Search Kitaake

Mutant Information

Mutant Name	FN3050-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3050-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1375659 G-T Homo INTERGENIC
SBS Chr1 7169803 C-T Hetero INTRON
SBS Chr1 17345094 A-C Homo INTRON
SBS Chr1 18401099 A-G Homo INTERGENIC
SBS Chr2 3652809 G-A Homo INTERGENIC
SBS Chr2 10757189 C-A Hetero INTERGENIC
SBS Chr2 13084425 G-T Homo INTERGENIC
SBS Chr2 14964954 G-C Hetero INTERGENIC
SBS Chr2 17174931 C-G Hetero INTERGENIC
SBS Chr2 37132660 G-A Hetero INTERGENIC
SBS Chr3 17470640 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g215100
SBS Chr3 18062381 G-A Homo INTERGENIC
SBS Chr4 3477322 C-T Homo INTERGENIC
SBS Chr4 4303593 A-G Homo INTERGENIC
SBS Chr4 22538277 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 30313740 A-C Hetero INTERGENIC
SBS Chr5 20973592 A-T Homo INTERGENIC
SBS Chr5 22070697 G-A Homo INTERGENIC
SBS Chr5 29012673 C-T Homo INTERGENIC
SBS Chr6 14899139 G-A Hetero INTERGENIC
SBS Chr6 22069582 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g194200
SBS Chr6 22069585 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g194200
SBS Chr6 28370206 C-T Hetero INTERGENIC
SBS Chr8 95212 T-C Hetero INTERGENIC
SBS Chr8 4167429 T-C Homo UTR_3_PRIME
SBS Chr8 7143147 G-A Homo INTERGENIC
SBS Chr9 86640 C-T Hetero INTERGENIC
SBS Chr9 3438035 G-A Homo INTERGENIC
SBS Chr9 5948853 A-T Hetero INTRON
SBS Chr9 8582279 C-A Hetero INTERGENIC
SBS Chr9 15626616 G-A Hetero INTERGENIC
SBS Chr10 16118047 G-A Hetero INTERGENIC
SBS Chr11 3929891 G-T Hetero INTERGENIC
SBS Chr11 12168045 G-A Hetero INTERGENIC
SBS Chr11 12965584 G-C Homo INTERGENIC
SBS Chr11 15603007 A-G Homo UTR_3_PRIME
SBS Chr11 24188658 A-G Homo INTERGENIC
SBS Chr12 11334289 C-T Hetero INTERGENIC
SBS Chr12 16424455 C-T Hetero INTERGENIC
SBS Chr12 17220400 C-A Hetero INTERGENIC
SBS Chr12 17220401 C-T Hetero INTERGENIC
SBS Chr12 19214515 T-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1115001 1238000 122999 12
Deletion Chr10 3550935 3550944 9
Deletion Chr7 6086355 6086359 4
Deletion Chr4 10507868 10507870 2
Deletion Chr7 11580717 11580724 7
Deletion Chr12 13342001 13367000 24999 2
Deletion Chr8 13777582 13777583 1
Deletion Chr1 16219355 16219358 3
Deletion Chr8 17607636 17607639 3
Deletion Chr8 18333266 18333268 2
Deletion Chr11 22018008 22018013 5
Deletion Chr5 22411876 22411878 2
Deletion Chr2 25301333 25301334 1
Deletion Chr1 27939263 27939267 4
Deletion Chr1 29427008 29427010 2
Deletion Chr5 29533488 29533489 1
Deletion Chr3 31377912 31377916 4 OsKitaake03g330800
Deletion Chr2 34978184 34978193 9
Deletion Chr1 41673877 41673878 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2892891 2892893 1
Insertion Chr3 16171289 16171292 2
Insertion Chr8 29021133 29021139 5

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 27779870 28266664 2
Inversion Chr4 27779880 28266666 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12695168 Chr1 37986629
Translocation Chr7 12696397 Chr1 37841747
Translocation Chr8 21907221 Chr5 25558910 2
Translocation Chr8 21907345 Chr5 25558907 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1375659	G-T	Homo	INTERGENIC
SBS	Chr1	7169803	C-T	Hetero	INTRON
SBS	Chr1	17345094	A-C	Homo	INTRON
SBS	Chr1	18401099	A-G	Homo	INTERGENIC
SBS	Chr2	3652809	G-A	Homo	INTERGENIC
SBS	Chr2	10757189	C-A	Hetero	INTERGENIC
SBS	Chr2	13084425	G-T	Homo	INTERGENIC
SBS	Chr2	14964954	G-C	Hetero	INTERGENIC
SBS	Chr2	17174931	C-G	Hetero	INTERGENIC
SBS	Chr2	37132660	G-A	Hetero	INTERGENIC
SBS	Chr3	17470640	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g215100
SBS	Chr3	18062381	G-A	Homo	INTERGENIC
SBS	Chr4	3477322	C-T	Homo	INTERGENIC
SBS	Chr4	4303593	A-G	Homo	INTERGENIC
SBS	Chr4	22538277	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30313740	A-C	Hetero	INTERGENIC
SBS	Chr5	20973592	A-T	Homo	INTERGENIC
SBS	Chr5	22070697	G-A	Homo	INTERGENIC
SBS	Chr5	29012673	C-T	Homo	INTERGENIC
SBS	Chr6	14899139	G-A	Hetero	INTERGENIC
SBS	Chr6	22069582	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g194200
SBS	Chr6	22069585	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g194200
SBS	Chr6	28370206	C-T	Hetero	INTERGENIC
SBS	Chr8	95212	T-C	Hetero	INTERGENIC
SBS	Chr8	4167429	T-C	Homo	UTR_3_PRIME
SBS	Chr8	7143147	G-A	Homo	INTERGENIC
SBS	Chr9	86640	C-T	Hetero	INTERGENIC
SBS	Chr9	3438035	G-A	Homo	INTERGENIC
SBS	Chr9	5948853	A-T	Hetero	INTRON
SBS	Chr9	8582279	C-A	Hetero	INTERGENIC
SBS	Chr9	15626616	G-A	Hetero	INTERGENIC
SBS	Chr10	16118047	G-A	Hetero	INTERGENIC
SBS	Chr11	3929891	G-T	Hetero	INTERGENIC
SBS	Chr11	12168045	G-A	Hetero	INTERGENIC
SBS	Chr11	12965584	G-C	Homo	INTERGENIC
SBS	Chr11	15603007	A-G	Homo	UTR_3_PRIME
SBS	Chr11	24188658	A-G	Homo	INTERGENIC
SBS	Chr12	11334289	C-T	Hetero	INTERGENIC
SBS	Chr12	16424455	C-T	Hetero	INTERGENIC
SBS	Chr12	17220400	C-A	Hetero	INTERGENIC
SBS	Chr12	17220401	C-T	Hetero	INTERGENIC
SBS	Chr12	19214515	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1115001	1238000	122999	12
Deletion	Chr10	3550935	3550944	9
Deletion	Chr7	6086355	6086359	4
Deletion	Chr4	10507868	10507870	2
Deletion	Chr7	11580717	11580724	7
Deletion	Chr12	13342001	13367000	24999	2
Deletion	Chr8	13777582	13777583	1
Deletion	Chr1	16219355	16219358	3
Deletion	Chr8	17607636	17607639	3
Deletion	Chr8	18333266	18333268	2
Deletion	Chr11	22018008	22018013	5
Deletion	Chr5	22411876	22411878	2
Deletion	Chr2	25301333	25301334	1
Deletion	Chr1	27939263	27939267	4
Deletion	Chr1	29427008	29427010	2
Deletion	Chr5	29533488	29533489	1
Deletion	Chr3	31377912	31377916	4	OsKitaake03g330800
Deletion	Chr2	34978184	34978193	9
Deletion	Chr1	41673877	41673878	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	27779870	28266664	2
Inversion	Chr4	27779880	28266666	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes