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Mutant Information

Mutant Name	FN3092-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3092-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8888984 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 37488797 A-G Hetero INTERGENIC
SBS Chr1 38908414 G-T Homo INTERGENIC
SBS Chr1 40664582 G-A Homo INTRON
SBS Chr1 43739817 G-A Hetero INTERGENIC
SBS Chr2 2846156 C-T Homo INTERGENIC
SBS Chr2 3671755 C-T Homo INTERGENIC
SBS Chr2 14468648 C-G Hetero INTERGENIC
SBS Chr2 29425489 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g296200
SBS Chr2 30373359 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g309400
SBS Chr3 12170985 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g164800
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Hetero INTERGENIC
SBS Chr4 4623833 A-G Hetero INTERGENIC
SBS Chr4 8213873 G-T Hetero INTERGENIC
SBS Chr4 18153839 A-T Hetero START_GAINED
SBS Chr4 24453997 G-C Homo NON_SYNONYMOUS_CODING OsKitaake04g159200
SBS Chr4 35403908 G-A Homo INTERGENIC
SBS Chr5 14237542 T-C Homo INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr9 1020156 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 7307618 G-A Hetero INTERGENIC
SBS Chr9 10874281 G-C Hetero INTERGENIC
SBS Chr10 7562725 C-T Hetero INTERGENIC
SBS Chr10 10539407 C-T Hetero INTERGENIC
SBS Chr10 11670149 G-A Hetero INTERGENIC
SBS Chr11 11960885 G-A Homo INTERGENIC
SBS Chr11 15605980 A-G Homo SYNONYMOUS_CODING
SBS Chr11 18913694 G-A Homo INTERGENIC
SBS Chr11 20170841 C-T Homo INTERGENIC
SBS Chr12 203868 T-A Homo INTERGENIC

Deletions: 420

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 561001 575000 13999
Deletion Chr9 643001 659000 15999 OsKitaake09g004500
Deletion Chr9 717001 733000 15999
Deletion Chr4 803001 817000 13999 2
Deletion Chr8 912001 926000 13999 2
Deletion Chr9 1033001 1053000 19999
Deletion Chr11 1154001 1169000 14999
Deletion Chr12 1184001 1199000 14999
Deletion Chr8 1307001 1328000 20999 2
Deletion Chr9 1454778 1454780 2
Deletion Chr4 1632001 1643000 10999
Deletion Chr2 1655001 1667000 11999 3
Deletion Chr8 1743001 1758000 14999
Deletion Chr4 2041001 2105000 63999 4
Deletion Chr8 2249001 2262000 12999 OsKitaake08g026800
Deletion Chr12 2779001 2796000 16999 5
Deletion Chr3 2982001 2998000 15999 2
Deletion Chr11 3030001 3051000 20999 2
Deletion Chr9 3118001 3145000 26999
Deletion Chr12 3218001 3241000 22999 2
Deletion Chr6 3265001 3315000 49999 5
Deletion Chr1 3294001 3308000 13999 2
Deletion Chr9 3332001 3348000 15999
Deletion Chr7 3337001 3399000 61999 7
Deletion Chr12 3460001 3477000 16999 OsKitaake12g048900
Deletion Chr4 3484001 3542000 57999 2
Deletion Chr11 3533001 3566000 32999 4
Deletion Chr12 3550001 3570000 19999 OsKitaake12g049700
Deletion Chr11 3613001 3662000 48999 13
Deletion Chr9 3914001 3947000 32999 OsKitaake09g020900
Deletion Chr2 3961001 3982000 20999
Deletion Chr3 3995001 4026000 30999 4
Deletion Chr6 4119001 4139000 19999 OsKitaake06g057700
Deletion Chr7 4159001 4185000 25999 3
Deletion Chr12 4222001 4240000 17999 OsKitaake12g057700
Deletion Chr4 4262001 4305000 42999 2
Deletion Chr12 4388001 4429000 40999 2
Deletion Chr10 4443001 4478000 34999 5
Deletion Chr11 4528001 4552000 23999 OsKitaake11g060300
Deletion Chr7 4533001 4552000 18999 3
Deletion Chr8 4567001 4587000 19999 4
Deletion Chr7 4763001 4826000 62999 6
Deletion Chr12 4791001 4875000 83999 8
Deletion Chr5 4793001 4813000 19999
Deletion Chr4 4858001 4934000 75999 3
Deletion Chr11 4880001 4899000 18999 2
Deletion Chr10 4936001 4981000 44999 2
Deletion Chr7 4958001 5013000 54999 3
Deletion Chr3 5065001 5083000 17999 4
Deletion Chr3 5104001 5116000 11999 2
Deletion Chr11 5113001 5156000 42999 6
Deletion Chr8 5140001 5158000 17999 OsKitaake08g056000
Deletion Chr9 5260001 5289000 28999
Deletion Chr11 5287001 5309000 21999 4
Deletion Chr8 5336001 5382000 45999 3
Deletion Chr9 5380001 5400000 19999 2
Deletion Chr11 5669001 5677000 7999 3
Deletion Chr4 5670001 5700000 29999 OsKitaake04g027900
Deletion Chr11 5773001 5796000 22999 3
Deletion Chr4 5874001 5903000 28999 3
Deletion Chr5 5884001 5917000 32999
Deletion Chr8 5959001 5974000 14999 OsKitaake08g064600
Deletion Chr5 5984001 6021000 36999 OsKitaake05g180600
Deletion Chr10 6045001 6062000 16999 4
Deletion Chr4 6092001 6141000 48999 2
Deletion Chr4 6196001 6220000 23999
Deletion Chr7 6406813 6406814 1
Deletion Chr3 6452001 6465000 12999 5
Deletion Chr1 6497557 6497565 8
Deletion Chr2 6655001 6668000 12999 4
Deletion Chr10 6724001 6754000 29999 3
Deletion Chr7 6860001 6885000 24999
Deletion Chr7 6979001 6992000 12999 9
Deletion Chr5 6989001 7029000 39999 4
Deletion Chr1 7040001 7058000 17999 2
Deletion Chr10 7053001 7072000 18999
Deletion Chr1 7247001 7269000 21999 3
Deletion Chr4 7271001 7291000 19999
Deletion Chr8 7279001 7305000 25999
Deletion Chr11 7365001 7378000 12999
Deletion Chr8 7581001 7628000 46999
Deletion Chr11 7582001 7611000 28999 OsKitaake11g085300
Deletion Chr12 7641001 7667000 25999 2
Deletion Chr10 7717001 7826000 108999 4
Deletion Chr8 7845001 7945000 99999 5
Deletion Chr4 7847001 7865000 17999
Deletion Chr3 8015001 8046000 30999 3
Deletion Chr1 8072001 8089000 16999 OsKitaake01g101200
Deletion Chr5 8219001 8244000 24999
Deletion Chr6 8250001 8284000 33999 4
Deletion Chr4 8332001 8362000 29999
Deletion Chr3 8451001 8472000 20999 OsKitaake03g116100
Deletion Chr8 8669001 8693000 23999 OsKitaake08g079900
Deletion Chr11 8711001 8783000 71999 7
Deletion Chr9 8727001 8753000 25999
Deletion Chr12 8745001 8772000 26999 OsKitaake12g088200
Deletion Chr6 8893001 8914000 20999 OsKitaake06g107200
Deletion Chr8 9254001 9276000 21999 2
Deletion Chr7 9295001 9317000 21999 OsKitaake07g095900
Deletion Chr5 9376001 9408000 31999 OsKitaake05g087100
Deletion Chr12 9473001 9497000 23999 3
Deletion Chr4 9523001 9562000 38999 2
Deletion Chr11 9550001 9644000 93999 4
Deletion Chr10 9554001 9618000 63999 4
Deletion Chr5 9579001 9588000 8999
Deletion Chr7 9583001 9615000 31999
Deletion Chr8 9650001 9677000 26999 OsKitaake08g090800
Deletion Chr8 9762001 9810000 47999
Deletion Chr9 9819001 9857000 37999 2
Deletion Chr11 9822001 9869000 46999 OsKitaake11g101000
Deletion Chr8 9835001 9869000 33999 OsKitaake08g091700
Deletion Chr5 9863001 9887000 23999 OsKitaake05g089500
Deletion Chr12 9941001 9953000 11999
Deletion Chr11 9977001 9992000 14999 OsKitaake11g101701
Deletion Chr8 10068001 10094000 25999
Deletion Chr9 10113001 10128000 14999
Deletion Chr5 10120001 10157000 36999 OsKitaake05g089901
Deletion Chr4 10198001 10215000 16999
Deletion Chr9 10200001 10239000 38999 4
Deletion Chr8 10258001 10271000 12999
Deletion Chr11 10307001 10333000 25999
Deletion Chr8 10387001 10414000 26999 OsKitaake08g093500
Deletion Chr1 10404001 10428000 23999
Deletion Chr9 10538001 10551000 12999 OsKitaake09g065900
Deletion Chr9 10594001 10625000 30999 2
Deletion Chr8 10711001 10766000 54999 5
Deletion Chr12 10802001 10819000 16999 OsKitaake12g100300
Deletion Chr12 10852001 10869000 16999 3
Deletion Chr4 10855001 10911000 55999
Deletion Chr6 10862001 10892000 29999 OsKitaake06g121250
Deletion Chr6 10972001 10985000 12999 OsKitaake06g122200
Deletion Chr11 10987001 11015000 27999 OsKitaake11g106300
Deletion Chr5 10992001 11012000 19999
Deletion Chr4 11057001 11076000 18999
Deletion Chr1 11177001 11208000 30999 OsKitaake01g137600
Deletion Chr4 11180001 11200000 19999
Deletion Chr4 11273001 11301000 27999
Deletion Chr8 11275001 11305000 29999
Deletion Chr1 11309001 11319000 9999
Deletion Chr4 11331001 11357000 25999
Deletion Chr2 11334001 11375000 40999 OsKitaake02g131900
Deletion Chr12 11377001 11400000 22999
Deletion Chr5 11381001 11428000 46999 7
Deletion Chr4 11545001 11560000 14999 2
Deletion Chr11 11633001 11655000 21999
Deletion Chr12 11658160 11658314 154
Deletion Chr5 11668001 11682000 13999 OsKitaake05g095900
Deletion Chr3 11671001 11704000 32999 4
Deletion Chr1 11692001 11718000 25999 OsKitaake01g141100
Deletion Chr11 11794001 11858000 63999 OsKitaake11g110500
Deletion Chr1 11893001 11915000 21999 2
Deletion Chr2 11930001 11950000 19999
Deletion Chr5 11934001 12040000 105999 4
Deletion Chr10 11966001 11990000 23999 4
Deletion Chr8 12040001 12070000 29999
Deletion Chr1 12168001 12175000 6999
Deletion Chr5 12203001 12230000 26999
Deletion Chr4 12204001 12224000 19999 OsKitaake04g059200
Deletion Chr5 12249001 12282000 32999
Deletion Chr3 12292001 12310000 17999
Deletion Chr8 12343001 12358000 14999 OsKitaake08g106500
Deletion Chr6 12374001 12428000 53999 2
Deletion Chr10 12412001 12432000 19999 3
Deletion Chr6 12463001 12514000 50999 3
Deletion Chr6 12539001 12573000 33999 4
Deletion Chr5 12545001 12554000 8999
Deletion Chr1 12651001 12670000 18999
Deletion Chr11 12781001 12802000 20999
Deletion Chr6 12811001 12821000 9999 OsKitaake06g136633
Deletion Chr11 12826001 12847000 20999
Deletion Chr7 12846001 12874000 27999 2
Deletion Chr8 12854001 12893000 38999
Deletion Chr9 12976001 13020000 43999 OsKitaake09g086300
Deletion Chr3 12987001 13023000 35999 6
Deletion Chr11 12995001 13033000 37999 OsKitaake11g114400
Deletion Chr4 13019001 13042000 22999
Deletion Chr5 13039001 13077000 37999 6
Deletion Chr1 13105001 13120000 14999 4
Deletion Chr8 13193001 13276000 82999 OsKitaake08g110140
Deletion Chr5 13267001 13279000 11999
Deletion Chr12 13301001 13316000 14999
Deletion Chr6 13311001 13337000 25999 OsKitaake06g140800
Deletion Chr1 13426001 13440000 13999 OsKitaake01g156400
Deletion Chr5 13487001 13516000 28999
Deletion Chr6 13500001 13522000 21999
Deletion Chr1 13503092 13503093 1
Deletion Chr11 13561001 13603000 41999 2
Deletion Chr5 13727001 13763000 35999 4
Deletion Chr7 13761001 13775000 13999
Deletion Chr5 13779001 13802000 22999 3
Deletion Chr12 13804001 13837000 32999 4
Deletion Chr7 13811001 13833000 21999
Deletion Chr2 13825345 13825655 310
Deletion Chr2 13837961 13837963 2
Deletion Chr6 13886001 13903000 16999 2
Deletion Chr11 13921001 13938000 16999 OsKitaake11g117000
Deletion Chr6 13948001 13977000 28999 3
Deletion Chr2 13974001 13999000 24999
Deletion Chr11 13985001 14006000 20999
Deletion Chr8 13991001 14034000 42999 OsKitaake08g111050
Deletion Chr5 14009001 14028000 18999 OsKitaake05g108300
Deletion Chr4 14010001 14040000 29999 OsKitaake04g067250
Deletion Chr4 14057001 14140000 82999 4
Deletion Chr7 14169001 14204000 34999 2
Deletion Chr5 14442001 14464000 21999 3
Deletion Chr7 14447001 14475000 27999
Deletion Chr5 14474001 14494000 19999 OsKitaake05g110400
Deletion Chr5 14530001 14569000 38999 3
Deletion Chr6 14538001 14606000 67999 4
Deletion Chr6 14695001 14716000 20999 OsKitaake06g149300
Deletion Chr8 14711001 14738000 26999
Deletion Chr5 14807001 14820000 12999 3
Deletion Chr2 14824001 14927000 102999 OsKitaake02g157500
Deletion Chr4 14869001 14910000 40999 2
Deletion Chr12 15024001 15074000 49999 OsKitaake12g118500
Deletion Chr12 15127001 15140000 12999
Deletion Chr5 15175001 15255000 79999 10
Deletion Chr4 15208001 15220000 11999
Deletion Chr4 15330001 15351000 20999 2
Deletion Chr11 15391001 15408000 16999
Deletion Chr6 15453001 15465000 11999 OsKitaake06g152400
Deletion Chr3 15547001 15562000 14999
Deletion Chr5 15556001 15577000 20999 4
Deletion Chr1 15647001 15672000 24999 3
Deletion Chr11 15658001 15688000 29999 2
Deletion Chr6 15677001 15693000 15999 OsKitaake06g152900
Deletion Chr11 15795001 15827000 31999 3
Deletion Chr11 15839001 15897000 57999 3
Deletion Chr7 15888001 15907000 18999
Deletion Chr8 16010001 16081000 70999 6
Deletion Chr3 16013001 16022000 8999 5
Deletion Chr6 16042001 16074000 31999 3
Deletion Chr5 16095001 16114000 18999 OsKitaake05g123500
Deletion Chr6 16104001 16125000 20999 OsKitaake06g154900
Deletion Chr12 16132001 16163000 30999
Deletion Chr10 16240633 16240634 1
Deletion Chr1 16241001 16321000 79999 9
Deletion Chr4 16256001 16301000 44999
Deletion Chr2 16307001 16353000 45999 2
Deletion Chr6 16452001 16463000 10999
Deletion Chr12 16575001 16587000 11999 OsKitaake12g124900
Deletion Chr4 16631001 16671000 39999 2
Deletion Chr1 16649001 16681000 31999 2
Deletion Chr5 16666001 16696000 29999 3
Deletion Chr3 16733001 16750000 16999
Deletion Chr7 16838001 16861000 22999 OsKitaake07g138200
Deletion Chr11 16844001 16879000 34999 2
Deletion Chr4 16863001 16884000 20999 OsKitaake04g082700
Deletion Chr7 16877001 16960000 82999 2
Deletion Chr6 16902001 17013000 110999 4
Deletion Chr2 17081001 17113000 31999 OsKitaake02g172800
Deletion Chr8 17181001 17252000 70999 4
Deletion Chr7 17189001 17232000 42999
Deletion Chr4 17268001 17300000 31999 OsKitaake04g084700
Deletion Chr2 17402001 17416000 13999 OsKitaake02g175100
Deletion Chr1 17446001 17477000 30999 OsKitaake01g179300
Deletion Chr5 17448001 17468000 19999
Deletion Chr7 17546001 17585000 38999 3
Deletion Chr7 17698001 17718000 19999 OsKitaake07g143800
Deletion Chr3 17718001 17730000 11999
Deletion Chr1 17725001 17779000 53999 4
Deletion Chr6 17734001 17745000 10999
Deletion Chr4 17791001 17803000 11999 OsKitaake04g089100
Deletion Chr8 18077001 18117000 39999 OsKitaake08g134500
Deletion Chr7 18366001 18386000 19999 2
Deletion Chr8 18391001 18453000 61999 5
Deletion Chr3 18450001 18495000 44999 3
Deletion Chr2 18452001 18476000 23999 6
Deletion Chr3 18623001 19081000 457999 30
Deletion Chr1 18631001 18649000 17999 OsKitaake01g186700
Deletion Chr8 18689001 18701000 11999 OsKitaake08g138400
Deletion Chr5 18716001 18736000 19999 OsKitaake05g146000
Deletion Chr1 18725001 18746000 20999 3
Deletion Chr1 18876001 18895000 18999 3
Deletion Chr12 18882001 18971000 88999 6
Deletion Chr11 18898001 18922000 23999 2
Deletion Chr4 18928001 18949000 20999 4
Deletion Chr6 19093001 19167000 73999 9
Deletion Chr10 19206001 19252000 45999 4
Deletion Chr8 19240001 19277000 36999 2
Deletion Chr6 19292001 19321000 28999 OsKitaake06g174000
Deletion Chr1 19295001 19321000 25999 2
Deletion Chr6 19388001 19401000 12999
Deletion Chr8 19435001 19460000 24999 4
Deletion Chr1 19497001 19512000 14999
Deletion Chr8 19671001 19708000 36999 3
Deletion Chr3 19751001 19770000 18999
Deletion Chr5 19828001 19854000 25999 5
Deletion Chr12 19842001 19867000 24999 OsKitaake12g148200
Deletion Chr2 19924001 19963000 38999 3
Deletion Chr1 19944001 19968000 23999
Deletion Chr6 19957001 19984000 26999 2
Deletion Chr1 20019001 20047000 27999
Deletion Chr3 20040046 20040356 310
Deletion Chr2 20204001 20250000 45999 3
Deletion Chr1 20537001 20575000 37999 5
Deletion Chr3 20577001 20592000 14999
Deletion Chr7 20707001 20727000 19999 OsKitaake07g170500
Deletion Chr2 20715001 20744000 28999 5
Deletion Chr2 20801001 20857000 55999 8
Deletion Chr1 20827001 20912000 84999 6
Deletion Chr6 20847001 20881000 33999 3
Deletion Chr1 20969001 20983000 13999 2
Deletion Chr4 21225906 21225931 25
Deletion Chr12 21252001 21277000 24999
Deletion Chr12 21309001 21358000 48999 3
Deletion Chr12 21382001 21391000 8999 OsKitaake12g167800
Deletion Chr12 21412001 21434000 21999
Deletion Chr12 21526001 21550000 23999 OsKitaake12g169100
Deletion Chr2 21620001 21642000 21999
Deletion Chr11 21744001 21765000 20999
Deletion Chr6 21848001 21866000 17999 OsKitaake06g192500
Deletion Chr5 21901001 22009000 107999 13
Deletion Chr8 21929001 21959000 29999 2
Deletion Chr10 21942001 21957000 14999 2
Deletion Chr3 21947001 21959000 11999
Deletion Chr12 21995001 22015000 19999 3
Deletion Chr11 22202001 22252000 49999 3
Deletion Chr4 22231001 22249000 17999 OsKitaake04g129900
Deletion Chr8 22295001 22313000 17999
Deletion Chr9 22421001 22443000 21999 4
Deletion Chr3 22535001 22552000 16999 2
Deletion Chr2 22550001 22577000 26999 4
Deletion Chr12 22857001 22871000 13999 2
Deletion Chr3 23016001 23045000 28999 4
Deletion Chr11 23019001 23076000 56999 3
Deletion Chr5 23050001 23067000 16999 2
Deletion Chr2 23409001 23426000 16999 2
Deletion Chr6 23560001 23581000 20999 OsKitaake06g207806
Deletion Chr8 23717001 23741000 23999
Deletion Chr4 23765001 23779000 13999 OsKitaake04g150400
Deletion Chr11 23974001 23989000 14999 2
Deletion Chr7 24015001 24035000 19999 OsKitaake07g212300
Deletion Chr12 24110001 24141000 30999 3
Deletion Chr6 24236001 24272000 35999 2
Deletion Chr11 24350001 24373000 22999 2
Deletion Chr6 24624001 24636000 11999 OsKitaake06g218300
Deletion Chr5 24625001 24645000 19999 2
Deletion Chr3 24641001 24662000 20999 OsKitaake03g263500
Deletion Chr3 24773001 24805000 31999
Deletion Chr8 24864001 24877000 12999
Deletion Chr6 24987001 24997000 9999
Deletion Chr6 25037001 25109000 71999 10
Deletion Chr3 25184001 25200000 15999
Deletion Chr8 25237001 25266000 28999 5
Deletion Chr5 25336001 25363000 26999 4
Deletion Chr11 25352001 25393000 40999 9
Deletion Chr11 25412001 25470000 57999 8
Deletion Chr2 25524001 25583000 58999 8
Deletion Chr11 25564001 25635000 70999 9
Deletion Chr8 25571001 25596000 24999 6
Deletion Chr2 25607001 25622000 14999 5
Deletion Chr2 25826001 25842000 15999
Deletion Chr5 26342001 26356000 13999 3
Deletion Chr3 26381001 26393000 11999 OsKitaake03g275200
Deletion Chr7 26600001 26617000 16999 2
Deletion Chr5 26606001 26625000 18999 6
Deletion Chr3 26636001 26660000 23999
Deletion Chr6 26649001 26664000 14999
Deletion Chr8 26810001 26826000 15999 2
Deletion Chr7 26841001 26869000 27999 2
Deletion Chr4 26953001 26998000 44999 8
Deletion Chr1 26989001 27024000 34999 6
Deletion Chr11 27060001 27095000 34999 7
Deletion Chr5 27086001 27124000 37999 12
Deletion Chr11 27284001 27305000 20999 OsKitaake11g223300
Deletion Chr8 27334001 27367000 32999 2
Deletion Chr6 27392001 27403000 10999 OsKitaake06g247300
Deletion Chr2 27628001 27657000 28999 OsKitaake02g277600
Deletion Chr4 28069001 28079000 9999
Deletion Chr2 28189001 28227000 37999 3
Deletion Chr11 28341001 28387000 45999
Deletion Chr7 28375001 28388000 12999 6
Deletion Chr2 28438001 28447000 8999
Deletion Chr6 28439001 28459000 19999 3
Deletion Chr5 28851001 28872000 20999 OsKitaake05g271400
Deletion Chr1 28876001 28894000 17999 5
Deletion Chr4 28884001 28906000 21999 3
Deletion Chr5 28918806 28918807 1
Deletion Chr7 29082001 29092000 9999 OsKitaake07g277600
Deletion Chr11 29320001 29356000 35999
Deletion Chr5 29465001 29493000 27999
Deletion Chr4 29518001 29549000 30999 OsKitaake04g226500
Deletion Chr2 29709001 29740000 30999 7
Deletion Chr2 29806001 29837000 30999 3
Deletion Chr3 29810001 29834000 23999 3
Deletion Chr2 30006001 30023000 16999 OsKitaake02g304600
Deletion Chr4 30132001 30149000 16999 2
Deletion Chr3 30354001 30380000 25999 3
Deletion Chr4 30643989 30643990 1
Deletion Chr4 30713001 30728000 14999 OsKitaake04g237000
Deletion Chr4 31356001 31371000 14999 3
Deletion Chr3 31959001 31974000 14999 6
Deletion Chr2 32097001 32122000 24999 OsKitaake02g328000
Deletion Chr3 32131001 32141000 9999 OsKitaake03g340600
Deletion Chr1 32887001 32917000 29999 7
Deletion Chr1 33045679 33045681 2
Deletion Chr4 33098001 33123000 24999 3
Deletion Chr1 33293001 33340000 46999 10
Deletion Chr1 33449001 33470000 20999 OsKitaake01g342500
Deletion Chr4 33480001 33502000 21999 4
Deletion Chr1 33678001 33701000 22999 7
Deletion Chr2 33700001 33708000 7999 OsKitaake02g348500
Deletion Chr4 33927001 33940000 12999 4
Deletion Chr4 34138001 34167000 28999 OsKitaake04g284927
Deletion Chr2 34245001 34268000 22999 2
Deletion Chr2 34336001 34354000 17999 3
Deletion Chr1 35069001 35110000 40999 2
Deletion Chr3 35708001 35725000 16999 2
Deletion Chr4 36007001 36019000 11999 4
Deletion Chr2 36731001 36742000 10999 5
Deletion Chr1 36853001 36880000 26999 7
Deletion Chr1 37752001 37784000 31999 5
Deletion Chr1 38102001 38143000 40999 6
Deletion Chr1 38797001 38806000 8999 OsKitaake01g415600
Deletion Chr1 41389001 41413000 23999 2
Deletion Chr1 42197001 42225000 27999 6
Deletion Chr1 42293001 42343000 49999 4
Deletion Chr1 43163001 43184000 20999 2
Deletion Chr1 43283001 43302000 18999 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28424528 28424530 1
Insertion Chr8 11655385 11655388 2
Insertion Chr5 30240668 30240670 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5103318 Chr7 1904669 OsKitaake07g025800
Translocation Chr8 23115471 Chr4 6635114 OsKitaake04g033651

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8888984	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	37488797	A-G	Hetero	INTERGENIC
SBS	Chr1	38908414	G-T	Homo	INTERGENIC
SBS	Chr1	40664582	G-A	Homo	INTRON
SBS	Chr1	43739817	G-A	Hetero	INTERGENIC
SBS	Chr2	2846156	C-T	Homo	INTERGENIC
SBS	Chr2	3671755	C-T	Homo	INTERGENIC
SBS	Chr2	14468648	C-G	Hetero	INTERGENIC
SBS	Chr2	29425489	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g296200
SBS	Chr2	30373359	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g309400
SBS	Chr3	12170985	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g164800
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Hetero	INTERGENIC
SBS	Chr4	4623833	A-G	Hetero	INTERGENIC
SBS	Chr4	8213873	G-T	Hetero	INTERGENIC
SBS	Chr4	18153839	A-T	Hetero	START_GAINED
SBS	Chr4	24453997	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g159200
SBS	Chr4	35403908	G-A	Homo	INTERGENIC
SBS	Chr5	14237542	T-C	Homo	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr9	1020156	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	7307618	G-A	Hetero	INTERGENIC
SBS	Chr9	10874281	G-C	Hetero	INTERGENIC
SBS	Chr10	7562725	C-T	Hetero	INTERGENIC
SBS	Chr10	10539407	C-T	Hetero	INTERGENIC
SBS	Chr10	11670149	G-A	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Homo	INTERGENIC
SBS	Chr11	15605980	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr11	18913694	G-A	Homo	INTERGENIC
SBS	Chr11	20170841	C-T	Homo	INTERGENIC
SBS	Chr12	203868	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	561001	575000	13999
Deletion	Chr9	643001	659000	15999	OsKitaake09g004500
Deletion	Chr9	717001	733000	15999
Deletion	Chr4	803001	817000	13999	2
Deletion	Chr8	912001	926000	13999	2
Deletion	Chr9	1033001	1053000	19999
Deletion	Chr11	1154001	1169000	14999
Deletion	Chr12	1184001	1199000	14999
Deletion	Chr8	1307001	1328000	20999	2
Deletion	Chr9	1454778	1454780	2
Deletion	Chr4	1632001	1643000	10999
Deletion	Chr2	1655001	1667000	11999	3
Deletion	Chr8	1743001	1758000	14999
Deletion	Chr4	2041001	2105000	63999	4
Deletion	Chr8	2249001	2262000	12999	OsKitaake08g026800
Deletion	Chr12	2779001	2796000	16999	5
Deletion	Chr3	2982001	2998000	15999	2
Deletion	Chr11	3030001	3051000	20999	2
Deletion	Chr9	3118001	3145000	26999
Deletion	Chr12	3218001	3241000	22999	2
Deletion	Chr6	3265001	3315000	49999	5
Deletion	Chr1	3294001	3308000	13999	2
Deletion	Chr9	3332001	3348000	15999
Deletion	Chr7	3337001	3399000	61999	7
Deletion	Chr12	3460001	3477000	16999	OsKitaake12g048900
Deletion	Chr4	3484001	3542000	57999	2
Deletion	Chr11	3533001	3566000	32999	4
Deletion	Chr12	3550001	3570000	19999	OsKitaake12g049700
Deletion	Chr11	3613001	3662000	48999	13
Deletion	Chr9	3914001	3947000	32999	OsKitaake09g020900
Deletion	Chr2	3961001	3982000	20999
Deletion	Chr3	3995001	4026000	30999	4
Deletion	Chr6	4119001	4139000	19999	OsKitaake06g057700
Deletion	Chr7	4159001	4185000	25999	3
Deletion	Chr12	4222001	4240000	17999	OsKitaake12g057700
Deletion	Chr4	4262001	4305000	42999	2
Deletion	Chr12	4388001	4429000	40999	2
Deletion	Chr10	4443001	4478000	34999	5
Deletion	Chr11	4528001	4552000	23999	OsKitaake11g060300
Deletion	Chr7	4533001	4552000	18999	3
Deletion	Chr8	4567001	4587000	19999	4
Deletion	Chr7	4763001	4826000	62999	6
Deletion	Chr12	4791001	4875000	83999	8
Deletion	Chr5	4793001	4813000	19999
Deletion	Chr4	4858001	4934000	75999	3
Deletion	Chr11	4880001	4899000	18999	2
Deletion	Chr10	4936001	4981000	44999	2
Deletion	Chr7	4958001	5013000	54999	3
Deletion	Chr3	5065001	5083000	17999	4
Deletion	Chr3	5104001	5116000	11999	2
Deletion	Chr11	5113001	5156000	42999	6
Deletion	Chr8	5140001	5158000	17999	OsKitaake08g056000
Deletion	Chr9	5260001	5289000	28999
Deletion	Chr11	5287001	5309000	21999	4
Deletion	Chr8	5336001	5382000	45999	3
Deletion	Chr9	5380001	5400000	19999	2
Deletion	Chr11	5669001	5677000	7999	3
Deletion	Chr4	5670001	5700000	29999	OsKitaake04g027900
Deletion	Chr11	5773001	5796000	22999	3
Deletion	Chr4	5874001	5903000	28999	3
Deletion	Chr5	5884001	5917000	32999
Deletion	Chr8	5959001	5974000	14999	OsKitaake08g064600
Deletion	Chr5	5984001	6021000	36999	OsKitaake05g180600
Deletion	Chr10	6045001	6062000	16999	4
Deletion	Chr4	6092001	6141000	48999	2
Deletion	Chr4	6196001	6220000	23999
Deletion	Chr7	6406813	6406814	1
Deletion	Chr3	6452001	6465000	12999	5
Deletion	Chr1	6497557	6497565	8
Deletion	Chr2	6655001	6668000	12999	4
Deletion	Chr10	6724001	6754000	29999	3
Deletion	Chr7	6860001	6885000	24999
Deletion	Chr7	6979001	6992000	12999	9
Deletion	Chr5	6989001	7029000	39999	4
Deletion	Chr1	7040001	7058000	17999	2
Deletion	Chr10	7053001	7072000	18999
Deletion	Chr1	7247001	7269000	21999	3
Deletion	Chr4	7271001	7291000	19999
Deletion	Chr8	7279001	7305000	25999
Deletion	Chr11	7365001	7378000	12999
Deletion	Chr8	7581001	7628000	46999
Deletion	Chr11	7582001	7611000	28999	OsKitaake11g085300
Deletion	Chr12	7641001	7667000	25999	2
Deletion	Chr10	7717001	7826000	108999	4
Deletion	Chr8	7845001	7945000	99999	5
Deletion	Chr4	7847001	7865000	17999
Deletion	Chr3	8015001	8046000	30999	3
Deletion	Chr1	8072001	8089000	16999	OsKitaake01g101200
Deletion	Chr5	8219001	8244000	24999
Deletion	Chr6	8250001	8284000	33999	4
Deletion	Chr4	8332001	8362000	29999
Deletion	Chr3	8451001	8472000	20999	OsKitaake03g116100
Deletion	Chr8	8669001	8693000	23999	OsKitaake08g079900
Deletion	Chr11	8711001	8783000	71999	7
Deletion	Chr9	8727001	8753000	25999
Deletion	Chr12	8745001	8772000	26999	OsKitaake12g088200
Deletion	Chr6	8893001	8914000	20999	OsKitaake06g107200
Deletion	Chr8	9254001	9276000	21999	2
Deletion	Chr7	9295001	9317000	21999	OsKitaake07g095900
Deletion	Chr5	9376001	9408000	31999	OsKitaake05g087100
Deletion	Chr12	9473001	9497000	23999	3
Deletion	Chr4	9523001	9562000	38999	2
Deletion	Chr11	9550001	9644000	93999	4
Deletion	Chr10	9554001	9618000	63999	4
Deletion	Chr5	9579001	9588000	8999
Deletion	Chr7	9583001	9615000	31999
Deletion	Chr8	9650001	9677000	26999	OsKitaake08g090800
Deletion	Chr8	9762001	9810000	47999
Deletion	Chr9	9819001	9857000	37999	2
Deletion	Chr11	9822001	9869000	46999	OsKitaake11g101000
Deletion	Chr8	9835001	9869000	33999	OsKitaake08g091700
Deletion	Chr5	9863001	9887000	23999	OsKitaake05g089500
Deletion	Chr12	9941001	9953000	11999
Deletion	Chr11	9977001	9992000	14999	OsKitaake11g101701
Deletion	Chr8	10068001	10094000	25999
Deletion	Chr9	10113001	10128000	14999
Deletion	Chr5	10120001	10157000	36999	OsKitaake05g089901
Deletion	Chr4	10198001	10215000	16999
Deletion	Chr9	10200001	10239000	38999	4
Deletion	Chr8	10258001	10271000	12999
Deletion	Chr11	10307001	10333000	25999
Deletion	Chr8	10387001	10414000	26999	OsKitaake08g093500
Deletion	Chr1	10404001	10428000	23999
Deletion	Chr9	10538001	10551000	12999	OsKitaake09g065900
Deletion	Chr9	10594001	10625000	30999	2
Deletion	Chr8	10711001	10766000	54999	5
Deletion	Chr12	10802001	10819000	16999	OsKitaake12g100300
Deletion	Chr12	10852001	10869000	16999	3
Deletion	Chr4	10855001	10911000	55999
Deletion	Chr6	10862001	10892000	29999	OsKitaake06g121250
Deletion	Chr6	10972001	10985000	12999	OsKitaake06g122200
Deletion	Chr11	10987001	11015000	27999	OsKitaake11g106300
Deletion	Chr5	10992001	11012000	19999
Deletion	Chr4	11057001	11076000	18999
Deletion	Chr1	11177001	11208000	30999	OsKitaake01g137600
Deletion	Chr4	11180001	11200000	19999
Deletion	Chr4	11273001	11301000	27999
Deletion	Chr8	11275001	11305000	29999
Deletion	Chr1	11309001	11319000	9999
Deletion	Chr4	11331001	11357000	25999
Deletion	Chr2	11334001	11375000	40999	OsKitaake02g131900
Deletion	Chr12	11377001	11400000	22999
Deletion	Chr5	11381001	11428000	46999	7
Deletion	Chr4	11545001	11560000	14999	2
Deletion	Chr11	11633001	11655000	21999
Deletion	Chr12	11658160	11658314	154
Deletion	Chr5	11668001	11682000	13999	OsKitaake05g095900
Deletion	Chr3	11671001	11704000	32999	4
Deletion	Chr1	11692001	11718000	25999	OsKitaake01g141100
Deletion	Chr11	11794001	11858000	63999	OsKitaake11g110500
Deletion	Chr1	11893001	11915000	21999	2
Deletion	Chr2	11930001	11950000	19999
Deletion	Chr5	11934001	12040000	105999	4
Deletion	Chr10	11966001	11990000	23999	4
Deletion	Chr8	12040001	12070000	29999
Deletion	Chr1	12168001	12175000	6999
Deletion	Chr5	12203001	12230000	26999
Deletion	Chr4	12204001	12224000	19999	OsKitaake04g059200
Deletion	Chr5	12249001	12282000	32999
Deletion	Chr3	12292001	12310000	17999
Deletion	Chr8	12343001	12358000	14999	OsKitaake08g106500
Deletion	Chr6	12374001	12428000	53999	2
Deletion	Chr10	12412001	12432000	19999	3
Deletion	Chr6	12463001	12514000	50999	3
Deletion	Chr6	12539001	12573000	33999	4
Deletion	Chr5	12545001	12554000	8999
Deletion	Chr1	12651001	12670000	18999
Deletion	Chr11	12781001	12802000	20999
Deletion	Chr6	12811001	12821000	9999	OsKitaake06g136633
Deletion	Chr11	12826001	12847000	20999
Deletion	Chr7	12846001	12874000	27999	2
Deletion	Chr8	12854001	12893000	38999
Deletion	Chr9	12976001	13020000	43999	OsKitaake09g086300
Deletion	Chr3	12987001	13023000	35999	6
Deletion	Chr11	12995001	13033000	37999	OsKitaake11g114400
Deletion	Chr4	13019001	13042000	22999
Deletion	Chr5	13039001	13077000	37999	6
Deletion	Chr1	13105001	13120000	14999	4
Deletion	Chr8	13193001	13276000	82999	OsKitaake08g110140
Deletion	Chr5	13267001	13279000	11999
Deletion	Chr12	13301001	13316000	14999
Deletion	Chr6	13311001	13337000	25999	OsKitaake06g140800
Deletion	Chr1	13426001	13440000	13999	OsKitaake01g156400
Deletion	Chr5	13487001	13516000	28999
Deletion	Chr6	13500001	13522000	21999
Deletion	Chr1	13503092	13503093	1
Deletion	Chr11	13561001	13603000	41999	2
Deletion	Chr5	13727001	13763000	35999	4
Deletion	Chr7	13761001	13775000	13999
Deletion	Chr5	13779001	13802000	22999	3
Deletion	Chr12	13804001	13837000	32999	4
Deletion	Chr7	13811001	13833000	21999
Deletion	Chr2	13825345	13825655	310
Deletion	Chr2	13837961	13837963	2
Deletion	Chr6	13886001	13903000	16999	2
Deletion	Chr11	13921001	13938000	16999	OsKitaake11g117000
Deletion	Chr6	13948001	13977000	28999	3
Deletion	Chr2	13974001	13999000	24999
Deletion	Chr11	13985001	14006000	20999
Deletion	Chr8	13991001	14034000	42999	OsKitaake08g111050
Deletion	Chr5	14009001	14028000	18999	OsKitaake05g108300
Deletion	Chr4	14010001	14040000	29999	OsKitaake04g067250
Deletion	Chr4	14057001	14140000	82999	4
Deletion	Chr7	14169001	14204000	34999	2
Deletion	Chr5	14442001	14464000	21999	3
Deletion	Chr7	14447001	14475000	27999
Deletion	Chr5	14474001	14494000	19999	OsKitaake05g110400
Deletion	Chr5	14530001	14569000	38999	3
Deletion	Chr6	14538001	14606000	67999	4
Deletion	Chr6	14695001	14716000	20999	OsKitaake06g149300
Deletion	Chr8	14711001	14738000	26999
Deletion	Chr5	14807001	14820000	12999	3
Deletion	Chr2	14824001	14927000	102999	OsKitaake02g157500
Deletion	Chr4	14869001	14910000	40999	2
Deletion	Chr12	15024001	15074000	49999	OsKitaake12g118500
Deletion	Chr12	15127001	15140000	12999
Deletion	Chr5	15175001	15255000	79999	10
Deletion	Chr4	15208001	15220000	11999
Deletion	Chr4	15330001	15351000	20999	2
Deletion	Chr11	15391001	15408000	16999
Deletion	Chr6	15453001	15465000	11999	OsKitaake06g152400
Deletion	Chr3	15547001	15562000	14999
Deletion	Chr5	15556001	15577000	20999	4
Deletion	Chr1	15647001	15672000	24999	3
Deletion	Chr11	15658001	15688000	29999	2
Deletion	Chr6	15677001	15693000	15999	OsKitaake06g152900
Deletion	Chr11	15795001	15827000	31999	3
Deletion	Chr11	15839001	15897000	57999	3
Deletion	Chr7	15888001	15907000	18999
Deletion	Chr8	16010001	16081000	70999	6
Deletion	Chr3	16013001	16022000	8999	5
Deletion	Chr6	16042001	16074000	31999	3
Deletion	Chr5	16095001	16114000	18999	OsKitaake05g123500
Deletion	Chr6	16104001	16125000	20999	OsKitaake06g154900
Deletion	Chr12	16132001	16163000	30999
Deletion	Chr10	16240633	16240634	1
Deletion	Chr1	16241001	16321000	79999	9
Deletion	Chr4	16256001	16301000	44999
Deletion	Chr2	16307001	16353000	45999	2
Deletion	Chr6	16452001	16463000	10999
Deletion	Chr12	16575001	16587000	11999	OsKitaake12g124900
Deletion	Chr4	16631001	16671000	39999	2
Deletion	Chr1	16649001	16681000	31999	2
Deletion	Chr5	16666001	16696000	29999	3
Deletion	Chr3	16733001	16750000	16999
Deletion	Chr7	16838001	16861000	22999	OsKitaake07g138200
Deletion	Chr11	16844001	16879000	34999	2
Deletion	Chr4	16863001	16884000	20999	OsKitaake04g082700
Deletion	Chr7	16877001	16960000	82999	2
Deletion	Chr6	16902001	17013000	110999	4
Deletion	Chr2	17081001	17113000	31999	OsKitaake02g172800
Deletion	Chr8	17181001	17252000	70999	4
Deletion	Chr7	17189001	17232000	42999
Deletion	Chr4	17268001	17300000	31999	OsKitaake04g084700
Deletion	Chr2	17402001	17416000	13999	OsKitaake02g175100
Deletion	Chr1	17446001	17477000	30999	OsKitaake01g179300
Deletion	Chr5	17448001	17468000	19999
Deletion	Chr7	17546001	17585000	38999	3
Deletion	Chr7	17698001	17718000	19999	OsKitaake07g143800
Deletion	Chr3	17718001	17730000	11999
Deletion	Chr1	17725001	17779000	53999	4
Deletion	Chr6	17734001	17745000	10999
Deletion	Chr4	17791001	17803000	11999	OsKitaake04g089100
Deletion	Chr8	18077001	18117000	39999	OsKitaake08g134500
Deletion	Chr7	18366001	18386000	19999	2
Deletion	Chr8	18391001	18453000	61999	5
Deletion	Chr3	18450001	18495000	44999	3
Deletion	Chr2	18452001	18476000	23999	6
Deletion	Chr3	18623001	19081000	457999	30
Deletion	Chr1	18631001	18649000	17999	OsKitaake01g186700
Deletion	Chr8	18689001	18701000	11999	OsKitaake08g138400
Deletion	Chr5	18716001	18736000	19999	OsKitaake05g146000
Deletion	Chr1	18725001	18746000	20999	3
Deletion	Chr1	18876001	18895000	18999	3
Deletion	Chr12	18882001	18971000	88999	6
Deletion	Chr11	18898001	18922000	23999	2
Deletion	Chr4	18928001	18949000	20999	4
Deletion	Chr6	19093001	19167000	73999	9
Deletion	Chr10	19206001	19252000	45999	4
Deletion	Chr8	19240001	19277000	36999	2
Deletion	Chr6	19292001	19321000	28999	OsKitaake06g174000
Deletion	Chr1	19295001	19321000	25999	2
Deletion	Chr6	19388001	19401000	12999
Deletion	Chr8	19435001	19460000	24999	4
Deletion	Chr1	19497001	19512000	14999
Deletion	Chr8	19671001	19708000	36999	3
Deletion	Chr3	19751001	19770000	18999
Deletion	Chr5	19828001	19854000	25999	5
Deletion	Chr12	19842001	19867000	24999	OsKitaake12g148200
Deletion	Chr2	19924001	19963000	38999	3
Deletion	Chr1	19944001	19968000	23999
Deletion	Chr6	19957001	19984000	26999	2
Deletion	Chr1	20019001	20047000	27999
Deletion	Chr3	20040046	20040356	310
Deletion	Chr2	20204001	20250000	45999	3
Deletion	Chr1	20537001	20575000	37999	5
Deletion	Chr3	20577001	20592000	14999
Deletion	Chr7	20707001	20727000	19999	OsKitaake07g170500
Deletion	Chr2	20715001	20744000	28999	5
Deletion	Chr2	20801001	20857000	55999	8
Deletion	Chr1	20827001	20912000	84999	6
Deletion	Chr6	20847001	20881000	33999	3
Deletion	Chr1	20969001	20983000	13999	2
Deletion	Chr4	21225906	21225931	25
Deletion	Chr12	21252001	21277000	24999
Deletion	Chr12	21309001	21358000	48999	3
Deletion	Chr12	21382001	21391000	8999	OsKitaake12g167800
Deletion	Chr12	21412001	21434000	21999
Deletion	Chr12	21526001	21550000	23999	OsKitaake12g169100
Deletion	Chr2	21620001	21642000	21999
Deletion	Chr11	21744001	21765000	20999
Deletion	Chr6	21848001	21866000	17999	OsKitaake06g192500
Deletion	Chr5	21901001	22009000	107999	13
Deletion	Chr8	21929001	21959000	29999	2
Deletion	Chr10	21942001	21957000	14999	2
Deletion	Chr3	21947001	21959000	11999
Deletion	Chr12	21995001	22015000	19999	3
Deletion	Chr11	22202001	22252000	49999	3
Deletion	Chr4	22231001	22249000	17999	OsKitaake04g129900
Deletion	Chr8	22295001	22313000	17999
Deletion	Chr9	22421001	22443000	21999	4
Deletion	Chr3	22535001	22552000	16999	2
Deletion	Chr2	22550001	22577000	26999	4
Deletion	Chr12	22857001	22871000	13999	2
Deletion	Chr3	23016001	23045000	28999	4
Deletion	Chr11	23019001	23076000	56999	3
Deletion	Chr5	23050001	23067000	16999	2
Deletion	Chr2	23409001	23426000	16999	2
Deletion	Chr6	23560001	23581000	20999	OsKitaake06g207806
Deletion	Chr8	23717001	23741000	23999
Deletion	Chr4	23765001	23779000	13999	OsKitaake04g150400
Deletion	Chr11	23974001	23989000	14999	2
Deletion	Chr7	24015001	24035000	19999	OsKitaake07g212300
Deletion	Chr12	24110001	24141000	30999	3
Deletion	Chr6	24236001	24272000	35999	2
Deletion	Chr11	24350001	24373000	22999	2
Deletion	Chr6	24624001	24636000	11999	OsKitaake06g218300
Deletion	Chr5	24625001	24645000	19999	2
Deletion	Chr3	24641001	24662000	20999	OsKitaake03g263500
Deletion	Chr3	24773001	24805000	31999
Deletion	Chr8	24864001	24877000	12999
Deletion	Chr6	24987001	24997000	9999
Deletion	Chr6	25037001	25109000	71999	10
Deletion	Chr3	25184001	25200000	15999
Deletion	Chr8	25237001	25266000	28999	5
Deletion	Chr5	25336001	25363000	26999	4
Deletion	Chr11	25352001	25393000	40999	9
Deletion	Chr11	25412001	25470000	57999	8
Deletion	Chr2	25524001	25583000	58999	8
Deletion	Chr11	25564001	25635000	70999	9
Deletion	Chr8	25571001	25596000	24999	6
Deletion	Chr2	25607001	25622000	14999	5
Deletion	Chr2	25826001	25842000	15999
Deletion	Chr5	26342001	26356000	13999	3
Deletion	Chr3	26381001	26393000	11999	OsKitaake03g275200
Deletion	Chr7	26600001	26617000	16999	2
Deletion	Chr5	26606001	26625000	18999	6
Deletion	Chr3	26636001	26660000	23999
Deletion	Chr6	26649001	26664000	14999
Deletion	Chr8	26810001	26826000	15999	2
Deletion	Chr7	26841001	26869000	27999	2
Deletion	Chr4	26953001	26998000	44999	8
Deletion	Chr1	26989001	27024000	34999	6
Deletion	Chr11	27060001	27095000	34999	7
Deletion	Chr5	27086001	27124000	37999	12
Deletion	Chr11	27284001	27305000	20999	OsKitaake11g223300
Deletion	Chr8	27334001	27367000	32999	2
Deletion	Chr6	27392001	27403000	10999	OsKitaake06g247300
Deletion	Chr2	27628001	27657000	28999	OsKitaake02g277600
Deletion	Chr4	28069001	28079000	9999
Deletion	Chr2	28189001	28227000	37999	3
Deletion	Chr11	28341001	28387000	45999
Deletion	Chr7	28375001	28388000	12999	6
Deletion	Chr2	28438001	28447000	8999
Deletion	Chr6	28439001	28459000	19999	3
Deletion	Chr5	28851001	28872000	20999	OsKitaake05g271400
Deletion	Chr1	28876001	28894000	17999	5
Deletion	Chr4	28884001	28906000	21999	3
Deletion	Chr5	28918806	28918807	1
Deletion	Chr7	29082001	29092000	9999	OsKitaake07g277600
Deletion	Chr11	29320001	29356000	35999
Deletion	Chr5	29465001	29493000	27999
Deletion	Chr4	29518001	29549000	30999	OsKitaake04g226500
Deletion	Chr2	29709001	29740000	30999	7
Deletion	Chr2	29806001	29837000	30999	3
Deletion	Chr3	29810001	29834000	23999	3
Deletion	Chr2	30006001	30023000	16999	OsKitaake02g304600
Deletion	Chr4	30132001	30149000	16999	2
Deletion	Chr3	30354001	30380000	25999	3
Deletion	Chr4	30643989	30643990	1
Deletion	Chr4	30713001	30728000	14999	OsKitaake04g237000
Deletion	Chr4	31356001	31371000	14999	3
Deletion	Chr3	31959001	31974000	14999	6
Deletion	Chr2	32097001	32122000	24999	OsKitaake02g328000
Deletion	Chr3	32131001	32141000	9999	OsKitaake03g340600
Deletion	Chr1	32887001	32917000	29999	7
Deletion	Chr1	33045679	33045681	2
Deletion	Chr4	33098001	33123000	24999	3
Deletion	Chr1	33293001	33340000	46999	10
Deletion	Chr1	33449001	33470000	20999	OsKitaake01g342500
Deletion	Chr4	33480001	33502000	21999	4
Deletion	Chr1	33678001	33701000	22999	7
Deletion	Chr2	33700001	33708000	7999	OsKitaake02g348500
Deletion	Chr4	33927001	33940000	12999	4
Deletion	Chr4	34138001	34167000	28999	OsKitaake04g284927
Deletion	Chr2	34245001	34268000	22999	2
Deletion	Chr2	34336001	34354000	17999	3
Deletion	Chr1	35069001	35110000	40999	2
Deletion	Chr3	35708001	35725000	16999	2
Deletion	Chr4	36007001	36019000	11999	4
Deletion	Chr2	36731001	36742000	10999	5
Deletion	Chr1	36853001	36880000	26999	7
Deletion	Chr1	37752001	37784000	31999	5
Deletion	Chr1	38102001	38143000	40999	6
Deletion	Chr1	38797001	38806000	8999	OsKitaake01g415600
Deletion	Chr1	41389001	41413000	23999	2
Deletion	Chr1	42197001	42225000	27999	6
Deletion	Chr1	42293001	42343000	49999	4
Deletion	Chr1	43163001	43184000	20999	2
Deletion	Chr1	43283001	43302000	18999	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5103318	Chr7	1904669	OsKitaake07g025800
Translocation	Chr8	23115471	Chr4	6635114	OsKitaake04g033651

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes