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| Mutant Information |
|---|
| Mutant Name | FN3033-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3033-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18653654 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 18973099 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27140369 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29000960 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30888440 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 35414088 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35414090 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35414103 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7659401 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 15400029 | A-T | Homo | INTRON | |
| SBS | Chr2 | 15400030 | A-T | Homo | INTRON | |
| SBS | Chr2 | 30836376 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 7149892 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 8502102 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18001348 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18358102 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31336188 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 25678627 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 32072065 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3111479 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 7109863 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 12170113 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14854732 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 17246685 | T-A | Homo | INTRON | |
| SBS | Chr5 | 17246686 | G-A | Homo | INTRON | |
| SBS | Chr7 | 10509103 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23814083 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 24588491 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 13639957 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2193405 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2406179 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12111218 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2074093 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 2174800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2174819 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6629140 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 21260016 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25151047 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 4195982 | 4195998 | 16 | OsKitaake01g056100 |
| Deletion | Chr11 | 4942001 | 5253000 | 310999 | 34 |
| Deletion | Chr5 | 6034468 | 6034470 | 2 | |
| Deletion | Chr8 | 6967319 | 6967328 | 9 | |
| Deletion | Chr5 | 8204324 | 8204326 | 2 | |
| Deletion | Chr6 | 10019777 | 10019779 | 2 | |
| Deletion | Chr8 | 12845098 | 12845099 | 1 | |
| Deletion | Chr2 | 15420460 | 15420463 | 3 | |
| Deletion | Chr4 | 21635020 | 21635021 | 1 | |
| Deletion | Chr4 | 22461820 | 22461828 | 8 | |
| Deletion | Chr7 | 24581622 | 24581624 | 2 | |
| Deletion | Chr8 | 26192319 | 26192324 | 5 | |
| Deletion | Chr5 | 27396987 | 27396988 | 1 | OsKitaake05g248500 |
| Deletion | Chr2 | 34236345 | 34236347 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 31983620 | 31983625 | 4 | |
| Insertion | Chr5 | 176980 | 176984 | 3 | |
| Insertion | Chr8 | 24269446 | 24269449 | 2 | |
| Insertion | Chr2 | 6961503 | 6961505 | 1 |