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| Mutant Information |
|---|
| Mutant Name | FN3090-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3090-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27972131 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 33878001 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g348100 |
| SBS | Chr1 | 43606051 | T-C | Hetero | START_LOST | OsKitaake01g484200 |
| SBS | Chr1 | 44041709 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 19077633 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 31638138 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 34387989 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 137237 | G-A | Homo | INTRON | |
| SBS | Chr3 | 12068077 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 12344943 | A-G | Homo | INTRON | |
| SBS | Chr3 | 22344981 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 25212868 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g266800 |
| SBS | Chr3 | 26514029 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15331602 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 747072 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 3066811 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g042500 |
| SBS | Chr6 | 20513844 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3168603 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g039500 |
| SBS | Chr7 | 24920040 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24851193 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28261923 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2770429 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6591441 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20158708 | C-A | Homo | INTRON | |
| SBS | Chr9 | 21584150 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 19712447 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g146000 |
| SBS | Chr11 | 957545 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7705762 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10398603 | A-C | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 6034896 | 6034900 | 4 | |
| Deletion | Chr4 | 6904224 | 6904228 | 4 | |
| Deletion | Chr8 | 10709283 | 10709285 | 2 | |
| Deletion | Chr4 | 13447073 | 13447074 | 1 | |
| Deletion | Chr6 | 22275682 | 22275683 | 1 | |
| Deletion | Chr11 | 24359423 | 24359428 | 5 | |
| Deletion | Chr1 | 27091351 | 27091357 | 6 | |
| Deletion | Chr6 | 28330180 | 28330186 | 6 | |
| Deletion | Chr2 | 32257385 | 32257392 | 7 | OsKitaake02g329700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 7631309 | 7631312 | 2 | |
| Insertion | Chr9 | 2745957 | 2745959 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 2535008 | 2627137 | 2 |
| Inversion | Chr3 | 2535274 | 2627149 | 2 |
| Inversion | Chr4 | 32895655 | 32941601 | |
| Inversion | Chr4 | 32895663 | 32941608 |