS	Chr5	7544731	G-C	Hetero	INTRON
SBS	Chr6	5026237	C-T	Hetero	INTERGENIC
SBS	Chr6	15303775	A-G	Homo	INTERGENIC
SBS	Chr6	23032768	G-A	Homo	INTERGENIC
SBS	Chr6	26909487	A-G	Homo	INTERGENIC
SBS	Chr6	29246320	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	18902458	C-T	Homo	INTERGENIC
SBS	Chr7	26892792	C-T	Hetero	INTRON
SBS	Chr7	27248902	C-T	Hetero	INTERGENIC
SBS	Chr7	29071384	C-T	Hetero	INTERGENIC
SBS	Chr8	24895041	A-C	Hetero	INTERGENIC
SBS	Chr10	619956	A-G	Hetero	INTERGENIC
SBS	Chr10	759869	A-G	Hetero	INTERGENIC
SBS	Chr10	759880	A-G	Hetero	INTERGENIC
SBS	Chr10	16200077	T-A	Hetero	INTERGENIC
SBS	Chr11	10606907	G-A	Homo	INTERGENIC
SBS	Chr12	2267064	C-T	Hetero	INTERGENIC
SBS	Chr12	14168812	T-C	Hetero	INTERGENIC
SBS	Chr12	24844672	G-A	Hetero	INTERGENIC

Deletions: 132

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	718001	733000	14999
Deletion	Chr4	806001	819000	12999	2
Deletion	Chr11	960001	990000	29999	5
Deletion	Chr12	1186001	1199000	12999
Deletion	Chr4	1633001	1644000	10999
Deletion	Chr2	3142001	3155000	12999	3
Deletion	Chr6	3777001	3818000	40999	2
Deletion	Chr1	3842001	3863000	20999
Deletion	Chr2	3963001	3990000	26999	OsKitaake02g056720
Deletion	Chr4	4271001	4302000	30999	2
Deletion	Chr11	4446001	4460000	13999	2
Deletion	Chr9	4789001	4805000	15999
Deletion	Chr7	4796001	4811000	14999	2
Deletion	Chr4	5673001	5699000	25999	OsKitaake04g027900
Deletion	Chr8	5887001	5900000	12999
Deletion	Chr7	6045001	6063000	17999
Deletion	Chr7	6383001	6411000	27999	OsKitaake07g074500
Deletion	Chr10	6467001	6488000	20999	5
Deletion	Chr12	6470001	6490000	19999	2
Deletion	Chr10	6728001	6749000	20999	2
Deletion	Chr9	6963001	6993000	29999	4
Deletion	Chr5	7002001	7025000	22999	2
Deletion	Chr7	7516001	7531000	14999	5
Deletion	Chr9	7626001	7644000	17999
Deletion	Chr12	7635001	7665000	29999	OsKitaake12g083000
Deletion	Chr12	8245540	8245545	5
Deletion	Chr4	8336001	8353000	16999
Deletion	Chr7	8506001	8532000	25999	2
Deletion	Chr9	8730001	8748000	17999
Deletion	Chr11	8762001	8778000	15999
Deletion	Chr7	9295001	9313000	17999
Deletion	Chr5	9385001	9410000	24999	OsKitaake05g087100
Deletion	Chr4	9526001	9556000	29999	OsKitaake04g049400
Deletion	Chr1	9576712	9576713	1
Deletion	Chr5	9579001	9594000	14999	OsKitaake05g088200
Deletion	Chr12	9941001	9958000	16999
Deletion	Chr5	10127001	10159000	31999
Deletion	Chr7	10258001	10286000	27999	OsKitaake07g100700
Deletion	Chr11	10306001	10332000	25999
Deletion	Chr11	10619001	10661000	41999	5
Deletion	Chr12	10849001	10865000	15999	4
Deletion	Chr6	10865001	10890000	24999	OsKitaake06g121250
Deletion	Chr7	10876001	10897000	20999	2
Deletion	Chr4	11181001	11199000	17999
Deletion	Chr4	11271001	11302000	30999
Deletion	Chr8	11277001	11297000	19999
Deletion	Chr12	11380001	11408000	27999
Deletion	Chr4	11439001	11459000	19999
Deletion	Chr6	11574001	11608000	33999
Deletion	Chr11	11628001	11654000	25999
Deletion	Chr8	11856001	11875000	18999	OsKitaake08g104200
Deletion	Chr7	11928001	11957000	28999
Deletion	Chr1	12164001	12182000	17999
Deletion	Chr1	12218001	12230000	11999	2
Deletion	Chr6	12540001	12560000	19999	2
Deletion	Chr5	12641001	12696000	54999	OsKitaake05g098900
Deletion	Chr11	12830001	12846000	15999
Deletion	Chr5	13049001	13075000	25999	6
Deletion	Chr6	13321001	13338000	16999	OsKitaake06g140800
Deletion	Chr11	13572001	13606000	33999	2
Deletion	Chr2	13706001	13740000	33999	2
Deletion	Chr12	13801001	13836000	34999	4
Deletion	Chr8	13873001	13888000	14999
Deletion	Chr11	13927001	13943000	15999	OsKitaake11g117000
Deletion	Chr4	14016001	14030000	13999	OsKitaake04g067250
Deletion	Chr5	14018001	14027000	8999	OsKitaake05g108300
Deletion	Chr11	14123601	14123603	2
Deletion	Chr7	14176001	14190000	13999	OsKitaake07g122500
Deletion	Chr6	14699001	14715000	15999	OsKitaake06g149300
Deletion	Chr3	14712001	14720000	7999	3
Deletion	Chr8	14715001	14729000	13999
Deletion	Chr9	14811001	14834000	22999	OsKitaake09g101500
Deletion	Chr11	14833001	14860000	26999	OsKitaake11g122600
Deletion	Chr1	14849001	14874000	24999	3
Deletion	Chr4	14875001	14907000	31999	2
Deletion	Chr12	14911001	14931000	19999	OsKitaake12g118100
Deletion	Chr2	15173001	15193000	19999	OsKitaake02g158700
Deletion	Chr4	15199001	15217000	17999
Deletion	Chr5	15561001	15576000	14999	3
Deletion	Chr12	16008001	16058000	49999	3
Deletion	Chr8	16064001	16073000	8999
Deletion	Chr9	16296500	16296502	2
Deletion	Chr6	16447001	16462000	14999
Deletion	Chr5	16670001	16695000	24999	OsKitaake05g127500
Deletion	Chr11	16838001	16873000	34999	2
Deletion	Chr1	16980001	16992000	11999
Deletion	Chr1	17047001	17089000	41999
Deletion	Chr3	17550001	17571000	20999	OsKitaake03g216000
Deletion	Chr2	17832001	17848000	15999
Deletion	Chr1	18016001	18039000	22999
Deletion	Chr8	18067001	18118000	50999	3
Deletion	Chr10	18573001	18590000	16999
Deletion	Chr3	18681001	18710000	28999	OsKitaake03g225500
Deletion	Chr12	19096001	19116000	19999
Deletion	Chr1	19493001	19516000	22999
Deletion	Chr6	19697001	19712000	14999	OsKitaake06g177000
Deletion	Chr3	19748001	19768000	19999	OsKitaake03g229200
Deletion	Chr1	19781001	19794000	12999
Deletion	Chr6	19965001	19984000	18999
Deletion	Chr1	20535001	20574000	38999	5
Deletion	Chr1	20968001	20980000	11999	2
Deletion	Chr3	21225001	21248000	22999	2
Deletion	Chr12	21250001	21276000	25999
Deletion	Chr2	21623001	21640000	16999
Deletion	Chr6	21848001	21860000	11999
Deletion	Chr6	21974461	21974479	18
Deletion	Chr9	22264001	22313000	48999	7
Deletion	Chr7	22588001	22612000	23999	7
Deletion	Chr11	23020001	23061000	40999	2
Deletion	Chr8	23536001	23552000	15999
Deletion	Chr11	23575001	23595000	19999	2
Deletion	Chr3	24775001	24803000	27999
Deletion	Chr6	25046001	25091000	44999	OsKitaake06g222100
Deletion	Chr5	25337001	25366000	28999	5
Deletion	Chr2	25538001	25580000	41999	5
Deletion	Chr11	25563001	25593000	29999	OsKitaake11g206200
Deletion	Chr8	25573001	25590000	16999	4
Deletion	Chr12	25609001	25628000	18999	3
Deletion	Chr11	26215001	26232000	16999	OsKitaake11g211700
Deletion	Chr5	26341001	26362000	20999	3
Deletion	Chr7	26517001	26560000	42999	4
Deletion	Chr5	27096001	27120000	23999	6
Deletion	Chr4	27253001	27268000	14999	OsKitaake04g198500
Deletion	Chr3	29363001	29376000	12999	OsKitaake03g306300
Deletion	Chr3	29813001	29829000	15999	2
Deletion	Chr3	31270001	31301000	30999	6
Deletion	Chr4	34144001	34165000	20999
Deletion	Chr4	34538376	34538382	6
Deletion	Chr2	34964170	34964181	11
Deletion	Chr1	36857001	36881000	23999	5
Deletion	Chr1	39436394	39436396	2
Deletion	Chr1	40411001	40427000	15999	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr4	32016344	32016347	2
Insertion	Chr5	5510289	5510292	2
Insertion	Chr5	5555852	5555854	1
Insertion	Chr7	18902468	18902473	4

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1269072	1520256	OsKitaake02g019400
Inversion	Chr2	1269081	1520262	OsKitaake02g019400
Inversion	Chr6	23900658	24006233	OsKitaake06g211500
Inversion	Chr7	26521058	27338015	OsKitaake07g245300
Inversion	Chr7	26524326	27354497
Inversion	Chr2	30271485	30542157	OsKitaake02g311800

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	12860402	Chr1	16224172
Translocation	Chr2	12930598	Chr1	39681290	OsKitaake02g144500
Translocation	Chr2	12930691	Chr1	39681288	OsKitaake02g144500
Translocation	Chr10	17912731	Chr2	8550726
Translocation	Chr10	17912734	Chr2	8549928
Translocation	Chr6	22940890	Chr1	16224181	OsKitaake06g202700
Translocation	Chr6	22941543	Chr3	12869327	OsKitaake06g202700
Translocation	Chr6	23900661	Chr2	34155799	OsKitaake06g211500
Translocation	Chr6	24006234	Chr2	34144580

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Gene Affected

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