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Mutant Information

Mutant Name	FN302-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN302-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12457014 A-G Hetero INTERGENIC
SBS Chr2 10098403 A-T Hetero INTERGENIC
SBS Chr2 17495685 T-C Hetero INTERGENIC
SBS Chr2 29733981 T-C Hetero INTRON
SBS Chr3 19278653 A-G Hetero INTERGENIC
SBS Chr3 20595577 T-A Hetero INTERGENIC
SBS Chr3 24806218 C-T Homo INTERGENIC
SBS Chr3 37564970 C-A Hetero INTRON
SBS Chr4 5415918 C-T Homo INTERGENIC
SBS Chr4 5415920 C-T Homo INTERGENIC
SBS Chr4 5415921 G-T Homo INTERGENIC
SBS Chr4 22505536 C-T Hetero INTERGENIC
SBS Chr4 35141421 C-T Hetero INTERGENIC
SBS Chr5 11376002 C-T Homo INTERGENIC
SBS Chr6 4248734 A-G Hetero INTRON
SBS Chr6 12117568 T-C Hetero INTERGENIC
SBS Chr6 14030239 T-C Hetero INTERGENIC
SBS Chr6 16506240 G-A Hetero INTERGENIC
SBS Chr7 17227856 T-C Hetero INTERGENIC
SBS Chr8 960530 G-T Hetero INTERGENIC
SBS Chr8 3046292 A-T Hetero INTERGENIC
SBS Chr8 5789770 A-C Hetero INTRON
SBS Chr10 11018848 G-A Hetero INTRON
SBS Chr10 13710882 T-G Homo INTERGENIC
SBS Chr11 9134678 G-A Hetero INTERGENIC
SBS Chr11 14043488 C-A Hetero INTERGENIC
SBS Chr11 28491644 G-A Hetero INTERGENIC
SBS Chr12 6031320 G-A Homo INTERGENIC
SBS Chr12 12421027 G-A Homo INTERGENIC

Deletions: 36

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 844001 863000 18999
Deletion Chr2 3875001 3903000 27999 2
Deletion Chr8 4929001 4939000 9999
Deletion Chr10 6067001 6082000 14999
Deletion Chr5 6439001 6453000 13999
Deletion Chr8 8948001 8975000 26999
Deletion Chr10 9399001 9410000 10999
Deletion Chr9 9664001 9680000 15999
Deletion Chr8 10392001 10414000 21999
Deletion Chr5 10923001 10944000 20999
Deletion Chr11 10979001 10993000 13999
Deletion Chr8 11529001 11547000 17999
Deletion Chr4 11784001 11796000 11999
Deletion Chr7 12027001 12035000 7999
Deletion Chr8 14231001 14251000 19999
Deletion Chr5 14836165 14836166 1
Deletion Chr5 14850665 14850677 12 OsKitaake05g113200
Deletion Chr10 14883001 14894000 10999
Deletion Chr8 15668001 15677000 8999
Deletion Chr9 16749001 16761000 11999
Deletion Chr6 16858001 16867000 8999
Deletion Chr10 17111358 17111362 4
Deletion Chr7 17212049 17212055 6
Deletion Chr6 18367818 18367822 4
Deletion Chr7 22506001 22519000 12999 5
Deletion Chr11 22603001 22625000 21999
Deletion Chr11 24437857 24437858 1
Deletion Chr6 25655001 25670000 14999
Deletion Chr11 26830001 26857000 26999 OsKitaake11g218400
Deletion Chr6 29039001 29062000 22999
Deletion Chr7 29426001 29436000 9999
Deletion Chr2 29631001 29648000 16999 OsKitaake02g299501
Deletion Chr6 29970915 29970919 4
Deletion Chr4 33505001 33517000 11999
Deletion Chr1 36212001 36236000 23999
Deletion Chr3 37534367 37534369 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22492942 22492944 1
Insertion Chr5 13240544 13240547 2
Insertion Chr11 6980489 6980491 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12457014	A-G	Hetero	INTERGENIC
SBS	Chr2	10098403	A-T	Hetero	INTERGENIC
SBS	Chr2	17495685	T-C	Hetero	INTERGENIC
SBS	Chr2	29733981	T-C	Hetero	INTRON
SBS	Chr3	19278653	A-G	Hetero	INTERGENIC
SBS	Chr3	20595577	T-A	Hetero	INTERGENIC
SBS	Chr3	24806218	C-T	Homo	INTERGENIC
SBS	Chr3	37564970	C-A	Hetero	INTRON
SBS	Chr4	5415918	C-T	Homo	INTERGENIC
SBS	Chr4	5415920	C-T	Homo	INTERGENIC
SBS	Chr4	5415921	G-T	Homo	INTERGENIC
SBS	Chr4	22505536	C-T	Hetero	INTERGENIC
SBS	Chr4	35141421	C-T	Hetero	INTERGENIC
SBS	Chr5	11376002	C-T	Homo	INTERGENIC
SBS	Chr6	4248734	A-G	Hetero	INTRON
SBS	Chr6	12117568	T-C	Hetero	INTERGENIC
SBS	Chr6	14030239	T-C	Hetero	INTERGENIC
SBS	Chr6	16506240	G-A	Hetero	INTERGENIC
SBS	Chr7	17227856	T-C	Hetero	INTERGENIC
SBS	Chr8	960530	G-T	Hetero	INTERGENIC
SBS	Chr8	3046292	A-T	Hetero	INTERGENIC
SBS	Chr8	5789770	A-C	Hetero	INTRON
SBS	Chr10	11018848	G-A	Hetero	INTRON
SBS	Chr10	13710882	T-G	Homo	INTERGENIC
SBS	Chr11	9134678	G-A	Hetero	INTERGENIC
SBS	Chr11	14043488	C-A	Hetero	INTERGENIC
SBS	Chr11	28491644	G-A	Hetero	INTERGENIC
SBS	Chr12	6031320	G-A	Homo	INTERGENIC
SBS	Chr12	12421027	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	844001	863000	18999
Deletion	Chr2	3875001	3903000	27999	2
Deletion	Chr8	4929001	4939000	9999
Deletion	Chr10	6067001	6082000	14999
Deletion	Chr5	6439001	6453000	13999
Deletion	Chr8	8948001	8975000	26999
Deletion	Chr10	9399001	9410000	10999
Deletion	Chr9	9664001	9680000	15999
Deletion	Chr8	10392001	10414000	21999
Deletion	Chr5	10923001	10944000	20999
Deletion	Chr11	10979001	10993000	13999
Deletion	Chr8	11529001	11547000	17999
Deletion	Chr4	11784001	11796000	11999
Deletion	Chr7	12027001	12035000	7999
Deletion	Chr8	14231001	14251000	19999
Deletion	Chr5	14836165	14836166	1
Deletion	Chr5	14850665	14850677	12	OsKitaake05g113200
Deletion	Chr10	14883001	14894000	10999
Deletion	Chr8	15668001	15677000	8999
Deletion	Chr9	16749001	16761000	11999
Deletion	Chr6	16858001	16867000	8999
Deletion	Chr10	17111358	17111362	4
Deletion	Chr7	17212049	17212055	6
Deletion	Chr6	18367818	18367822	4
Deletion	Chr7	22506001	22519000	12999	5
Deletion	Chr11	22603001	22625000	21999
Deletion	Chr11	24437857	24437858	1
Deletion	Chr6	25655001	25670000	14999
Deletion	Chr11	26830001	26857000	26999	OsKitaake11g218400
Deletion	Chr6	29039001	29062000	22999
Deletion	Chr7	29426001	29436000	9999
Deletion	Chr2	29631001	29648000	16999	OsKitaake02g299501
Deletion	Chr6	29970915	29970919	4
Deletion	Chr4	33505001	33517000	11999
Deletion	Chr1	36212001	36236000	23999
Deletion	Chr3	37534367	37534369	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes