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Mutant Information

Mutant Name	FN3064-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3064-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 263323 A-G Homo SPLICE_SITE_REGION
SBS Chr1 7342135 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g092000
SBS Chr1 20733576 G-T Homo INTERGENIC
SBS Chr2 7820407 C-T Homo INTERGENIC
SBS Chr2 7820409 A-G Homo INTERGENIC
SBS Chr2 10841787 T-G Hetero INTRON
SBS Chr2 19266115 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g188800
SBS Chr2 19625341 C-A Hetero INTERGENIC
SBS Chr2 25260153 C-T Homo INTERGENIC
SBS Chr2 31822168 A-T Hetero INTERGENIC
SBS Chr2 34906361 G-A Hetero INTERGENIC
SBS Chr3 1230815 G-T Hetero INTRON
SBS Chr3 5988479 G-A Hetero INTRON
SBS Chr3 14801255 C-T Hetero INTERGENIC
SBS Chr3 29480668 A-T Hetero INTERGENIC
SBS Chr4 10541480 C-A Homo INTRON
SBS Chr4 18929890 G-A Hetero INTERGENIC
SBS Chr4 20096859 G-A Hetero INTERGENIC
SBS Chr4 24635694 T-A Hetero INTERGENIC
SBS Chr6 4915448 A-T Hetero INTRON
SBS Chr6 6446845 T-C Hetero INTERGENIC
SBS Chr6 8678116 T-A Homo INTERGENIC
SBS Chr6 11880546 T-C Homo UTR_3_PRIME
SBS Chr6 18898290 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g171000
SBS Chr6 21379437 T-A Homo INTERGENIC
SBS Chr6 26784811 C-T Homo INTERGENIC
SBS Chr7 5005560 C-T Homo INTERGENIC
SBS Chr7 6298415 G-A Hetero INTERGENIC
SBS Chr7 10691255 C-T Hetero INTERGENIC
SBS Chr7 13694336 G-A Hetero INTERGENIC
SBS Chr7 25599396 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 28090762 A-G Hetero SPLICE_SITE_REGION
SBS Chr8 2033636 C-T Hetero INTERGENIC
SBS Chr8 5045483 T-A Hetero INTERGENIC
SBS Chr8 5493433 T-A Hetero INTERGENIC
SBS Chr9 18866628 C-T Homo INTERGENIC
SBS Chr9 18960654 G-T Homo UTR_3_PRIME
SBS Chr10 11925557 G-A Homo INTERGENIC
SBS Chr10 14229676 G-A Homo INTERGENIC
SBS Chr11 15152303 G-A Hetero INTERGENIC
SBS Chr11 15152304 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 11001 115000 103999 13
Deletion Chr7 3500494 3500497 3
Deletion Chr5 4643796 4643797 1
Deletion Chr11 10296483 10296491 8
Deletion Chr6 11402957 11402958 1
Deletion Chr1 12958222 12958224 2
Deletion Chr6 13222198 13222207 9
Deletion Chr4 17507001 17580000 72999 4
Deletion Chr10 18667883 18667885 2
Deletion Chr6 20210675 20210700 25
Deletion Chr3 24054566 24054570 4
Deletion Chr6 25760693 25760700 7
Deletion Chr3 34091001 34152000 60999 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30371996 30371999 2
Insertion Chr7 26012138 26012141 2
Insertion Chr11 11876774 11876777 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9977783 10233786
Inversion Chr10 9977789 10233794
Inversion Chr2 30875779 30894744 OsKitaake02g315200
Inversion Chr2 30875782 30894748 OsKitaake02g315200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 114889 Chr1 41038463 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	263323	A-G	Homo	SPLICE_SITE_REGION
SBS	Chr1	7342135	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g092000
SBS	Chr1	20733576	G-T	Homo	INTERGENIC
SBS	Chr2	7820407	C-T	Homo	INTERGENIC
SBS	Chr2	7820409	A-G	Homo	INTERGENIC
SBS	Chr2	10841787	T-G	Hetero	INTRON
SBS	Chr2	19266115	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g188800
SBS	Chr2	19625341	C-A	Hetero	INTERGENIC
SBS	Chr2	25260153	C-T	Homo	INTERGENIC
SBS	Chr2	31822168	A-T	Hetero	INTERGENIC
SBS	Chr2	34906361	G-A	Hetero	INTERGENIC
SBS	Chr3	1230815	G-T	Hetero	INTRON
SBS	Chr3	5988479	G-A	Hetero	INTRON
SBS	Chr3	14801255	C-T	Hetero	INTERGENIC
SBS	Chr3	29480668	A-T	Hetero	INTERGENIC
SBS	Chr4	10541480	C-A	Homo	INTRON
SBS	Chr4	18929890	G-A	Hetero	INTERGENIC
SBS	Chr4	20096859	G-A	Hetero	INTERGENIC
SBS	Chr4	24635694	T-A	Hetero	INTERGENIC
SBS	Chr6	4915448	A-T	Hetero	INTRON
SBS	Chr6	6446845	T-C	Hetero	INTERGENIC
SBS	Chr6	8678116	T-A	Homo	INTERGENIC
SBS	Chr6	11880546	T-C	Homo	UTR_3_PRIME
SBS	Chr6	18898290	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g171000
SBS	Chr6	21379437	T-A	Homo	INTERGENIC
SBS	Chr6	26784811	C-T	Homo	INTERGENIC
SBS	Chr7	5005560	C-T	Homo	INTERGENIC
SBS	Chr7	6298415	G-A	Hetero	INTERGENIC
SBS	Chr7	10691255	C-T	Hetero	INTERGENIC
SBS	Chr7	13694336	G-A	Hetero	INTERGENIC
SBS	Chr7	25599396	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	28090762	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr8	2033636	C-T	Hetero	INTERGENIC
SBS	Chr8	5045483	T-A	Hetero	INTERGENIC
SBS	Chr8	5493433	T-A	Hetero	INTERGENIC
SBS	Chr9	18866628	C-T	Homo	INTERGENIC
SBS	Chr9	18960654	G-T	Homo	UTR_3_PRIME
SBS	Chr10	11925557	G-A	Homo	INTERGENIC
SBS	Chr10	14229676	G-A	Homo	INTERGENIC
SBS	Chr11	15152303	G-A	Hetero	INTERGENIC
SBS	Chr11	15152304	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	11001	115000	103999	13
Deletion	Chr7	3500494	3500497	3
Deletion	Chr5	4643796	4643797	1
Deletion	Chr11	10296483	10296491	8
Deletion	Chr6	11402957	11402958	1
Deletion	Chr1	12958222	12958224	2
Deletion	Chr6	13222198	13222207	9
Deletion	Chr4	17507001	17580000	72999	4
Deletion	Chr10	18667883	18667885	2
Deletion	Chr6	20210675	20210700	25
Deletion	Chr3	24054566	24054570	4
Deletion	Chr6	25760693	25760700	7
Deletion	Chr3	34091001	34152000	60999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9977783	10233786
Inversion	Chr10	9977789	10233794
Inversion	Chr2	30875779	30894744	OsKitaake02g315200
Inversion	Chr2	30875782	30894748	OsKitaake02g315200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes