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Mutant Information

Mutant Name	FN3019-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3019-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33905 A-G Hetero INTRON
SBS Chr1 11586174 T-A Hetero SYNONYMOUS_CODING
SBS Chr1 17401349 C-T Hetero INTERGENIC
SBS Chr1 21493358 T-A Hetero INTERGENIC
SBS Chr1 31821073 T-G Hetero INTERGENIC
SBS Chr2 1766716 G-A Homo INTRON
SBS Chr2 1766717 G-A Homo INTRON
SBS Chr2 14869927 C-A Hetero INTERGENIC
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr2 28253104 G-T Hetero INTERGENIC
SBS Chr3 9677892 T-C Homo INTERGENIC
SBS Chr3 13116187 G-T Homo INTRON
SBS Chr3 24556755 G-A Hetero INTERGENIC
SBS Chr4 4616765 A-C Homo INTERGENIC
SBS Chr4 6532944 A-T Homo INTERGENIC
SBS Chr4 6771423 T-C Homo INTERGENIC
SBS Chr4 27817436 T-A Hetero INTERGENIC
SBS Chr5 15277963 G-A Homo INTERGENIC
SBS Chr5 25894726 T-A Hetero INTERGENIC
SBS Chr5 28206997 A-C Hetero INTERGENIC
SBS Chr6 8593051 G-A Homo INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr6 24465586 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g216200
SBS Chr6 27701277 C-T Hetero INTERGENIC
SBS Chr7 23429207 G-A Homo INTERGENIC
SBS Chr7 24126193 C-A Hetero INTERGENIC
SBS Chr7 28515738 G-C Homo INTERGENIC
SBS Chr8 949443 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g012400
SBS Chr8 18714060 C-A Homo INTRON
SBS Chr9 4663538 A-C Hetero INTERGENIC
SBS Chr9 4785895 C-T Hetero INTERGENIC
SBS Chr9 4785896 C-T Hetero INTERGENIC
SBS Chr9 16453614 G-C Hetero INTERGENIC
SBS Chr9 17402023 G-A Hetero INTRON
SBS Chr9 18309141 G-A Hetero INTERGENIC
SBS Chr10 12947975 C-T Hetero INTERGENIC
SBS Chr10 21703972 T-A Hetero INTERGENIC
SBS Chr11 10819225 G-A Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr12 3527242 G-T Hetero INTRON
SBS Chr12 17981754 C-T Hetero INTERGENIC
SBS Chr12 23650583 G-A Hetero INTERGENIC
SBS Chr12 26189266 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 512126 512129 3
Deletion Chr8 745207 745210 3
Deletion Chr4 947568 947573 5
Deletion Chr3 1803001 2028000 224999 36
Deletion Chr5 2173338 2173344 6
Deletion Chr4 3269306 3269334 28
Deletion Chr10 7508001 7550000 41999 OsKitaake10g048800
Deletion Chr10 7580001 7723000 142999 3
Deletion Chr4 8183199 8183205 6
Deletion Chr12 15512227 15512234 7
Deletion Chr5 16889497 16889500 3
Deletion Chr1 18319526 18319528 2
Deletion Chr8 20808001 20831000 22999 5
Deletion Chr3 25195483 25195489 6
Deletion Chr4 30831923 30831932 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6074877 6074879 1
Insertion Chr2 12160477 12160480 2
Insertion Chr4 22992221 22992224 2
Insertion Chr12 25899502 25899505 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1253035 Chr5 6813468
Translocation Chr10 1253040 Chr5 6813054
Translocation Chr5 5973371 Chr1 13222984

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33905	A-G	Hetero	INTRON
SBS	Chr1	11586174	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	17401349	C-T	Hetero	INTERGENIC
SBS	Chr1	21493358	T-A	Hetero	INTERGENIC
SBS	Chr1	31821073	T-G	Hetero	INTERGENIC
SBS	Chr2	1766716	G-A	Homo	INTRON
SBS	Chr2	1766717	G-A	Homo	INTRON
SBS	Chr2	14869927	C-A	Hetero	INTERGENIC
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr2	28253104	G-T	Hetero	INTERGENIC
SBS	Chr3	9677892	T-C	Homo	INTERGENIC
SBS	Chr3	13116187	G-T	Homo	INTRON
SBS	Chr3	24556755	G-A	Hetero	INTERGENIC
SBS	Chr4	4616765	A-C	Homo	INTERGENIC
SBS	Chr4	6532944	A-T	Homo	INTERGENIC
SBS	Chr4	6771423	T-C	Homo	INTERGENIC
SBS	Chr4	27817436	T-A	Hetero	INTERGENIC
SBS	Chr5	15277963	G-A	Homo	INTERGENIC
SBS	Chr5	25894726	T-A	Hetero	INTERGENIC
SBS	Chr5	28206997	A-C	Hetero	INTERGENIC
SBS	Chr6	8593051	G-A	Homo	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr6	24465586	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g216200
SBS	Chr6	27701277	C-T	Hetero	INTERGENIC
SBS	Chr7	23429207	G-A	Homo	INTERGENIC
SBS	Chr7	24126193	C-A	Hetero	INTERGENIC
SBS	Chr7	28515738	G-C	Homo	INTERGENIC
SBS	Chr8	949443	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g012400
SBS	Chr8	18714060	C-A	Homo	INTRON
SBS	Chr9	4663538	A-C	Hetero	INTERGENIC
SBS	Chr9	4785895	C-T	Hetero	INTERGENIC
SBS	Chr9	4785896	C-T	Hetero	INTERGENIC
SBS	Chr9	16453614	G-C	Hetero	INTERGENIC
SBS	Chr9	17402023	G-A	Hetero	INTRON
SBS	Chr9	18309141	G-A	Hetero	INTERGENIC
SBS	Chr10	12947975	C-T	Hetero	INTERGENIC
SBS	Chr10	21703972	T-A	Hetero	INTERGENIC
SBS	Chr11	10819225	G-A	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr12	3527242	G-T	Hetero	INTRON
SBS	Chr12	17981754	C-T	Hetero	INTERGENIC
SBS	Chr12	23650583	G-A	Hetero	INTERGENIC
SBS	Chr12	26189266	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	512126	512129	3
Deletion	Chr8	745207	745210	3
Deletion	Chr4	947568	947573	5
Deletion	Chr3	1803001	2028000	224999	36
Deletion	Chr5	2173338	2173344	6
Deletion	Chr4	3269306	3269334	28
Deletion	Chr10	7508001	7550000	41999	OsKitaake10g048800
Deletion	Chr10	7580001	7723000	142999	3
Deletion	Chr4	8183199	8183205	6
Deletion	Chr12	15512227	15512234	7
Deletion	Chr5	16889497	16889500	3
Deletion	Chr1	18319526	18319528	2
Deletion	Chr8	20808001	20831000	22999	5
Deletion	Chr3	25195483	25195489	6
Deletion	Chr4	30831923	30831932	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1253035	Chr5	6813468
Translocation	Chr10	1253040	Chr5	6813054
Translocation	Chr5	5973371	Chr1	13222984

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes