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Mutant Information

Mutant Name	FN3016-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3016-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3127958	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g040700
SBS	Chr1	8398925	G-T	Hetero	INTERGENIC
SBS	Chr1	30277828	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	34462283	T-A	Hetero	INTERGENIC
SBS	Chr1	35751074	C-T	Hetero	INTRON
SBS	Chr1	40760047	T-A	Homo	INTERGENIC
SBS	Chr2	90930	C-T	Homo	INTERGENIC
SBS	Chr2	19337509	T-A	Hetero	INTERGENIC
SBS	Chr2	23244897	G-A	Hetero	INTERGENIC
SBS	Chr2	33994056	C-T	Homo	INTERGENIC
SBS	Chr6	14436944	T-A	Hetero	INTERGENIC
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr6	17081937	G-A	Hetero	INTERGENIC
SBS	Chr7	5838152	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	7422101	T-A	Hetero	INTERGENIC
SBS	Chr8	6693516	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	6693687	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	12570123	C-T	Hetero	INTERGENIC
SBS	Chr8	18322849	T-C	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr9	22449595	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g203900
SBS	Chr10	10799376	T-C	Hetero	INTERGENIC
SBS	Chr10	12779176	A-T	Hetero	INTERGENIC
SBS	Chr10	12779177	C-T	Hetero	INTERGENIC
SBS	Chr10	17845137	C-T	Hetero	INTERGENIC
SBS	Chr10	18605288	T-G	Hetero	INTRON
SBS	Chr11	9373305	C-T	Hetero	INTRON
SBS	Chr11	10190428	C-T	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	15041470	A-T	Hetero	INTERGENIC
SBS	Chr11	15041472	C-T	Hetero	INTERGENIC
SBS	Chr11	27408715	T-A	Hetero	INTERGENIC
SBS	Chr12	15620195	A-C	Homo	INTERGENIC

Deletions: 43

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1187001	1228000	40999	5
Deletion	Chr11	2038589	2038597	8
Deletion	Chr11	3575079	3575089	10
Deletion	Chr10	4199001	4223000	23999	OsKitaake10g032100
Deletion	Chr11	4887001	4910000	22999	OsKitaake11g062701
Deletion	Chr11	5772001	5800000	27999	4
Deletion	Chr10	6725001	6747000	21999	3
Deletion	Chr3	7675001	7698000	22999	5
Deletion	Chr8	7847001	7909000	61999	OsKitaake08g072300
Deletion	Chr5	9375001	9402000	26999
Deletion	Chr4	9521001	9561000	39999	2
Deletion	Chr10	9547001	9636000	88999	5
Deletion	Chr7	9589001	9605000	15999
Deletion	Chr1	9728266	9728279	13
Deletion	Chr9	10591001	10630000	38999	3
Deletion	Chr3	11223001	11257000	33999	2
Deletion	Chr5	11944001	12048000	103999	3
Deletion	Chr7	11984659	11984660	1
Deletion	Chr2	12336001	12350000	13999
Deletion	Chr3	12619201	12619202	1	OsKitaake03g170300
Deletion	Chr11	13571001	13601000	29999	2
Deletion	Chr7	14454001	14473000	18999
Deletion	Chr12	14705065	14705078	13
Deletion	Chr2	15162001	15197000	34999	2
Deletion	Chr7	15809001	15836000	26999	3
Deletion	Chr11	16715001	16729000	13999
Deletion	Chr12	17830858	17830867	9
Deletion	Chr5	19600001	19626000	25999
Deletion	Chr1	19770001	19798000	27999	OsKitaake01g196800
Deletion	Chr7	20389001	20401000	11999
Deletion	Chr3	21206001	21250000	43999	2
Deletion	Chr5	21915001	22012000	96999	13
Deletion	Chr9	22272001	22309000	36999	5
Deletion	Chr2	23048001	23130000	81999	10
Deletion	Chr8	23651001	23673000	21999	5
Deletion	Chr6	25043001	25090000	46999	OsKitaake06g222100
Deletion	Chr3	27503038	27503040	2
Deletion	Chr7	28616001	28654000	37999	4
Deletion	Chr3	28661016	28661017	1
Deletion	Chr4	30464001	30476000	11999	OsKitaake04g235100
Deletion	Chr3	31264001	31321000	56999	8
Deletion	Chr4	36463062	36463065	3
Deletion	Chr1	41789169	41789180	11

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	26782867	26782871	3
Insertion	Chr3	9443505	9443508	2
Insertion	Chr3	13125806	13125809	2
Insertion	Chr4	8112613	8112616	2
Insertion	Chr6	1177960	1177963	2
Insertion	Chr6	6847667	6847670	2
Insertion	Chr10	21019892	21019895	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2997876	Chr1	40756401
Translocation	Chr3	4351841	Chr1	40757304	OsKitaake03g062800
Translocation	Chr7	10842388	Chr1	19342541

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Gene Affected

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