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Mutant Information

Mutant Name	FN3028-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3028-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8309427 T-C Homo INTERGENIC
SBS Chr1 24849199 G-A Hetero INTERGENIC
SBS Chr1 36322219 G-A Hetero INTERGENIC
SBS Chr1 39711316 C-T Homo INTERGENIC
SBS Chr2 33426849 G-A Homo INTERGENIC
SBS Chr2 33776487 A-T Homo INTERGENIC
SBS Chr3 2780022 C-T Hetero INTERGENIC
SBS Chr3 17542705 A-T Hetero INTERGENIC
SBS Chr3 19223374 A-G Homo INTERGENIC
SBS Chr3 21521095 T-C Hetero INTERGENIC
SBS Chr4 14247141 C-T Hetero INTERGENIC
SBS Chr4 22315115 G-A Hetero INTERGENIC
SBS Chr4 25393856 T-A Hetero INTERGENIC
SBS Chr4 27202422 G-A Hetero INTERGENIC
SBS Chr4 28343822 C-A Hetero INTERGENIC
SBS Chr7 6246602 T-A Homo INTERGENIC
SBS Chr7 12735865 A-G Hetero INTERGENIC
SBS Chr7 16946141 G-A Homo INTRON
SBS Chr8 9945597 G-A Homo INTERGENIC
SBS Chr8 12006646 C-T Hetero INTERGENIC
SBS Chr9 1414880 A-C Hetero INTRON
SBS Chr9 5673440 G-T Hetero INTERGENIC
SBS Chr10 16223341 C-T Homo INTERGENIC
SBS Chr11 5055104 C-A Hetero INTERGENIC

Deletions: 1069

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 344001 372000 27999 OsKitaake09g002550
Deletion Chr1 360001 381000 20999 OsKitaake01g005200
Deletion Chr10 521001 559000 37999 4
Deletion Chr8 562001 585000 22999 4
Deletion Chr10 590001 647000 56999 3
Deletion Chr6 628001 666000 37999 5
Deletion Chr6 683001 693000 9999 2
Deletion Chr9 715001 736000 20999
Deletion Chr12 798001 820000 21999 2
Deletion Chr4 805001 819000 13999 2
Deletion Chr9 839001 863000 23999 OsKitaake09g005400
Deletion Chr7 841001 869000 27999 3
Deletion Chr9 882001 911000 28999 4
Deletion Chr8 911001 943000 31999 2
Deletion Chr11 950001 986000 35999 6
Deletion Chr10 968001 1000000 31999 OsKitaake10g007100
Deletion Chr7 995001 1019000 23999 6
Deletion Chr10 1020001 1048000 27999 2
Deletion Chr9 1027001 1064000 36999 OsKitaake09g006400
Deletion Chr9 1147001 1170000 22999 OsKitaake09g006900
Deletion Chr5 1186001 1236000 49999 5
Deletion Chr8 1303001 1327000 23999 2
Deletion Chr4 1339001 1355000 15999
Deletion Chr2 1370001 1401000 30999 5
Deletion Chr1 1411001 1433000 21999 7
Deletion Chr8 1442001 1493000 50999 5
Deletion Chr11 1443001 1472000 28999 6
Deletion Chr4 1484001 1506000 21999
Deletion Chr12 1485001 1518000 32999 5
Deletion Chr1 1548001 1601000 52999 9
Deletion Chr12 1588001 1605000 16999 2
Deletion Chr9 1601001 1675000 73999 OsKitaake09g009200
Deletion Chr11 1605001 1627000 21999 4
Deletion Chr4 1630001 1645000 14999
Deletion Chr7 1638001 1665000 26999 8
Deletion Chr8 1648001 1764000 115999 15
Deletion Chr2 1652001 1678000 25999 6
Deletion Chr4 1661001 1678000 16999
Deletion Chr9 1724001 1755000 30999 2
Deletion Chr4 1739001 1810000 70999 6
Deletion Chr8 1839001 1859000 19999 OsKitaake08g228700
Deletion Chr1 1874001 1887000 12999
Deletion Chr3 1956001 1984000 27999 8
Deletion Chr9 1960001 1980000 19999 OsKitaake09g010600
Deletion Chr9 2038001 2052000 13999 OsKitaake09g010900
Deletion Chr4 2040001 2103000 62999 4
Deletion Chr8 2043001 2058000 14999 3
Deletion Chr3 2060001 2089000 28999 3
Deletion Chr9 2068001 2114000 45999 3
Deletion Chr9 2189001 2199000 9999 OsKitaake09g011400
Deletion Chr8 2244001 2263000 18999 OsKitaake08g026800
Deletion Chr5 2286001 2306000 19999 3
Deletion Chr10 2295001 2383000 87999 12
Deletion Chr4 2378001 2431000 52999 2
Deletion Chr2 2480001 2527000 46999 4
Deletion Chr10 2633001 2665000 31999 6
Deletion Chr9 2652001 2673000 20999 2
Deletion Chr11 2666001 2690000 23999 2
Deletion Chr12 2783001 2794000 10999 3
Deletion Chr10 2790001 2825000 34999 4
Deletion Chr9 2806001 2827000 20999 2
Deletion Chr12 2834001 2852000 17999 2
Deletion Chr8 2848001 2886000 37999 3
Deletion Chr12 2881001 2899000 17999
Deletion Chr11 2921001 2951000 29999 11
Deletion Chr2 2956001 2975000 18999 2
Deletion Chr3 2983001 3009000 25999 4
Deletion Chr10 2989001 3050000 60999 3
Deletion Chr1 3025001 3046000 20999 OsKitaake01g038200
Deletion Chr11 3031001 3055000 23999 2
Deletion Chr5 3047001 3065000 17999 3
Deletion Chr8 3054001 3090000 35999 8
Deletion Chr5 3111001 3126000 14999 2
Deletion Chr9 3120001 3147000 26999
Deletion Chr10 3128001 3170000 41999 3
Deletion Chr2 3139001 3208000 68999 13
Deletion Chr3 3173001 3184000 10999 3
Deletion Chr7 3211001 3233000 21999 5
Deletion Chr12 3222001 3243000 20999 2
Deletion Chr11 3244001 3260000 15999 2
Deletion Chr6 3271001 3310000 38999 5
Deletion Chr1 3289001 3307000 17999 3
Deletion Chr7 3335001 3401000 65999 7
Deletion Chr2 3382001 3407000 24999 4
Deletion Chr4 3479001 3550000 70999 2
Deletion Chr10 3498001 3519000 20999 OsKitaake10g026400
Deletion Chr9 3499001 3512000 12999 OsKitaake09g018000
Deletion Chr5 3523001 3546000 22999 3
Deletion Chr11 3532001 3564000 31999 3
Deletion Chr9 3544001 3563000 18999
Deletion Chr12 3551001 3569000 17999 OsKitaake12g049700
Deletion Chr7 3603001 3624000 20999 2
Deletion Chr11 3610001 3661000 50999 14
Deletion Chr9 3611001 3624000 12999
Deletion Chr6 3744001 3820000 75999 8
Deletion Chr10 3779001 3799000 19999 OsKitaake10g028900
Deletion Chr10 3817001 3855000 37999 OsKitaake10g029100
Deletion Chr1 3838001 3865000 26999
Deletion Chr4 3889001 3913000 23999
Deletion Chr8 3903001 3924000 20999
Deletion Chr11 3905001 3943000 37999 5
Deletion Chr9 3909001 3942000 32999 OsKitaake09g020900
Deletion Chr12 3925001 3943000 17999 2
Deletion Chr4 3927001 3953000 25999
Deletion Chr2 3966001 3989000 22999 OsKitaake02g056720
Deletion Chr9 3982001 4023000 40999 3
Deletion Chr3 3990001 4023000 32999 5
Deletion Chr4 3992001 4034000 41999 6
Deletion Chr11 4018001 4032000 13999 OsKitaake11g055000
Deletion Chr10 4041001 4067000 25999 2
Deletion Chr4 4080001 4136000 55999 OsKitaake04g020000
Deletion Chr6 4121001 4138000 16999 OsKitaake06g057700
Deletion Chr10 4151001 4216000 64999 4
Deletion Chr8 4163001 4190000 26999 3
Deletion Chr6 4182785 4182786 1
Deletion Chr4 4199001 4211000 11999 OsKitaake04g020600
Deletion Chr9 4224001 4265000 40999 OsKitaake09g023100
Deletion Chr4 4265001 4302000 36999 2
Deletion Chr7 4278001 4320000 41999 5
Deletion Chr3 4299001 4323000 23999 5
Deletion Chr10 4301001 4395000 93999 4
Deletion Chr12 4323001 4343000 19999 OsKitaake12g059600
Deletion Chr9 4328001 4346000 17999 2
Deletion Chr12 4385001 4424000 38999 2
Deletion Chr11 4392001 4465000 72999 10
Deletion Chr6 4395001 4430000 34999 4
Deletion Chr10 4447001 4478000 30999 2
Deletion Chr2 4458001 4480000 21999 2
Deletion Chr6 4503001 4562000 58999 8
Deletion Chr11 4514001 4562000 47999 3
Deletion Chr2 4542001 4574000 31999 3
Deletion Chr8 4570001 4585000 14999 4
Deletion Chr6 4588001 4618000 29999 4
Deletion Chr12 4639001 4671000 31999 3
Deletion Chr6 4685001 4705000 19999 2
Deletion Chr2 4699001 4716000 16999 9
Deletion Chr10 4712001 4734000 21999 OsKitaake10g034500
Deletion Chr12 4784001 4877000 92999 8
Deletion Chr9 4790001 4810000 19999
Deletion Chr7 4793001 4823000 29999 5
Deletion Chr10 4823001 4851000 27999 3
Deletion Chr4 4861001 4949000 87999 3
Deletion Chr11 4884001 4913000 28999 3
Deletion Chr2 4898001 4941000 42999 10
Deletion Chr6 4932001 4946000 13999 4
Deletion Chr7 4952001 5007000 54999 4
Deletion Chr3 5064001 5089000 24999 5
Deletion Chr11 5108001 5161000 52999 8
Deletion Chr9 5118001 5191000 72999 OsKitaake09g030000
Deletion Chr7 5129001 5151000 21999 4
Deletion Chr8 5136001 5164000 27999 OsKitaake08g056000
Deletion Chr12 5187001 5200000 12999
Deletion Chr2 5214001 5239000 24999 OsKitaake02g072000
Deletion Chr12 5229001 5247000 17999 4
Deletion Chr10 5239001 5264000 24999 2
Deletion Chr9 5255001 5291000 35999
Deletion Chr11 5280001 5301000 20999 3
Deletion Chr8 5320001 5378000 57999 5
Deletion Chr5 5358001 5379000 20999
Deletion Chr9 5388001 5437000 48999 OsKitaake09g030900
Deletion Chr7 5448001 5479000 30999 4
Deletion Chr4 5525001 5597000 71999 5
Deletion Chr10 5539001 5553000 13999
Deletion Chr7 5611001 5629000 17999 3
Deletion Chr4 5647001 5762000 114999 3
Deletion Chr10 5659001 5694000 34999 6
Deletion Chr8 5671001 5720000 48999 9
Deletion Chr6 5698001 5750000 51999 8
Deletion Chr7 5702001 5742000 39999 7
Deletion Chr5 5754001 5767000 12999 2
Deletion Chr10 5768001 5797000 28999 3
Deletion Chr11 5771001 5798000 26999 4
Deletion Chr1 5817001 5880000 62999 13
Deletion Chr10 5836001 5870000 33999 OsKitaake10g040300
Deletion Chr8 5865001 5904000 38999 2
Deletion Chr4 5874001 5896000 21999 3
Deletion Chr11 5890001 5929000 38999 5
Deletion Chr8 5958001 5974000 15999 OsKitaake08g064600
Deletion Chr11 5985001 6011000 25999 4
Deletion Chr5 5991001 6017000 25999 OsKitaake05g180600
Deletion Chr6 6021001 6100000 78999 14
Deletion Chr10 6037001 6067000 29999 5
Deletion Chr2 6052001 6102000 49999 3
Deletion Chr3 6083001 6152000 68999 11
Deletion Chr4 6085001 6142000 56999 6
Deletion Chr5 6156001 6172000 15999
Deletion Chr6 6186001 6208000 21999 3
Deletion Chr4 6208001 6220000 11999
Deletion Chr9 6224001 6239000 14999
Deletion Chr12 6236001 6253000 16999 OsKitaake12g072500
Deletion Chr2 6254001 6286000 31999 4
Deletion Chr5 6266001 6290000 23999 2
Deletion Chr11 6295001 6333000 37999 OsKitaake11g075400
Deletion Chr2 6302001 6317000 14999 4
Deletion Chr2 6336001 6359000 22999 5
Deletion Chr7 6339001 6410000 70999 2
Deletion Chr3 6354001 6386000 31999 2
Deletion Chr2 6379001 6416000 36999 3
Deletion Chr12 6388001 6413000 24999 OsKitaake12g073900
Deletion Chr1 6424001 6445000 20999 3
Deletion Chr3 6446001 6467000 20999 6
Deletion Chr12 6469001 6493000 23999 2
Deletion Chr10 6470001 6486000 15999 4
Deletion Chr4 6508001 6557000 48999 5
Deletion Chr5 6519001 6541000 21999 2
Deletion Chr7 6648001 6699000 50999 5
Deletion Chr2 6650001 6665000 14999 4
Deletion Chr12 6660001 6685000 24999
Deletion Chr9 6672001 6747000 74999 OsKitaake09g038500
Deletion Chr12 6716001 6749000 32999
Deletion Chr10 6717001 6752000 34999 3
Deletion Chr1 6759001 6771000 11999 4
Deletion Chr11 6803001 6819000 15999 OsKitaake11g079855
Deletion Chr7 6870001 6883000 12999
Deletion Chr12 6872001 6901000 28999 OsKitaake12g078200
Deletion Chr5 6877001 6904000 26999 3
Deletion Chr1 6894001 6918000 23999 7
Deletion Chr9 6962001 6993000 30999 4
Deletion Chr4 6976001 6988000 11999
Deletion Chr7 6977001 6990000 12999 6
Deletion Chr11 6982001 7012000 29999 3
Deletion Chr5 6998001 7028000 29999 3
Deletion Chr10 7050001 7071000 20999 3
Deletion Chr11 7057001 7070000 12999
Deletion Chr7 7159001 7184000 24999 2
Deletion Chr10 7214001 7248000 33999 3
Deletion Chr11 7215001 7239000 23999 2
Deletion Chr1 7244001 7271000 26999 3
Deletion Chr2 7256001 7276000 19999 5
Deletion Chr9 7284001 7305000 20999 OsKitaake09g041900
Deletion Chr8 7285001 7304000 18999
Deletion Chr12 7315001 7343000 27999 2
Deletion Chr7 7319001 7339000 19999
Deletion Chr11 7348001 7382000 33999 OsKitaake11g083701
Deletion Chr4 7363001 7380000 16999 OsKitaake04g037500
Deletion Chr3 7369001 7401000 31999 5
Deletion Chr7 7375001 7427000 51999 4
Deletion Chr9 7417001 7491000 73999 3
Deletion Chr10 7431001 7503000 71999 3
Deletion Chr8 7432001 7450000 17999
Deletion Chr7 7488001 7546000 57999 7
Deletion Chr8 7526001 7546000 19999 OsKitaake08g070432
Deletion Chr9 7566001 7608000 41999 OsKitaake09g043000
Deletion Chr9 7620001 7704000 83999 4
Deletion Chr3 7666001 7696000 29999 4
Deletion Chr7 7696001 7733000 36999 4
Deletion Chr5 7697001 7742000 44999 3
Deletion Chr10 7722001 7831000 108999 4
Deletion Chr4 7736001 7758000 21999 4
Deletion Chr7 7757001 7843000 85999 6
Deletion Chr11 7758001 7795000 36999 OsKitaake11g086500
Deletion Chr9 7791001 7820000 28999 OsKitaake09g043900
Deletion Chr6 7854001 7908000 53999 9
Deletion Chr12 7895001 7920000 24999
Deletion Chr10 7921001 8051000 129999 11
Deletion Chr2 7961001 7999000 37999
Deletion Chr11 7993001 8012000 18999
Deletion Chr3 8014001 8044000 29999 3
Deletion Chr12 8018001 8050000 31999 2
Deletion Chr8 8025001 8046000 20999
Deletion Chr1 8051001 8092000 40999 5
Deletion Chr7 8086001 8101000 14999 2
Deletion Chr6 8165001 8193000 27999 3
Deletion Chr9 8247001 8350000 102999 4
Deletion Chr6 8248001 8286000 37999 5
Deletion Chr8 8273001 8303000 29999 OsKitaake08g076000
Deletion Chr7 8299001 8315000 15999
Deletion Chr4 8333001 8359000 25999
Deletion Chr3 8343001 8365000 21999 3
Deletion Chr1 8404001 8421000 16999 3
Deletion Chr3 8453001 8472000 18999 OsKitaake03g116100
Deletion Chr12 8460001 8472000 11999
Deletion Chr2 8492001 8515000 22999 5
Deletion Chr11 8497001 8546000 48999 2
Deletion Chr7 8511001 8534000 22999 2
Deletion Chr1 8566001 8610000 43999 8
Deletion Chr7 8589001 8611000 21999 3
Deletion Chr5 8595001 8616000 20999
Deletion Chr9 8607001 8626000 18999
Deletion Chr2 8629001 8648000 18999 2
Deletion Chr9 8660001 8683000 22999
Deletion Chr10 8678999 8679164 165
Deletion Chr12 8684001 8695000 10999
Deletion Chr4 8694001 8727000 32999 4
Deletion Chr7 8705001 8724000 18999 OsKitaake07g092700
Deletion Chr11 8710001 8786000 75999 7
Deletion Chr9 8725001 8752000 26999 OsKitaake09g051250
Deletion Chr5 8740001 8795000 54999 5
Deletion Chr12 8745001 8776000 30999 OsKitaake12g088200
Deletion Chr6 8754001 8771000 16999
Deletion Chr9 8785001 8807000 21999
Deletion Chr12 8791001 8812000 20999 3
Deletion Chr11 8851001 8887000 35999 3
Deletion Chr4 8863001 8883000 19999 OsKitaake04g045800
Deletion Chr3 8884001 8914000 29999 4
Deletion Chr5 8886001 8905000 18999 OsKitaake05g084000
Deletion Chr4 8963001 8983000 19999 2
Deletion Chr10 8980001 9002000 21999 OsKitaake10g053500
Deletion Chr4 9005001 9022000 16999 OsKitaake04g046500
Deletion Chr11 9019001 9110000 90999 4
Deletion Chr4 9039001 9100000 60999 OsKitaake04g046700
Deletion Chr2 9095001 9115000 19999 OsKitaake02g113800
Deletion Chr9 9139001 9154000 14999 3
Deletion Chr8 9151001 9179000 27999 3
Deletion Chr11 9160001 9203000 42999 2
Deletion Chr1 9211001 9228000 16999 3
Deletion Chr7 9217001 9234000 16999 OsKitaake07g095400
Deletion Chr11 9223001 9246000 22999 2
Deletion Chr10 9265001 9285000 19999
Deletion Chr7 9287001 9312000 24999
Deletion Chr4 9339001 9359000 19999 2
Deletion Chr11 9356001 9370000 13999 OsKitaake11g097900
Deletion Chr1 9367001 9388000 20999 OsKitaake01g120200
Deletion Chr5 9381001 9405000 23999
Deletion Chr12 9469001 9500000 30999 3
Deletion Chr8 9493001 9515000 21999
Deletion Chr6 9495001 9515000 19999 5
Deletion Chr3 9505001 9537000 31999 4
Deletion Chr4 9527001 9567000 39999 OsKitaake04g049400
Deletion Chr8 9549001 9566000 16999
Deletion Chr10 9550001 9619000 68999 4
Deletion Chr11 9557001 9635000 77999 3
Deletion Chr5 9571001 9621000 49999 3
Deletion Chr7 9583001 9617000 33999
Deletion Chr8 9648001 9669000 20999 OsKitaake08g090800
Deletion Chr7 9669001 9698000 28999 OsKitaake07g096900
Deletion Chr3 9674001 9691000 16999 4
Deletion Chr8 9721001 9748000 26999 OsKitaake08g091400
Deletion Chr4 9753001 9800000 46999 OsKitaake04g051600
Deletion Chr8 9764001 9806000 41999
Deletion Chr9 9814001 9852000 37999 3
Deletion Chr11 9823001 9867000 43999 OsKitaake11g101000
Deletion Chr10 9836001 9911000 74999 5
Deletion Chr2 9842632 9842636 4
Deletion Chr2 9871001 9884000 12999
Deletion Chr12 9939001 9956000 16999
Deletion Chr12 9976001 9991000 14999
Deletion Chr11 9977001 9988000 10999 OsKitaake11g101701
Deletion Chr10 9981001 10000000 18999
Deletion Chr12 10003001 10078000 74999 5
Deletion Chr8 10029001 10051000 21999
Deletion Chr6 10051001 10083000 31999 3
Deletion Chr8 10069001 10094000 24999
Deletion Chr9 10109001 10131000 21999
Deletion Chr7 10121001 10181000 59999 6
Deletion Chr8 10128001 10144000 15999
Deletion Chr5 10192001 10209000 16999
Deletion Chr4 10198001 10216000 17999
Deletion Chr9 10202001 10236000 33999 4
Deletion Chr1 10210001 10237000 26999 2
Deletion Chr2 10235001 10266000 30999 3
Deletion Chr7 10256001 10287000 30999 OsKitaake07g100700
Deletion Chr4 10264001 10278000 13999 OsKitaake04g054800
Deletion Chr11 10303001 10328000 24999
Deletion Chr11 10351001 10374000 22999
Deletion Chr8 10387001 10415000 27999 OsKitaake08g093500
Deletion Chr1 10399001 10426000 26999
Deletion Chr10 10513001 10543000 29999 6
Deletion Chr7 10534001 10574000 39999 OsKitaake07g101500
Deletion Chr12 10557001 10578000 20999 3
Deletion Chr11 10564001 10605000 40999 3
Deletion Chr2 10573001 10612000 38999 6
Deletion Chr7 10607001 10631000 23999 OsKitaake07g101700
Deletion Chr4 10619001 10671000 51999 OsKitaake04g055900
Deletion Chr11 10620001 10688000 67999 6
Deletion Chr1 10645001 10679000 33999 4
Deletion Chr8 10701001 10765000 63999 5
Deletion Chr11 10717001 10804000 86999 3
Deletion Chr8 10788001 10807000 18999 2
Deletion Chr5 10793001 10862000 68999 6
Deletion Chr7 10796001 10823000 26999
Deletion Chr12 10801001 10822000 20999 OsKitaake12g100300
Deletion Chr9 10846001 10880000 33999 2
Deletion Chr12 10848001 10872000 23999 5
Deletion Chr4 10851001 10909000 57999
Deletion Chr11 10853001 10929000 75999 3
Deletion Chr7 10866001 10994000 127999 9
Deletion Chr6 10867001 10883000 15999 OsKitaake06g121250
Deletion Chr3 10991001 11026000 34999 3
Deletion Chr5 10993001 11011000 17999
Deletion Chr4 11056001 11074000 17999
Deletion Chr9 11104001 11129000 24999
Deletion Chr4 11183001 11205000 21999
Deletion Chr3 11225001 11257000 31999 2
Deletion Chr4 11281001 11298000 16999 2
Deletion Chr5 11284001 11300000 15999
Deletion Chr1 11304001 11325000 20999 OsKitaake01g138600
Deletion Chr4 11332001 11355000 22999
Deletion Chr2 11334001 11373000 38999 OsKitaake02g131900
Deletion Chr10 11335001 11374000 38999 3
Deletion Chr3 11349001 11426000 76999 6
Deletion Chr12 11370001 11402000 31999
Deletion Chr5 11384001 11419000 34999 7
Deletion Chr4 11436001 11460000 23999
Deletion Chr3 11462001 11481000 18999 OsKitaake03g156400
Deletion Chr6 11472001 11483000 10999 OsKitaake06g126800
Deletion Chr6 11542001 11614000 71999
Deletion Chr10 11577001 11590000 12999 2
Deletion Chr9 11619001 11711000 91999 8
Deletion Chr3 11667001 11702000 34999 4
Deletion Chr1 11693001 11743000 49999 2
Deletion Chr6 11724001 11746000 21999 OsKitaake06g128000
Deletion Chr10 11733001 11753000 19999 2
Deletion Chr9 11735001 11760000 24999 OsKitaake09g074800
Deletion Chr2 11749001 11769000 19999 2
Deletion Chr9 11787001 11845000 57999 3
Deletion Chr11 11797001 11855000 57999
Deletion Chr10 11834001 11864000 29999
Deletion Chr8 11852001 11875000 22999 2
Deletion Chr2 11898001 11911000 12999 2
Deletion Chr10 11904001 11921000 16999 OsKitaake10g070900
Deletion Chr8 11908001 11924000 15999 OsKitaake08g104401
Deletion Chr11 11930001 11943000 12999
Deletion Chr2 11933001 11959000 25999 2
Deletion Chr5 11937001 12037000 99999 3
Deletion Chr10 11967001 11995000 27999 4
Deletion Chr7 12020001 12038000 17999
Deletion Chr10 12026001 12037000 10999
Deletion Chr8 12042001 12067000 24999
Deletion Chr7 12059001 12086000 26999 OsKitaake07g109500
Deletion Chr6 12094001 12120000 25999 2
Deletion Chr7 12111001 12154000 42999
Deletion Chr3 12118001 12143000 24999 4
Deletion Chr4 12126001 12155000 28999 3
Deletion Chr6 12147001 12159000 11999
Deletion Chr1 12160001 12184000 23999 OsKitaake01g148300
Deletion Chr5 12207001 12232000 24999
Deletion Chr5 12249001 12281000 31999
Deletion Chr6 12250001 12273000 22999 OsKitaake06g131500
Deletion Chr12 12268001 12283000 14999
Deletion Chr4 12280001 12358000 77999 6
Deletion Chr6 12300001 12343000 42999 7
Deletion Chr7 12307001 12324000 16999 OsKitaake07g109800
Deletion Chr5 12315001 12394000 78999 2
Deletion Chr2 12333001 12364000 30999 3
Deletion Chr8 12340001 12360000 19999 OsKitaake08g106500
Deletion Chr12 12343001 12356000 12999
Deletion Chr7 12344001 12367000 22999
Deletion Chr3 12362001 12375000 12999 OsKitaake03g166400
Deletion Chr6 12366001 12429000 62999 3
Deletion Chr7 12407449 12407450 1
Deletion Chr4 12427001 12454000 26999 OsKitaake04g060266
Deletion Chr12 12467001 12501000 33999 OsKitaake12g106600
Deletion Chr9 12489001 12528000 38999 3
Deletion Chr8 12518001 12533000 14999 3
Deletion Chr6 12534001 12566000 31999 3
Deletion Chr7 12557001 12561000 3999 OsKitaake07g112200
Deletion Chr8 12558001 12593000 34999 2
Deletion Chr4 12560001 12615000 54999 2
Deletion Chr9 12576001 12591000 14999 2
Deletion Chr2 12593001 12632000 38999 OsKitaake02g141500
Deletion Chr5 12637001 12695000 57999 OsKitaake05g098900
Deletion Chr7 12692001 12721000 28999 2
Deletion Chr10 12727001 12750000 22999 2
Deletion Chr11 12781001 12807000 25999
Deletion Chr11 12831001 12845000 13999
Deletion Chr4 12834001 12864000 29999 OsKitaake04g061200
Deletion Chr7 12845001 12878000 32999 2
Deletion Chr8 12855001 12890000 34999
Deletion Chr2 12905001 12999000 93999 11
Deletion Chr12 12964001 12983000 18999
Deletion Chr11 12990001 13032000 41999 OsKitaake11g114400
Deletion Chr9 12992001 13020000 27999 OsKitaake09g086300
Deletion Chr4 12995001 13048000 52999 OsKitaake04g061900
Deletion Chr5 13041001 13083000 41999 6
Deletion Chr9 13060001 13134000 73999 OsKitaake09g086700
Deletion Chr3 13094001 13126000 31999 2
Deletion Chr1 13106001 13121000 14999 4
Deletion Chr7 13112001 13134000 21999 2
Deletion Chr10 13134001 13152000 17999
Deletion Chr1 13195001 13211000 15999 22
Deletion Chr8 13242001 13274000 31999 OsKitaake08g110140
Deletion Chr7 13243001 13334000 90999 10
Deletion Chr12 13258001 13280000 21999 2
Deletion Chr12 13303001 13316000 12999
Deletion Chr6 13307001 13338000 30999 2
Deletion Chr10 13308001 13340000 31999 OsKitaake10g079800
Deletion Chr10 13356001 13383000 26999 2
Deletion Chr7 13357001 13380000 22999 2
Deletion Chr6 13422001 13437000 14999 4
Deletion Chr1 13427001 13441000 13999 OsKitaake01g156400
Deletion Chr5 13430001 13447000 16999 2
Deletion Chr9 13457001 13475000 17999 3
Deletion Chr5 13492001 13517000 24999
Deletion Chr2 13504001 13516000 11999
Deletion Chr4 13527001 13599000 71999 6
Deletion Chr11 13566001 13605000 38999 2
Deletion Chr6 13619001 13640000 20999 2
Deletion Chr4 13652001 13691000 38999 OsKitaake04g066200
Deletion Chr6 13673001 13743000 69999 4
Deletion Chr2 13681001 13742000 60999 3
Deletion Chr3 13711001 13726000 14999 OsKitaake03g181600
Deletion Chr5 13727001 13756000 28999 3
Deletion Chr4 13736001 13750000 13999
Deletion Chr8 13739001 13782000 42999
Deletion Chr6 13759001 13774000 14999 OsKitaake06g143800
Deletion Chr4 13771001 13800000 28999
Deletion Chr5 13784001 13803000 18999 2
Deletion Chr12 13800001 13837000 36999 4
Deletion Chr6 13811001 13841000 29999
Deletion Chr7 13816001 13832000 15999
Deletion Chr11 13817770 13817772 2
Deletion Chr10 13870001 13888000 17999 OsKitaake10g084800
Deletion Chr8 13874001 13892000 17999
Deletion Chr6 13880001 13900000 19999 3
Deletion Chr7 13930001 13948000 17999
Deletion Chr6 13945001 13973000 27999 2
Deletion Chr4 13958001 13973000 14999 4
Deletion Chr2 13973001 13997000 23999 OsKitaake02g151200
Deletion Chr11 13982001 14002000 19999
Deletion Chr1 13990001 14021000 30999 5
Deletion Chr4 14007001 14044000 36999 OsKitaake04g067250
Deletion Chr6 14010001 14024000 13999 OsKitaake06g146000
Deletion Chr5 14013001 14029000 15999 2
Deletion Chr4 14061001 14140000 78999 3
Deletion Chr12 14070001 14143000 72999 7
Deletion Chr6 14084001 14121000 36999 OsKitaake06g146500
Deletion Chr2 14101001 14119000 17999 OsKitaake02g152000
Deletion Chr6 14134001 14147000 12999 3
Deletion Chr12 14198001 14235000 36999 OsKitaake12g115500
Deletion Chr12 14309001 14336000 26999 OsKitaake12g115800
Deletion Chr10 14361001 14391000 29999
Deletion Chr5 14363001 14380000 16999
Deletion Chr6 14392001 14474000 81999 3
Deletion Chr8 14395001 14412000 16999 OsKitaake08g113000
Deletion Chr7 14449001 14474000 24999
Deletion Chr4 14453001 14523000 69999 5
Deletion Chr2 14496001 14547000 50999 OsKitaake02g156550
Deletion Chr6 14497001 14606000 108999 4
Deletion Chr11 14511001 14534000 22999 2
Deletion Chr5 14529001 14569000 39999 3
Deletion Chr2 14564001 14623000 58999
Deletion Chr1 14572001 14586000 13999 2
Deletion Chr5 14620001 14648000 27999 3
Deletion Chr10 14629001 14686000 56999 3
Deletion Chr8 14681001 14738000 56999 2
Deletion Chr2 14688001 14705000 16999
Deletion Chr6 14691001 14818000 126999 4
Deletion Chr3 14700001 14720000 19999 4
Deletion Chr10 14702001 14750000 47999 4
Deletion Chr7 14709001 14775000 65999 4
Deletion Chr10 14759001 14866000 106999 2
Deletion Chr5 14802001 14822000 19999 OsKitaake05g112900
Deletion Chr8 14809001 14838000 28999 2
Deletion Chr9 14814001 14856000 41999 5
Deletion Chr1 14820001 14861000 40999 3
Deletion Chr11 14831001 14859000 27999 OsKitaake11g122600
Deletion Chr1 14865001 14893000 27999 5
Deletion Chr4 14873001 14905000 31999 2
Deletion Chr2 14951001 14986000 34999
Deletion Chr6 14989001 14999000 9999
Deletion Chr12 15019001 15069000 49999 OsKitaake12g118500
Deletion Chr8 15020001 15040000 19999 OsKitaake08g117500
Deletion Chr6 15029001 15041000 11999
Deletion Chr8 15045001 15073000 27999
Deletion Chr2 15047001 15061000 13999
Deletion Chr6 15078001 15121000 42999 OsKitaake06g150900
Deletion Chr12 15095001 15138000 42999 2
Deletion Chr5 15105001 15125000 19999 6
Deletion Chr2 15111001 15137000 25999 2
Deletion Chr3 15112001 15133000 20999 3
Deletion Chr6 15152001 15218000 65999 5
Deletion Chr2 15165001 15194000 28999 2
Deletion Chr10 15168001 15191000 22999 2
Deletion Chr5 15184001 15245000 60999 7
Deletion Chr4 15206001 15218000 11999
Deletion Chr7 15228001 15246000 17999 2
Deletion Chr6 15264001 15334000 69999 3
Deletion Chr9 15283001 15317000 33999 7
Deletion Chr4 15329001 15354000 24999 3
Deletion Chr2 15341001 15444000 102999 4
Deletion Chr11 15393001 15414000 20999
Deletion Chr10 15422001 15442000 19999 3
Deletion Chr3 15441001 15454000 12999
Deletion Chr6 15456001 15476000 19999
Deletion Chr9 15506001 15521000 14999
Deletion Chr8 15508001 15528000 19999 OsKitaake08g120000
Deletion Chr3 15547001 15564000 16999
Deletion Chr8 15549001 15583000 33999 OsKitaake08g120200
Deletion Chr5 15558001 15586000 27999 5
Deletion Chr7 15559001 15603000 43999 5
Deletion Chr12 15622001 15646000 23999 3
Deletion Chr7 15626001 15659000 32999
Deletion Chr1 15645001 15667000 21999 OsKitaake01g170400
Deletion Chr5 15648001 15662000 13999 2
Deletion Chr2 15655001 15675000 19999 2
Deletion Chr6 15656001 15698000 41999 2
Deletion Chr11 15657001 15693000 35999 2
Deletion Chr12 15668001 15693000 24999 OsKitaake12g121300
Deletion Chr7 15695001 15716000 20999 3
Deletion Chr8 15712001 15725000 12999 OsKitaake08g121300
Deletion Chr1 15727001 15753000 25999 2
Deletion Chr5 15745001 15762000 16999 OsKitaake05g121300
Deletion Chr12 15778001 15815000 36999
Deletion Chr11 15797001 15825000 27999 3
Deletion Chr7 15799001 15841000 41999 3
Deletion Chr5 15819001 15840000 20999
Deletion Chr11 15840001 15906000 65999 4
Deletion Chr8 15844001 15870000 25999 OsKitaake08g122300
Deletion Chr7 15872001 15912000 39999 2
Deletion Chr5 15876001 15893000 16999 OsKitaake05g122000
Deletion Chr5 15931001 15950000 18999 2
Deletion Chr2 15967001 15994000 26999 5
Deletion Chr12 15999001 16053000 53999 4
Deletion Chr8 16018001 16075000 56999 4
Deletion Chr6 16042001 16077000 34999 3
Deletion Chr12 16078001 16103000 24999 2
Deletion Chr6 16096001 16124000 27999 OsKitaake06g154900
Deletion Chr12 16133001 16161000 27999
Deletion Chr7 16145001 16231000 85999 5
Deletion Chr11 16184001 16213000 28999
Deletion Chr1 16208001 16317000 108999 8
Deletion Chr9 16221001 16252000 30999 3
Deletion Chr11 16236001 16257000 20999
Deletion Chr4 16255001 16308000 52999 OsKitaake04g079833
Deletion Chr11 16283001 16312000 28999 OsKitaake11g129601
Deletion Chr3 16393001 16406000 12999 OsKitaake03g207900
Deletion Chr5 16416001 16443000 26999
Deletion Chr3 16423001 16445000 21999 3
Deletion Chr1 16434001 16472000 37999 2
Deletion Chr2 16442001 16473000 30999 3
Deletion Chr6 16445001 16466000 20999
Deletion Chr3 16482001 16500000 17999 OsKitaake03g209100
Deletion Chr5 16542001 16560000 17999 2
Deletion Chr2 16548001 16566000 17999
Deletion Chr1 16643001 16683000 39999 3
Deletion Chr5 16661001 16707000 45999 5
Deletion Chr6 16681001 16696000 14999
Deletion Chr7 16688001 16700000 11999
Deletion Chr11 16714001 16783000 68999 2
Deletion Chr3 16729001 16749000 19999
Deletion Chr5 16756001 16808000 51999 3
Deletion Chr1 16785001 16806000 20999 2
Deletion Chr8 16795001 16826000 30999 OsKitaake08g128200
Deletion Chr7 16821001 16854000 32999 OsKitaake07g138000
Deletion Chr3 16832001 16850000 17999 OsKitaake03g210800
Deletion Chr11 16835001 16881000 45999 3
Deletion Chr4 16868001 16886000 17999 OsKitaake04g082700
Deletion Chr7 16882001 16957000 74999 2
Deletion Chr8 16886001 16907000 20999 OsKitaake08g128300
Deletion Chr6 16889001 17013000 123999 4
Deletion Chr1 16895001 16998000 102999 5
Deletion Chr4 16921001 16940000 18999 OsKitaake04g083000
Deletion Chr5 16928743 16928746 3
Deletion Chr9 16966001 16979000 12999
Deletion Chr2 16983001 17021000 37999 OsKitaake02g172600
Deletion Chr11 17036001 17060000 23999 3
Deletion Chr2 17081001 17110000 28999 OsKitaake02g172800
Deletion Chr11 17084001 17098000 13999
Deletion Chr8 17102001 17117000 14999 2
Deletion Chr3 17109001 17132000 22999 3
Deletion Chr7 17134001 17162000 27999 2
Deletion Chr11 17172001 17186000 13999 OsKitaake11g134000
Deletion Chr2 17176001 17195000 18999
Deletion Chr8 17189001 17257000 67999 2
Deletion Chr10 17192001 17213000 20999
Deletion Chr7 17195001 17226000 30999
Deletion Chr3 17217001 17233000 15999
Deletion Chr6 17237001 17249000 11999 OsKitaake06g160900
Deletion Chr2 17240001 17258000 17999 OsKitaake02g173700
Deletion Chr4 17269001 17293000 23999
Deletion Chr2 17278001 17289000 10999
Deletion Chr6 17289001 17322000 32999 2
Deletion Chr3 17296001 17319000 22999
Deletion Chr10 17327001 17337000 9999
Deletion Chr2 17346001 17371000 24999 4
Deletion Chr7 17361001 17415000 53999 4
Deletion Chr6 17362001 17380000 17999 2
Deletion Chr11 17378001 17407000 28999 3
Deletion Chr4 17391001 17421000 29999 4
Deletion Chr6 17402001 17431000 28999 4
Deletion Chr8 17438001 17452000 13999
Deletion Chr1 17447001 17475000 27999 OsKitaake01g179300
Deletion Chr5 17453001 17474000 20999
Deletion Chr12 17527001 17547000 19999
Deletion Chr2 17545001 17568000 22999 4
Deletion Chr5 17582001 17606000 23999 OsKitaake05g134900
Deletion Chr5 17651001 17663000 11999 OsKitaake05g135400
Deletion Chr11 17672001 17725000 52999 4
Deletion Chr7 17696001 17722000 25999 2
Deletion Chr1 17717001 17783000 65999 4
Deletion Chr4 17719001 17738000 18999 OsKitaake04g088800
Deletion Chr4 17782001 17814000 31999 OsKitaake04g089100
Deletion Chr2 17815001 17900000 84999 4
Deletion Chr10 17864001 17899000 34999 12
Deletion Chr6 17902001 17921000 18999 2
Deletion Chr6 18046001 18123000 76999 3
Deletion Chr2 18058001 18080000 21999 OsKitaake02g179900
Deletion Chr8 18069001 18120000 50999 3
Deletion Chr4 18096001 18114000 17999 OsKitaake04g091200
Deletion Chr12 18121001 18150000 28999 2
Deletion Chr4 18156001 18209000 52999 OsKitaake04g091400
Deletion Chr10 18161001 18197000 35999 5
Deletion Chr3 18163001 18174000 10999 2
Deletion Chr8 18201001 18234000 32999 3
Deletion Chr4 18219001 18316000 96999 5
Deletion Chr3 18235001 18276000 40999 4
Deletion Chr5 18327001 18343000 15999 OsKitaake05g142600
Deletion Chr2 18344001 18356000 11999 OsKitaake02g181900
Deletion Chr10 18353001 18383000 29999 4
Deletion Chr7 18360001 18391000 30999 3
Deletion Chr8 18389001 18421000 31999 OsKitaake08g136900
Deletion Chr3 18393001 18417000 23999 OsKitaake03g223600
Deletion Chr12 18402001 18448000 45999 3
Deletion Chr1 18436001 18486000 49999 3
Deletion Chr3 18450001 18493000 42999 3
Deletion Chr7 18476001 18495000 18999 5
Deletion Chr11 18503001 18576000 72999 8
Deletion Chr10 18565001 18594000 28999
Deletion Chr1 18622001 18653000 30999 2
Deletion Chr12 18635910 18635911 1
Deletion Chr3 18682001 18718000 35999 OsKitaake03g225500
Deletion Chr8 18690001 18705000 14999 OsKitaake08g138400
Deletion Chr1 18698001 18745000 46999 8
Deletion Chr4 18720001 18741000 20999 OsKitaake04g093800
Deletion Chr11 18756001 18786000 29999 5
Deletion Chr1 18796001 18829000 32999 11
Deletion Chr4 18797001 18812000 14999 OsKitaake04g094400
Deletion Chr12 18806001 18838000 31999
Deletion Chr12 18877001 18971000 93999 7
Deletion Chr11 18899001 18924000 24999 3
Deletion Chr4 18927001 18950000 22999 4
Deletion Chr2 18935001 18962000 26999
Deletion Chr3 18977001 19009000 31999 4
Deletion Chr11 19025001 19049000 23999 OsKitaake11g148100
Deletion Chr6 19096001 19160000 63999 8
Deletion Chr12 19098001 19123000 24999 OsKitaake12g141900
Deletion Chr12 19151001 19161000 9999 3
Deletion Chr4 19241001 19350000 108999 6
Deletion Chr8 19242001 19271000 28999
Deletion Chr11 19291001 19311000 19999 OsKitaake11g149900
Deletion Chr1 19292001 19327000 34999 4
Deletion Chr10 19298001 19308000 9999 2
Deletion Chr5 19315001 19356000 40999
Deletion Chr9 19325001 19345000 19999 5
Deletion Chr12 19407001 19428000 20999 2
Deletion Chr3 19418001 19771000 352999 7
Deletion Chr8 19437001 19464000 26999 4
Deletion Chr7 19446001 19466000 19999 4
Deletion Chr1 19490001 19525000 34999 OsKitaake01g194700
Deletion Chr11 19491001 19507000 15999
Deletion Chr4 19558001 19582000 23999 5
Deletion Chr12 19587001 19622000 34999 5
Deletion Chr2 19613001 19629000 15999 3
Deletion Chr1 19628001 19687000 58999 3
Deletion Chr4 19653001 19704000 50999 5
Deletion Chr6 19655001 19670000 14999 3
Deletion Chr8 19667001 19710000 42999 3
Deletion Chr2 19686001 19706000 19999 2
Deletion Chr6 19693001 19718000 24999 2
Deletion Chr9 19696001 19712000 15999 2
Deletion Chr8 19737001 19762000 24999 4
Deletion Chr9 19786001 19808000 21999 7
Deletion Chr5 19829001 19861000 31999 5
Deletion Chr12 19846001 19867000 20999 OsKitaake12g148200
Deletion Chr9 19908001 19926000 17999 7
Deletion Chr3 19939001 20024000 84999 9
Deletion Chr6 19955001 19984000 28999 2
Deletion Chr1 20020001 20039000 18999
Deletion Chr9 20021001 20043000 21999 2
Deletion Chr6 20025001 20075000 49999 4
Deletion Chr11 20048001 20071000 22999 OsKitaake11g157328
Deletion Chr3 20063001 20083000 19999 OsKitaake03g230201
Deletion Chr1 20091001 20117000 25999
Deletion Chr3 20131001 20153000 21999
Deletion Chr8 20369001 20388000 18999 3
Deletion Chr3 20381001 20405000 23999 OsKitaake03g230800
Deletion Chr5 20436001 20469000 32999 OsKitaake05g162800
Deletion Chr1 20532001 20569000 36999 5
Deletion Chr7 20554001 20573000 18999 2
Deletion Chr8 20577001 20669000 91999 9
Deletion Chr6 20595001 20614000 18999 OsKitaake06g184500
Deletion Chr7 20675001 20685000 9999 OsKitaake07g170000
Deletion Chr9 20694001 20747000 52999 8
Deletion Chr7 20707001 20733000 25999 2
Deletion Chr2 20711001 20750000 38999 3
Deletion Chr3 20748001 20779000 30999 2
Deletion Chr11 20750001 20772000 21999 3
Deletion Chr12 20780001 20800000 19999 3
Deletion Chr2 20800001 20860000 59999 8
Deletion Chr3 20814001 20846000 31999 2
Deletion Chr1 20830001 20914000 83999 6
Deletion Chr6 20847001 20884000 36999 4
Deletion Chr3 20863001 20910000 46999 3
Deletion Chr5 20933001 20952000 18999 6
Deletion Chr4 20947001 20998000 50999 5
Deletion Chr1 20967001 20989000 21999 2
Deletion Chr7 21057001 21081000 23999 4
Deletion Chr10 21098001 21137000 38999 2
Deletion Chr4 21126001 21142000 15999 2
Deletion Chr7 21137001 21151000 13999 3
Deletion Chr1 21153001 21174000 20999 OsKitaake01g206900
Deletion Chr11 21204001 21251000 46999 5
Deletion Chr3 21205001 21247000 41999 3
Deletion Chr12 21246001 21278000 31999
Deletion Chr11 21285001 21320000 34999
Deletion Chr9 21306001 21326000 19999 2
Deletion Chr12 21308001 21350000 41999 3
Deletion Chr12 21378001 21442000 63999 4
Deletion Chr1 21397001 21418000 20999 2
Deletion Chr2 21405516 21405522 6
Deletion Chr9 21459001 21522000 62999 13
Deletion Chr7 21584001 21670000 85999 11
Deletion Chr1 21718001 21742000 23999 5
Deletion Chr7 21727001 21738000 10999 2
Deletion Chr8 21738001 21772000 33999 6
Deletion Chr11 21744001 21763000 18999
Deletion Chr3 21846001 21875000 28999 4
Deletion Chr6 21847001 21870000 22999 OsKitaake06g192500
Deletion Chr5 21928001 22010000 81999 13
Deletion Chr8 21929001 21963000 33999 3
Deletion Chr10 21939001 21959000 19999 2
Deletion Chr7 21941001 21965000 23999 2
Deletion Chr3 21943001 21962000 18999
Deletion Chr7 22006001 22028000 21999 5
Deletion Chr7 22049001 22067000 17999 3
Deletion Chr9 22065001 22088000 22999 9
Deletion Chr6 22135001 22151000 15999 OsKitaake06g194600
Deletion Chr6 22169001 22176000 6999
Deletion Chr11 22206001 22271000 64999 5
Deletion Chr4 22235001 22251000 15999 OsKitaake04g129900
Deletion Chr9 22269001 22309000 39999 6
Deletion Chr6 22367001 22398000 30999 6
Deletion Chr9 22421001 22444000 22999 4
Deletion Chr8 22483001 22504000 20999 6
Deletion Chr5 22517001 22549000 31999 6
Deletion Chr3 22530001 22550000 19999 3
Deletion Chr2 22552001 22583000 30999 5
Deletion Chr7 22592001 22678000 85999 7
Deletion Chr3 22594001 22612000 17999
Deletion Chr2 22738001 22786000 47999 8
Deletion Chr4 22794001 22811000 16999 3
Deletion Chr4 22816492 22816494 2
Deletion Chr12 22855001 22882000 26999 4
Deletion Chr6 22897001 22919000 21999 OsKitaake06g202500
Deletion Chr7 22898001 22909000 10999 OsKitaake07g197200
Deletion Chr3 23014001 23045000 30999 4
Deletion Chr11 23025001 23074000 48999 3
Deletion Chr5 23046001 23073000 26999 2
Deletion Chr1 23110001 23140000 29999 3
Deletion Chr4 23132001 23154000 21999 OsKitaake04g141000
Deletion Chr1 23249001 23274000 24999 2
Deletion Chr8 23306001 23334000 27999
Deletion Chr7 23382001 23405000 22999 4
Deletion Chr3 23393001 23425000 31999 5
Deletion Chr11 23438001 23502000 63999 9
Deletion Chr6 23443001 23467000 23999 4
Deletion Chr6 23506001 23531000 24999 3
Deletion Chr3 23537001 23560000 22999 OsKitaake03g253300
Deletion Chr6 23560001 23579000 18999 OsKitaake06g207806
Deletion Chr11 23563001 23615000 51999 3
Deletion Chr7 23605001 23637000 31999 5
Deletion Chr8 23648001 23677000 28999 6
Deletion Chr1 23663001 23688000 24999 3
Deletion Chr5 23674001 23708000 33999 3
Deletion Chr12 23675001 23690000 14999 OsKitaake12g190200
Deletion Chr8 23713001 23746000 32999 2
Deletion Chr1 23758001 23780000 21999 2
Deletion Chr7 23786001 23823000 36999 6
Deletion Chr3 23794776 23794778 2
Deletion Chr3 23806001 23841000 34999 10
Deletion Chr12 23811001 23897000 85999 9
Deletion Chr5 23822001 23841000 18999 2
Deletion Chr11 23861001 23904000 42999 6
Deletion Chr7 23941001 23963000 21999 5
Deletion Chr3 23968001 23990000 21999
Deletion Chr11 23975001 24019000 43999 12
Deletion Chr12 23976001 23997000 20999
Deletion Chr6 24011001 24032000 20999 OsKitaake06g213000
Deletion Chr1 24072001 24093000 20999 OsKitaake01g231400
Deletion Chr12 24110001 24139000 28999 3
Deletion Chr3 24173001 24189000 15999 2
Deletion Chr1 24189001 24201000 11999 4
Deletion Chr6 24235001 24266000 30999
Deletion Chr4 24249001 24268000 18999 3
Deletion Chr8 24296001 24311000 14999
Deletion Chr11 24351001 24370000 18999 2
Deletion Chr8 24391001 24406000 14999
Deletion Chr2 24401001 24431000 29999 2
Deletion Chr4 24421001 24444000 22999 4
Deletion Chr12 24476001 24493000 16999 2
Deletion Chr11 24532001 24557000 24999 3
Deletion Chr5 24619001 24643000 23999 2
Deletion Chr6 24621001 24642000 20999 2
Deletion Chr11 24637001 24664000 26999 7
Deletion Chr3 24641001 24670000 28999 OsKitaake03g263500
Deletion Chr3 24725001 24746000 20999 3
Deletion Chr3 24774001 24801000 26999
Deletion Chr1 24842001 24856000 13999
Deletion Chr8 24863001 24882000 18999
Deletion Chr8 24926001 24943000 16999 OsKitaake08g194144
Deletion Chr7 24965001 25000000 34999 8
Deletion Chr12 24973001 25002000 28999 OsKitaake12g202600
Deletion Chr6 25041001 25108000 66999 8
Deletion Chr1 25057001 25080000 22999 OsKitaake01g242700
Deletion Chr11 25065001 25158000 92999 8
Deletion Chr8 25117001 25137000 19999 4
Deletion Chr3 25179001 25204000 24999 OsKitaake03g266600
Deletion Chr11 25200001 25215000 14999
Deletion Chr8 25240001 25272000 31999 4
Deletion Chr3 25249001 25271000 21999 2
Deletion Chr2 25262001 25278000 15999 6
Deletion Chr5 25334001 25368000 33999 17
Deletion Chr11 25420001 25465000 44999 7
Deletion Chr4 25441001 25468000 26999 5
Deletion Chr2 25507001 25587000 79999 11
Deletion Chr2 25602001 25622000 19999 5
Deletion Chr11 25610001 25632000 21999 6
Deletion Chr12 25611001 25627000 15999 OsKitaake12g211000
Deletion Chr6 25775001 25812000 36999 4
Deletion Chr4 25779001 25809000 29999 9
Deletion Chr7 25795001 25817000 21999 2
Deletion Chr12 25820001 25847000 26999
Deletion Chr2 25825001 25843000 17999
Deletion Chr11 25850001 25883000 32999 OsKitaake11g208100
Deletion Chr11 25945001 25955000 9999 2
Deletion Chr4 25975001 26006000 30999 6
Deletion Chr7 26075001 26092000 16999
Deletion Chr11 26213001 26225000 11999 OsKitaake11g211700
Deletion Chr4 26328001 26351000 22999 OsKitaake04g188000
Deletion Chr5 26334001 26382000 47999 6
Deletion Chr2 26354001 26395000 40999 6
Deletion Chr11 26372001 26454000 81999 17
Deletion Chr7 26386001 26410000 23999 3
Deletion Chr8 26454001 26471000 16999 2
Deletion Chr11 26472001 26501000 28999 2
Deletion Chr4 26536001 26548000 11999 OsKitaake04g190500
Deletion Chr8 26571001 26639000 67999 8
Deletion Chr7 26595001 26614000 18999 4
Deletion Chr5 26608001 26621000 12999 5
Deletion Chr5 26710001 26732000 21999 4
Deletion Chr8 26803001 26827000 23999 3
Deletion Chr11 26807001 26835000 27999 OsKitaake11g218200
Deletion Chr3 26811001 26828000 16999
Deletion Chr7 26841001 26869000 27999 2
Deletion Chr4 26956001 26996000 39999 7
Deletion Chr7 27027001 27055000 27999 3
Deletion Chr11 27053001 27097000 43999 8
Deletion Chr5 27092001 27121000 28999 8
Deletion Chr4 27110001 27136000 25999 3
Deletion Chr7 27134001 27166000 31999 4
Deletion Chr3 27242001 27259000 16999
Deletion Chr11 27289001 27305000 15999
Deletion Chr3 27315001 27333000 17999 5
Deletion Chr7 27328001 27406000 77999 3
Deletion Chr4 27330001 27361000 30999 5
Deletion Chr8 27331001 27358000 26999 5
Deletion Chr4 27442001 27465000 22999 3
Deletion Chr7 27468001 27487000 18999 OsKitaake07g255500
Deletion Chr3 27471001 27492000 20999 3
Deletion Chr8 27507001 27526000 18999 OsKitaake08g227557
Deletion Chr7 27560001 27581000 20999 6
Deletion Chr7 27720001 27756000 35999 4
Deletion Chr7 27820001 27866000 45999 8
Deletion Chr2 27828001 27881000 52999 16
Deletion Chr5 28059001 28088000 28999 4
Deletion Chr4 28067001 28085000 17999 OsKitaake04g209000
Deletion Chr2 28185001 28228000 42999 3
Deletion Chr8 28275001 28309000 33999 4
Deletion Chr11 28340001 28386000 45999
Deletion Chr2 28428001 28453000 24999 OsKitaake02g286300
Deletion Chr6 28492001 28544000 51999 9
Deletion Chr2 28659001 28686000 26999 4
Deletion Chr8 28681001 28697000 15999 3
Deletion Chr3 28755001 28773000 17999 2
Deletion Chr7 28791001 28826000 34999 4
Deletion Chr5 28852001 28867000 14999
Deletion Chr2 28903001 28919000 15999 3
Deletion Chr4 28978001 28993000 14999 4
Deletion Chr7 29082001 29093000 10999 2
Deletion Chr3 29127001 29159000 31999 8
Deletion Chr1 29144001 29173000 28999 7
Deletion Chr11 29319001 29359000 39999
Deletion Chr3 29321001 29380000 58999 8
Deletion Chr1 29336001 29380000 43999 16
Deletion Chr5 29399001 29414000 14999
Deletion Chr4 29523001 29550000 26999 OsKitaake04g226500
Deletion Chr2 29561282 29561285 3
Deletion Chr3 29629001 29650000 20999 3
Deletion Chr4 29666001 29687000 20999 3
Deletion Chr2 29715001 29736000 20999 5
Deletion Chr3 29808001 29835000 26999 3
Deletion Chr1 30188001 30222000 33999 3
Deletion Chr3 30192001 30216000 23999 4
Deletion Chr1 30238001 30254000 15999 3
Deletion Chr3 30349001 30378000 28999 3
Deletion Chr4 30459001 30477000 17999 2
Deletion Chr2 30467001 30477000 9999 OsKitaake02g310700
Deletion Chr1 30584001 30613000 28999 4
Deletion Chr3 30594001 30619000 24999
Deletion Chr6 30630001 30657000 26999 4
Deletion Chr4 30715001 30732000 16999 2
Deletion Chr3 30740001 30760000 19999
Deletion Chr1 30820001 30851000 30999 7
Deletion Chr4 30821001 30846000 24999 7
Deletion Chr2 30857001 30876000 18999 OsKitaake02g314900
Deletion Chr4 30970001 31000000 29999
Deletion Chr3 31267001 31298000 30999 5
Deletion Chr1 31349001 31373000 23999 OsKitaake01g314500
Deletion Chr4 31358001 31381000 22999 6
Deletion Chr4 31479001 31520000 40999 6
Deletion Chr1 31790001 31821000 30999 7
Deletion Chr2 31874001 31907000 32999 4
Deletion Chr4 31895001 31927000 31999 5
Deletion Chr2 31948001 31965000 16999 2
Deletion Chr3 31949001 31977000 27999 9
Deletion Chr4 32011001 32063000 51999 5
Deletion Chr1 32027001 32045000 17999 OsKitaake01g322800
Deletion Chr2 32099001 32126000 26999 2
Deletion Chr3 32117001 32144000 26999 6
Deletion Chr2 32173001 32186000 12999 OsKitaake02g328900
Deletion Chr4 32182001 32221000 38999 6
Deletion Chr2 32620001 32635000 14999 4
Deletion Chr4 32839001 32850000 10999 2
Deletion Chr1 32892001 32918000 25999 7
Deletion Chr2 32993001 33027000 33999 4
Deletion Chr4 33008001 33021000 12999 4
Deletion Chr4 33096001 33123000 26999 4
Deletion Chr1 33201001 33221000 19999 4
Deletion Chr1 33293001 33335000 41999 9
Deletion Chr1 33403001 33423000 19999 5
Deletion Chr4 33412001 33508000 95999 14
Deletion Chr1 33450001 33481000 30999 2
Deletion Chr4 33561001 33596000 34999 12
Deletion Chr2 33655001 33711000 55999 10
Deletion Chr1 33673001 33707000 33999 8
Deletion Chr1 33787001 33819000 31999 5
Deletion Chr3 33800001 33826000 25999 3
Deletion Chr3 33829441 33829450 9
Deletion Chr1 34023001 34044000 20999 7
Deletion Chr1 34122001 34151000 28999 OsKitaake01g351700
Deletion Chr2 34250001 34266000 15999 OsKitaake02g356000
Deletion Chr2 34343001 34352000 8999 2
Deletion Chr4 34546001 34583000 36999 7
Deletion Chr2 34559001 34591000 31999 4
Deletion Chr2 34689001 34715000 25999 3
Deletion Chr2 35039001 35057000 17999 5
Deletion Chr1 35069001 35107000 37999 2
Deletion Chr3 35204001 35228000 23999 3
Deletion Chr1 35257001 35283000 25999 3
Deletion Chr4 35373001 35422000 48999 7
Deletion Chr1 35415001 35442000 26999 7
Deletion Chr3 35705001 35725000 19999 2
Deletion Chr3 35751001 35789000 37999 11
Deletion Chr3 35834001 35873000 38999 10
Deletion Chr4 35858001 35885000 26999 5
Deletion Chr1 35869001 35886000 16999 OsKitaake01g380200
Deletion Chr2 35959001 36037000 77999 10
Deletion Chr3 36024001 36038000 13999 3
Deletion Chr4 36153001 36182000 28999 4
Deletion Chr3 36527001 36556000 28999 7
Deletion Chr1 36573001 36601000 27999 2
Deletion Chr1 37017001 37036000 18999
Deletion Chr1 37214001 37239000 24999 4
Deletion Chr1 37613001 37623000 9999 OsKitaake01g401200
Deletion Chr1 37755001 37786000 30999 4
Deletion Chr1 38102001 38142000 39999 6
Deletion Chr1 38720337 38720338 1 OsKitaake01g414100
Deletion Chr1 39524001 39542000 17999 3
Deletion Chr1 39740001 39804000 63999 13
Deletion Chr1 40403001 40432000 28999 4
Deletion Chr1 41560001 41597000 36999 2
Deletion Chr1 42198001 42225000 26999 6
Deletion Chr1 42297001 42341000 43999 2
Deletion Chr1 42974001 42998000 23999 5
Deletion Chr1 43053001 43074000 20999 3
Deletion Chr1 43132001 43186000 53999 8
Deletion Chr1 43284001 43306000 21999 3
Deletion Chr1 43337001 43354000 16999 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22163279 22163282 2
Insertion Chr8 9393884 9393888 3
Insertion Chr9 20801238 20801241 2
Insertion Chr5 30256122 30256124 1
Insertion Chr8 2510172 2510174 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 21726109 21944591 OsKitaake07g182200
Inversion Chr7 21738599 21944888

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4305725 Chr7 15245523
Translocation Chr10 4306025 Chr7 15227728 OsKitaake07g127400
Translocation Chr6 6349627 Chr1 23555342
Translocation Chr6 6353382 Chr1 23555348
Translocation Chr10 8667986 Chr1 17284457
Translocation Chr12 18803811 Chr5 22244149

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8309427	T-C	Homo	INTERGENIC
SBS	Chr1	24849199	G-A	Hetero	INTERGENIC
SBS	Chr1	36322219	G-A	Hetero	INTERGENIC
SBS	Chr1	39711316	C-T	Homo	INTERGENIC
SBS	Chr2	33426849	G-A	Homo	INTERGENIC
SBS	Chr2	33776487	A-T	Homo	INTERGENIC
SBS	Chr3	2780022	C-T	Hetero	INTERGENIC
SBS	Chr3	17542705	A-T	Hetero	INTERGENIC
SBS	Chr3	19223374	A-G	Homo	INTERGENIC
SBS	Chr3	21521095	T-C	Hetero	INTERGENIC
SBS	Chr4	14247141	C-T	Hetero	INTERGENIC
SBS	Chr4	22315115	G-A	Hetero	INTERGENIC
SBS	Chr4	25393856	T-A	Hetero	INTERGENIC
SBS	Chr4	27202422	G-A	Hetero	INTERGENIC
SBS	Chr4	28343822	C-A	Hetero	INTERGENIC
SBS	Chr7	6246602	T-A	Homo	INTERGENIC
SBS	Chr7	12735865	A-G	Hetero	INTERGENIC
SBS	Chr7	16946141	G-A	Homo	INTRON
SBS	Chr8	9945597	G-A	Homo	INTERGENIC
SBS	Chr8	12006646	C-T	Hetero	INTERGENIC
SBS	Chr9	1414880	A-C	Hetero	INTRON
SBS	Chr9	5673440	G-T	Hetero	INTERGENIC
SBS	Chr10	16223341	C-T	Homo	INTERGENIC
SBS	Chr11	5055104	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr7	22163279	22163282	2
Insertion	Chr8	9393884	9393888	3
Insertion	Chr9	20801238	20801241	2
Insertion	Chr5	30256122	30256124	1
Insertion	Chr8	2510172	2510174	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21726109	21944591	OsKitaake07g182200
Inversion	Chr7	21738599	21944888

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes