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Mutant Information

Mutant Name	FN3085-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3085-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2318932 T-A Homo INTERGENIC
SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 11719182 C-G Homo INTERGENIC
SBS Chr1 15692241 C-G Hetero INTERGENIC
SBS Chr1 17770966 C-A Hetero INTERGENIC
SBS Chr1 18554370 C-T Hetero INTRON
SBS Chr1 28957871 A-G Hetero INTERGENIC
SBS Chr2 13579455 A-T Hetero INTERGENIC
SBS Chr2 14314018 A-G Hetero INTERGENIC
SBS Chr2 23893193 G-A Hetero INTRON
SBS Chr2 31340932 C-A Homo INTERGENIC
SBS Chr3 17543894 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g215800
SBS Chr3 21337691 C-A Homo INTERGENIC
SBS Chr4 2370083 C-T Homo INTRON
SBS Chr4 4490538 G-A Hetero INTERGENIC
SBS Chr4 9005821 G-A Hetero UTR_5_PRIME
SBS Chr4 24141805 G-A Homo UTR_3_PRIME
SBS Chr4 24141806 T-A Homo UTR_3_PRIME
SBS Chr4 31402283 T-C Hetero INTERGENIC
SBS Chr5 8372367 C-T Hetero INTERGENIC
SBS Chr5 13242605 C-G Homo INTERGENIC
SBS Chr5 22784427 G-T Homo INTERGENIC
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr6 15849279 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 22546372 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g197800
SBS Chr6 25422807 G-C Homo INTERGENIC
SBS Chr7 8350222 T-C Homo INTERGENIC
SBS Chr7 14776079 A-C Homo INTERGENIC
SBS Chr8 24652491 C-A Hetero INTERGENIC
SBS Chr9 14399436 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g097900
SBS Chr9 14399437 C-T Homo SYNONYMOUS_CODING
SBS Chr9 16696638 G-A Homo INTRON
SBS Chr10 5505038 C-T Hetero INTERGENIC
SBS Chr10 19253963 A-C Hetero INTERGENIC
SBS Chr10 22251609 T-C Hetero INTRON
SBS Chr11 7161687 C-G Hetero INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr12 7224753 A-T Hetero INTERGENIC
SBS Chr12 16983766 G-A Hetero INTERGENIC
SBS Chr12 17587329 G-A Hetero INTERGENIC
SBS Chr12 19311283 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 277460 277466 6
Deletion Chr1 3419774 3419778 4
Deletion Chr12 4527274 4527278 4
Deletion Chr12 11945001 11955000 9999
Deletion Chr1 17045109 17045111 2
Deletion Chr6 17816001 17887000 70999 7
Deletion Chr3 19183124 19183144 20
Deletion Chr1 19783001 19795000 11999
Deletion Chr10 20764001 20820000 55999 9
Deletion Chr4 32813001 33015000 201999 29

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11735798 11735803 4
Insertion Chr2 6892162 6892166 3
Insertion Chr2 19257882 19257885 2
Insertion Chr10 2980946 2980949 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 11945299 12641906
Inversion Chr12 11954561 12642098
Inversion Chr9 14023275 14356154 OsKitaake09g093990
Inversion Chr6 17070966 17886355 OsKitaake06g159800
Inversion Chr10 20767173 21355078 OsKitaake10g168500
Inversion Chr10 20817246 21355081 OsKitaake10g168500
Inversion Chr1 28176659 28847566 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 17480854 Chr4 14223353
Translocation Chr10 20816291 Chr1 28173264
Translocation Chr10 20817233 Chr1 28847552 OsKitaake01g280100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2318932	T-A	Homo	INTERGENIC
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	11719182	C-G	Homo	INTERGENIC
SBS	Chr1	15692241	C-G	Hetero	INTERGENIC
SBS	Chr1	17770966	C-A	Hetero	INTERGENIC
SBS	Chr1	18554370	C-T	Hetero	INTRON
SBS	Chr1	28957871	A-G	Hetero	INTERGENIC
SBS	Chr2	13579455	A-T	Hetero	INTERGENIC
SBS	Chr2	14314018	A-G	Hetero	INTERGENIC
SBS	Chr2	23893193	G-A	Hetero	INTRON
SBS	Chr2	31340932	C-A	Homo	INTERGENIC
SBS	Chr3	17543894	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g215800
SBS	Chr3	21337691	C-A	Homo	INTERGENIC
SBS	Chr4	2370083	C-T	Homo	INTRON
SBS	Chr4	4490538	G-A	Hetero	INTERGENIC
SBS	Chr4	9005821	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	24141805	G-A	Homo	UTR_3_PRIME
SBS	Chr4	24141806	T-A	Homo	UTR_3_PRIME
SBS	Chr4	31402283	T-C	Hetero	INTERGENIC
SBS	Chr5	8372367	C-T	Hetero	INTERGENIC
SBS	Chr5	13242605	C-G	Homo	INTERGENIC
SBS	Chr5	22784427	G-T	Homo	INTERGENIC
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr6	15849279	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	22546372	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g197800
SBS	Chr6	25422807	G-C	Homo	INTERGENIC
SBS	Chr7	8350222	T-C	Homo	INTERGENIC
SBS	Chr7	14776079	A-C	Homo	INTERGENIC
SBS	Chr8	24652491	C-A	Hetero	INTERGENIC
SBS	Chr9	14399436	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g097900
SBS	Chr9	14399437	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	16696638	G-A	Homo	INTRON
SBS	Chr10	5505038	C-T	Hetero	INTERGENIC
SBS	Chr10	19253963	A-C	Hetero	INTERGENIC
SBS	Chr10	22251609	T-C	Hetero	INTRON
SBS	Chr11	7161687	C-G	Hetero	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr12	7224753	A-T	Hetero	INTERGENIC
SBS	Chr12	16983766	G-A	Hetero	INTERGENIC
SBS	Chr12	17587329	G-A	Hetero	INTERGENIC
SBS	Chr12	19311283	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	277460	277466	6
Deletion	Chr1	3419774	3419778	4
Deletion	Chr12	4527274	4527278	4
Deletion	Chr12	11945001	11955000	9999
Deletion	Chr1	17045109	17045111	2
Deletion	Chr6	17816001	17887000	70999	7
Deletion	Chr3	19183124	19183144	20
Deletion	Chr1	19783001	19795000	11999
Deletion	Chr10	20764001	20820000	55999	9
Deletion	Chr4	32813001	33015000	201999	29

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11945299	12641906
Inversion	Chr12	11954561	12642098
Inversion	Chr9	14023275	14356154	OsKitaake09g093990
Inversion	Chr6	17070966	17886355	OsKitaake06g159800
Inversion	Chr10	20767173	21355078	OsKitaake10g168500
Inversion	Chr10	20817246	21355081	OsKitaake10g168500
Inversion	Chr1	28176659	28847566	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes