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Mutant Information

Mutant Name	FN3058-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3058-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22063140 A-G Hetero INTERGENIC
SBS Chr1 24314957 A-T Hetero INTERGENIC
SBS Chr2 10747864 C-T Hetero INTERGENIC
SBS Chr2 16685555 G-A Hetero INTERGENIC
SBS Chr2 31511490 C-A Hetero INTERGENIC
SBS Chr3 3828815 A-T Hetero INTERGENIC
SBS Chr3 5700574 G-A Hetero INTERGENIC
SBS Chr3 8430252 G-C Homo INTERGENIC
SBS Chr3 18348772 C-T Hetero INTERGENIC
SBS Chr3 20232587 C-G Hetero INTERGENIC
SBS Chr3 20845445 G-A Hetero INTERGENIC
SBS Chr3 32089983 C-A Hetero UTR_3_PRIME
SBS Chr4 4410427 G-A Homo INTERGENIC
SBS Chr4 12873526 C-G Hetero INTRON
SBS Chr4 17670620 T-A Hetero INTERGENIC
SBS Chr4 20464126 A-C Hetero INTERGENIC
SBS Chr5 15121478 C-T Hetero INTERGENIC
SBS Chr6 11408053 C-T Homo INTERGENIC
SBS Chr6 17461826 C-T Homo INTERGENIC
SBS Chr6 21430156 G-T Hetero INTERGENIC
SBS Chr7 13032050 C-T Hetero INTERGENIC
SBS Chr7 18277781 C-T Hetero INTRON
SBS Chr8 1868741 C-T Hetero INTERGENIC
SBS Chr8 9522188 T-C Homo INTERGENIC
SBS Chr9 17008465 G-A Hetero INTERGENIC
SBS Chr11 10108532 G-A Hetero UTR_3_PRIME
SBS Chr11 22710213 G-T Homo INTRON
SBS Chr12 1420411 C-T Hetero INTERGENIC
SBS Chr12 23957419 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1517001 1744000 226999 9
Deletion Chr10 3273033 3273043 10
Deletion Chr4 3662385 3662388 3 OsKitaake04g017950
Deletion Chr7 5824164 5824171 7
Deletion Chr10 9045377 9045384 7
Deletion Chr5 9175676 9175678 2
Deletion Chr3 9883355 9883357 2
Deletion Chr7 14180989 14180991 2
Deletion Chr11 14981070 14981071 1
Deletion Chr6 15905528 15905531 3
Deletion Chr1 16175950 16175974 24
Deletion Chr4 17991831 17991838 7
Deletion Chr9 18136884 18136885 1
Deletion Chr9 19194260 19194273 13
Deletion Chr1 20969281 20969287 6
Deletion Chr5 22223072 22223082 10
Deletion Chr7 22272337 22272339 2
Deletion Chr1 22948171 22948173 2
Deletion Chr10 23021481 23021482 1 OsKitaake10g193000
Deletion Chr3 23447173 23447175 2
Deletion Chr6 26586842 26586843 1
Deletion Chr8 28634402 28634403 1
Deletion Chr6 29794865 29794873 8 OsKitaake06g278400
Deletion Chr4 30321308 30321318 10
Deletion Chr3 30348872 30348900 28
Deletion Chr2 30742974 30742977 3
Deletion Chr3 33540675 33540693 18
Deletion Chr3 34555001 34632000 76999 13

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 1215132 1215134 1
Insertion Chr5 284811 284815 3
Insertion Chr5 20142344 20142347 2
Insertion Chr9 21434586 21434589 2
Insertion Chr11 18578331 18578334 2
Insertion Chr12 85435 85438 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 20046749 20644454 OsKitaake05g164700
Inversion Chr5 20046771 20644456 OsKitaake05g164700
Inversion Chr4 27104937 27402527
Inversion Chr4 27104949 27402529

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 53460 Chr1 17629603
Translocation Chr6 53746 Chr1 17629637 OsKitaake01g180000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22063140	A-G	Hetero	INTERGENIC
SBS	Chr1	24314957	A-T	Hetero	INTERGENIC
SBS	Chr2	10747864	C-T	Hetero	INTERGENIC
SBS	Chr2	16685555	G-A	Hetero	INTERGENIC
SBS	Chr2	31511490	C-A	Hetero	INTERGENIC
SBS	Chr3	3828815	A-T	Hetero	INTERGENIC
SBS	Chr3	5700574	G-A	Hetero	INTERGENIC
SBS	Chr3	8430252	G-C	Homo	INTERGENIC
SBS	Chr3	18348772	C-T	Hetero	INTERGENIC
SBS	Chr3	20232587	C-G	Hetero	INTERGENIC
SBS	Chr3	20845445	G-A	Hetero	INTERGENIC
SBS	Chr3	32089983	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	4410427	G-A	Homo	INTERGENIC
SBS	Chr4	12873526	C-G	Hetero	INTRON
SBS	Chr4	17670620	T-A	Hetero	INTERGENIC
SBS	Chr4	20464126	A-C	Hetero	INTERGENIC
SBS	Chr5	15121478	C-T	Hetero	INTERGENIC
SBS	Chr6	11408053	C-T	Homo	INTERGENIC
SBS	Chr6	17461826	C-T	Homo	INTERGENIC
SBS	Chr6	21430156	G-T	Hetero	INTERGENIC
SBS	Chr7	13032050	C-T	Hetero	INTERGENIC
SBS	Chr7	18277781	C-T	Hetero	INTRON
SBS	Chr8	1868741	C-T	Hetero	INTERGENIC
SBS	Chr8	9522188	T-C	Homo	INTERGENIC
SBS	Chr9	17008465	G-A	Hetero	INTERGENIC
SBS	Chr11	10108532	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	22710213	G-T	Homo	INTRON
SBS	Chr12	1420411	C-T	Hetero	INTERGENIC
SBS	Chr12	23957419	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1517001	1744000	226999	9
Deletion	Chr10	3273033	3273043	10
Deletion	Chr4	3662385	3662388	3	OsKitaake04g017950
Deletion	Chr7	5824164	5824171	7
Deletion	Chr10	9045377	9045384	7
Deletion	Chr5	9175676	9175678	2
Deletion	Chr3	9883355	9883357	2
Deletion	Chr7	14180989	14180991	2
Deletion	Chr11	14981070	14981071	1
Deletion	Chr6	15905528	15905531	3
Deletion	Chr1	16175950	16175974	24
Deletion	Chr4	17991831	17991838	7
Deletion	Chr9	18136884	18136885	1
Deletion	Chr9	19194260	19194273	13
Deletion	Chr1	20969281	20969287	6
Deletion	Chr5	22223072	22223082	10
Deletion	Chr7	22272337	22272339	2
Deletion	Chr1	22948171	22948173	2
Deletion	Chr10	23021481	23021482	1	OsKitaake10g193000
Deletion	Chr3	23447173	23447175	2
Deletion	Chr6	26586842	26586843	1
Deletion	Chr8	28634402	28634403	1
Deletion	Chr6	29794865	29794873	8	OsKitaake06g278400
Deletion	Chr4	30321308	30321318	10
Deletion	Chr3	30348872	30348900	28
Deletion	Chr2	30742974	30742977	3
Deletion	Chr3	33540675	33540693	18
Deletion	Chr3	34555001	34632000	76999	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	20046749	20644454	OsKitaake05g164700
Inversion	Chr5	20046771	20644456	OsKitaake05g164700
Inversion	Chr4	27104937	27402527
Inversion	Chr4	27104949	27402529

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes