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Mutant Information

Mutant Name	FN3094-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3094-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1901047 A-G Homo INTRON
SBS Chr1 24529070 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g236300
SBS Chr1 24529072 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g236300
SBS Chr1 36790548 G-A Hetero INTERGENIC
SBS Chr2 1639289 C-G Homo INTERGENIC
SBS Chr2 16342749 G-A Homo UTR_5_PRIME
SBS Chr2 16342776 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g167800
SBS Chr2 16342782 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g167800
SBS Chr2 30457716 T-A Homo INTERGENIC
SBS Chr3 399083 C-G Hetero INTERGENIC
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 34440435 C-T Homo SYNONYMOUS_CODING
SBS Chr5 837176 C-A Hetero INTERGENIC
SBS Chr5 4544415 A-G Hetero INTERGENIC
SBS Chr5 4544428 A-T Hetero INTERGENIC
SBS Chr5 5064088 T-C Hetero INTERGENIC
SBS Chr5 5701281 C-T Hetero INTERGENIC
SBS Chr5 16352540 T-A Homo INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 7712897 C-A Homo INTERGENIC
SBS Chr7 4833940 C-T Hetero INTERGENIC
SBS Chr7 9185630 G-A Homo INTERGENIC
SBS Chr7 9263403 C-T Homo INTERGENIC
SBS Chr7 11890431 T-G Homo INTRON
SBS Chr7 27005228 G-T Hetero INTERGENIC
SBS Chr7 27815653 C-T Hetero INTERGENIC
SBS Chr7 27815654 C-T Hetero INTERGENIC
SBS Chr8 1523321 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 24704086 G-A Homo SYNONYMOUS_CODING
SBS Chr9 6580364 G-T Hetero INTERGENIC
SBS Chr9 10380490 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g064600
SBS Chr9 13683730 C-T Hetero INTERGENIC
SBS Chr10 10962299 C-T Hetero INTERGENIC
SBS Chr10 11235798 A-G Homo INTERGENIC
SBS Chr10 13756851 C-A Homo INTERGENIC
SBS Chr10 14599562 C-T Hetero INTERGENIC
SBS Chr11 22052559 C-T Hetero INTERGENIC
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr12 2888466 C-T Homo INTERGENIC
SBS Chr12 12777601 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 18973618 C-T Hetero INTERGENIC

Deletions: 511

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 29606 29625 19
Deletion Chr9 559001 580000 20999
Deletion Chr9 640001 659000 18999 OsKitaake09g004500
Deletion Chr12 804001 825000 20999 2
Deletion Chr7 843001 862000 18999 2
Deletion Chr11 966001 989000 22999 4
Deletion Chr3 994001 1020000 25999 5
Deletion Chr9 1028001 1069000 40999 OsKitaake09g006400
Deletion Chr11 1151001 1176000 24999 2
Deletion Chr9 1153001 1167000 13999 OsKitaake09g006900
Deletion Chr12 1173001 1203000 29999 OsKitaake12g017200
Deletion Chr8 1301001 1327000 25999 2
Deletion Chr9 1343001 1364000 20999
Deletion Chr2 1371001 1402000 30999 5
Deletion Chr4 1438001 1452000 13999 OsKitaake04g010500
Deletion Chr9 1605001 1671000 65999 OsKitaake09g009200
Deletion Chr3 1961001 1987000 25999 8
Deletion Chr4 2036001 2105000 68999 5
Deletion Chr9 2184001 2202000 17999 OsKitaake09g011400
Deletion Chr8 2250001 2265000 14999 OsKitaake08g026800
Deletion Chr10 2297001 2341000 43999 7
Deletion Chr2 2486001 2521000 34999 2
Deletion Chr6 2789001 2807000 17999 2
Deletion Chr10 2797001 2820000 22999 4
Deletion Chr3 2834001 2855000 20999 2
Deletion Chr2 2949001 2975000 25999 2
Deletion Chr3 2987001 2998000 10999 OsKitaake03g042200
Deletion Chr7 3101001 3133000 31999 OsKitaake07g038800
Deletion Chr5 3208001 3227000 18999 OsKitaake05g038400
Deletion Chr6 3260001 3310000 49999 6
Deletion Chr7 3329001 3405000 75999 10
Deletion Chr5 3344001 3370000 25999 3
Deletion Chr2 3386001 3406000 19999 4
Deletion Chr4 3482001 3569000 86999 2
Deletion Chr10 3488001 3518000 29999 OsKitaake10g026400
Deletion Chr11 3534001 3569000 34999 4
Deletion Chr11 3611001 3662000 50999 13
Deletion Chr10 3775001 3806000 30999 2
Deletion Chr10 3818001 3859000 40999 2
Deletion Chr1 3839001 3868000 28999
Deletion Chr9 3904001 3947000 42999 OsKitaake09g020900
Deletion Chr11 3905001 3945000 39999 5
Deletion Chr2 3967001 3990000 22999 OsKitaake02g056720
Deletion Chr10 4152001 4238000 85999 5
Deletion Chr7 4156001 4180000 23999 3
Deletion Chr12 4218001 4245000 26999 OsKitaake12g057700
Deletion Chr9 4220001 4263000 42999 OsKitaake09g023100
Deletion Chr4 4264001 4300000 35999 2
Deletion Chr6 4318001 4335000 16999 2
Deletion Chr12 4382001 4426000 43999 2
Deletion Chr10 4449001 4483000 33999 2
Deletion Chr7 4454001 4466000 11999 OsKitaake07g055900
Deletion Chr11 4531001 4557000 25999 OsKitaake11g060300
Deletion Chr8 4571001 4584000 12999 4
Deletion Chr6 4598001 4620000 21999 2
Deletion Chr7 4766001 4826000 59999 6
Deletion Chr12 4784001 4873000 88999 8
Deletion Chr10 4827001 4846000 18999 3
Deletion Chr11 4883001 4906000 22999 2
Deletion Chr10 4930001 4990000 59999 3
Deletion Chr3 5070001 5084000 13999 3
Deletion Chr8 5139001 5160000 20999 OsKitaake08g056000
Deletion Chr12 5226001 5251000 24999 4
Deletion Chr1 5279001 5290000 10999 2
Deletion Chr8 5330001 5378000 47999 3
Deletion Chr5 5355001 5380000 24999
Deletion Chr9 5385001 5398000 12999 OsKitaake09g030900
Deletion Chr5 5452001 5480000 27999 OsKitaake05g059300
Deletion Chr4 5529001 5595000 65999 5
Deletion Chr4 5653001 5733000 79999 2
Deletion Chr11 5662001 5681000 18999 4
Deletion Chr11 5772001 5793000 20999 3
Deletion Chr4 5869001 5896000 26999 3
Deletion Chr5 5889001 5921000 31999
Deletion Chr8 5958001 5980000 21999 OsKitaake08g064600
Deletion Chr5 5990001 6019000 28999 OsKitaake05g180600
Deletion Chr2 6058001 6096000 37999 2
Deletion Chr4 6096001 6139000 42999 OsKitaake04g030600
Deletion Chr9 6139001 6158000 18999 3
Deletion Chr4 6204001 6220000 15999
Deletion Chr11 6303001 6331000 27999 OsKitaake11g075400
Deletion Chr7 6382001 6413000 30999 OsKitaake07g074500
Deletion Chr2 6442001 6463000 20999
Deletion Chr3 6447001 6466000 18999 6
Deletion Chr12 6469001 6499000 29999 3
Deletion Chr4 6529001 6562000 32999 OsKitaake04g033200
Deletion Chr12 6603001 6623000 19999 3
Deletion Chr6 6644001 6655000 10999 OsKitaake06g087000
Deletion Chr4 6731001 6772000 40999 3
Deletion Chr4 6814001 6832000 17999
Deletion Chr7 6858001 6883000 24999
Deletion Chr5 6880001 6912000 31999 3
Deletion Chr1 6896001 6919000 22999 6
Deletion Chr11 6973001 7014000 40999 4
Deletion Chr7 6976001 6989000 12999 6
Deletion Chr5 6993001 7025000 31999 2
Deletion Chr7 7162001 7180000 17999
Deletion Chr1 7246001 7270000 23999 3
Deletion Chr2 7254001 7276000 21999 6
Deletion Chr4 7269001 7286000 16999
Deletion Chr8 7282001 7309000 26999
Deletion Chr7 7325001 7341000 15999
Deletion Chr7 7375001 7428000 52999 4
Deletion Chr10 7426001 7506000 79999 3
Deletion Chr7 7488001 7543000 54999 7
Deletion Chr8 7580001 7629000 48999
Deletion Chr11 7585001 7615000 29999 OsKitaake11g085300
Deletion Chr12 7636001 7668000 31999 2
Deletion Chr3 7669001 7692000 22999 4
Deletion Chr10 7716001 7829000 112999 4
Deletion Chr7 7759001 7829000 69999 5
Deletion Chr9 7799001 7812000 12999
Deletion Chr4 7843001 7866000 22999
Deletion Chr12 7896001 7917000 20999
Deletion Chr3 8014001 8042000 27999 3
Deletion Chr6 8162001 8186000 23999 3
Deletion Chr9 8231001 8345000 113999 8
Deletion Chr8 8250001 8330000 79999 3
Deletion Chr1 8290001 8309000 18999 7
Deletion Chr4 8336001 8355000 18999
Deletion Chr2 8490001 8522000 31999 7
Deletion Chr7 8505001 8530000 24999 2
Deletion Chr7 8589001 8615000 25999 3
Deletion Chr5 8598001 8616000 17999
Deletion Chr2 8632001 8650000 17999 2
Deletion Chr4 8689001 8730000 40999 4
Deletion Chr11 8714001 8781000 66999 7
Deletion Chr12 8747001 8767000 19999 OsKitaake12g088200
Deletion Chr12 8792001 8814000 21999 3
Deletion Chr6 8902001 8916000 13999 OsKitaake06g107200
Deletion Chr3 8906001 8917000 10999 3
Deletion Chr4 8971001 8983000 11999 OsKitaake04g046400
Deletion Chr4 9005001 9021000 15999 OsKitaake04g046500
Deletion Chr4 9042001 9098000 55999
Deletion Chr7 9167001 9181000 13999 2
Deletion Chr7 9190001 9201000 10999
Deletion Chr7 9209001 9237000 27999 OsKitaake07g095400
Deletion Chr1 9216001 9233000 16999 2
Deletion Chr10 9251915 9251926 11
Deletion Chr8 9253001 9272000 18999 2
Deletion Chr10 9258001 9284000 25999
Deletion Chr7 9291001 9313000 21999
Deletion Chr6 9333001 9385000 51999 5
Deletion Chr12 9471001 9497000 25999 3
Deletion Chr6 9502001 9512000 9999 OsKitaake06g112300
Deletion Chr4 9524001 9563000 38999 2
Deletion Chr7 9535001 9558000 22999 OsKitaake07g096800
Deletion Chr8 9548001 9568000 19999
Deletion Chr5 9556001 9615000 58999 6
Deletion Chr7 9582001 9611000 28999
Deletion Chr4 9637001 9661000 23999
Deletion Chr8 9645001 9673000 27999 OsKitaake08g090800
Deletion Chr9 9818001 9903000 84999 3
Deletion Chr8 9839001 9873000 33999 OsKitaake08g091700
Deletion Chr5 9862001 9889000 26999 OsKitaake05g089500
Deletion Chr2 9868001 9884000 15999
Deletion Chr5 9914001 9934000 19999 2
Deletion Chr10 9977001 10006000 28999
Deletion Chr8 10026001 10093000 66999
Deletion Chr9 10109001 10129000 19999
Deletion Chr8 10122001 10145000 22999 2
Deletion Chr5 10191001 10208000 16999
Deletion Chr9 10202001 10240000 37999 4
Deletion Chr4 10203001 10220000 16999
Deletion Chr7 10263001 10293000 29999 OsKitaake07g100700
Deletion Chr6 10288908 10288910 2
Deletion Chr6 10306001 10317000 10999
Deletion Chr8 10392001 10413000 20999
Deletion Chr6 10497001 10524000 26999 3
Deletion Chr7 10536001 10579000 42999 OsKitaake07g101500
Deletion Chr9 10600001 10623000 22999 2
Deletion Chr8 10706001 10761000 54999 5
Deletion Chr7 10801001 10824000 22999
Deletion Chr4 10849001 10906000 56999 6
Deletion Chr6 10857001 10895000 37999 OsKitaake06g121250
Deletion Chr7 10867001 11008000 140999 9
Deletion Chr6 10966001 10986000 19999 OsKitaake06g122200
Deletion Chr11 10978001 11010000 31999
Deletion Chr4 11052001 11076000 23999
Deletion Chr11 11161001 11184000 22999
Deletion Chr4 11178001 11200000 21999
Deletion Chr8 11193001 11214000 20999 OsKitaake08g099700
Deletion Chr12 11265001 11285000 19999
Deletion Chr8 11284001 11295000 10999
Deletion Chr6 11325001 11350000 24999 3
Deletion Chr4 11330001 11357000 26999
Deletion Chr12 11368001 11402000 33999
Deletion Chr6 11370001 11380000 9999
Deletion Chr5 11380001 11424000 43999 7
Deletion Chr12 11444001 11477000 32999 OsKitaake12g102401
Deletion Chr10 11538001 11556000 17999 2
Deletion Chr6 11543001 11611000 67999
Deletion Chr4 11547001 11562000 14999
Deletion Chr2 11628001 11644000 15999 OsKitaake02g134100
Deletion Chr11 11629001 11659000 29999
Deletion Chr6 11734001 11747000 12999 OsKitaake06g128000
Deletion Chr11 11743001 11751000 7999
Deletion Chr8 11853001 11875000 21999 OsKitaake08g104200
Deletion Chr2 11895001 11910000 14999
Deletion Chr12 11898001 11917000 18999 3
Deletion Chr7 11924001 11959000 34999 2
Deletion Chr5 11945001 12038000 92999 OsKitaake05g097200
Deletion Chr10 11965001 11981000 15999 2
Deletion Chr8 12038001 12073000 34999
Deletion Chr7 12067001 12085000 17999 OsKitaake07g109500
Deletion Chr6 12087001 12116000 28999 OsKitaake06g130600
Deletion Chr4 12119001 12149000 29999 4
Deletion Chr8 12133001 12159000 25999 OsKitaake08g105700
Deletion Chr6 12142001 12161000 18999
Deletion Chr1 12160001 12185000 24999 OsKitaake01g148300
Deletion Chr4 12202001 12225000 22999 OsKitaake04g059200
Deletion Chr5 12205001 12231000 25999
Deletion Chr6 12250001 12271000 20999 OsKitaake06g131500
Deletion Chr3 12287001 12311000 23999
Deletion Chr6 12299001 12323000 23999 4
Deletion Chr2 12336001 12351000 14999
Deletion Chr6 12366001 12428000 61999 3
Deletion Chr6 12469001 12504000 34999
Deletion Chr9 12496001 12534000 37999 2
Deletion Chr10 12525001 12545000 19999 2
Deletion Chr8 12557001 12601000 43999 3
Deletion Chr5 12832001 12855000 22999 2
Deletion Chr7 12843001 12867000 23999 OsKitaake07g114000
Deletion Chr8 12855001 12893000 37999
Deletion Chr11 12988001 13033000 44999 OsKitaake11g114400
Deletion Chr3 12990001 13022000 31999 5
Deletion Chr9 13001001 13017000 15999
Deletion Chr4 13014001 13043000 28999
Deletion Chr5 13046001 13080000 33999 6
Deletion Chr3 13094001 13128000 33999 2
Deletion Chr1 13106001 13118000 11999 OsKitaake01g155300
Deletion Chr7 13116001 13135000 18999 2
Deletion Chr6 13140001 13160000 19999
Deletion Chr8 13187001 13275000 87999 2
Deletion Chr1 13192001 13214000 21999 OsKitaake01g155600
Deletion Chr7 13241001 13337000 95999 10
Deletion Chr4 13268001 13300000 31999
Deletion Chr6 13308001 13344000 35999 2
Deletion Chr10 13315001 13335000 19999 OsKitaake10g079800
Deletion Chr10 13356001 13380000 23999 OsKitaake10g079900
Deletion Chr10 13459001 13478000 18999 OsKitaake10g080900
Deletion Chr5 13491001 13513000 21999
Deletion Chr6 13506001 13526000 19999
Deletion Chr4 13528001 13593000 64999 6
Deletion Chr11 13563001 13600000 36999 2
Deletion Chr7 13584001 13618000 33999
Deletion Chr4 13649001 13692000 42999 OsKitaake04g066200
Deletion Chr2 13696001 13737000 40999 OsKitaake02g150350
Deletion Chr1 13745001 13767000 21999 2
Deletion Chr5 13785001 13799000 13999 2
Deletion Chr12 13799001 13832000 32999 3
Deletion Chr7 13807001 13832000 24999
Deletion Chr6 13875001 13899000 23999 3
Deletion Chr6 13942001 13982000 39999 3
Deletion Chr8 13969001 14032000 62999 2
Deletion Chr11 13986001 14002000 15999
Deletion Chr6 14013001 14024000 10999 OsKitaake06g146000
Deletion Chr5 14017001 14029000 11999 2
Deletion Chr6 14090001 14156000 65999 6
Deletion Chr2 14107001 14119000 11999
Deletion Chr7 14176001 14211000 34999 OsKitaake07g122500
Deletion Chr10 14364001 14396000 31999
Deletion Chr6 14391001 14424000 32999 OsKitaake06g147900
Deletion Chr7 14448001 14474000 25999
Deletion Chr6 14501001 14528000 26999
Deletion Chr6 14547001 14609000 61999 4
Deletion Chr1 14571001 14588000 16999 3
Deletion Chr6 14694001 14715000 20999 OsKitaake06g149300
Deletion Chr8 14717001 14731000 13999
Deletion Chr5 14802001 14822000 19999 OsKitaake05g112900
Deletion Chr9 14808001 14850000 41999 4
Deletion Chr1 14821001 14895000 73999 7
Deletion Chr2 14823001 14898000 74999 OsKitaake02g157500
Deletion Chr12 15029001 15069000 39999 OsKitaake12g118500
Deletion Chr6 15081001 15127000 45999 OsKitaake06g150900
Deletion Chr6 15169001 15219000 49999 5
Deletion Chr2 15171001 15191000 19999 OsKitaake02g158700
Deletion Chr6 15256001 15330000 73999 2
Deletion Chr4 15331001 15352000 20999 3
Deletion Chr5 15562001 15582000 19999 7
Deletion Chr7 15634001 15658000 23999
Deletion Chr1 15646001 15666000 19999 OsKitaake01g170400
Deletion Chr11 15797001 15826000 28999 3
Deletion Chr5 15821001 15841000 19999
Deletion Chr8 15839001 15866000 26999 OsKitaake08g122300
Deletion Chr11 15842001 15905000 62999 4
Deletion Chr7 15890001 15907000 16999
Deletion Chr8 16011001 16081000 69999 6
Deletion Chr6 16041001 16078000 36999 4
Deletion Chr2 16072001 16091000 18999 OsKitaake02g166300
Deletion Chr6 16099001 16122000 22999 OsKitaake06g154900
Deletion Chr1 16212001 16321000 108999 9
Deletion Chr4 16254001 16312000 57999 2
Deletion Chr6 16442001 16468000 25999
Deletion Chr4 16634001 16670000 35999 2
Deletion Chr6 16684001 16700000 15999 OsKitaake06g157700
Deletion Chr3 16731001 16748000 16999
Deletion Chr11 16834001 16885000 50999 3
Deletion Chr4 16862001 16887000 24999 OsKitaake04g082700
Deletion Chr7 16879001 16958000 78999 2
Deletion Chr4 16921001 16939000 17999 4
Deletion Chr3 17003001 17027000 23999 OsKitaake03g211750
Deletion Chr2 17085001 17108000 22999 OsKitaake02g172800
Deletion Chr8 17185001 17255000 69999 3
Deletion Chr7 17187001 17220000 32999
Deletion Chr10 17196001 17209000 12999
Deletion Chr4 17270001 17299000 28999 OsKitaake04g084700
Deletion Chr2 17276001 17288000 11999
Deletion Chr6 17284001 17322000 37999 5
Deletion Chr10 17315001 17339000 23999
Deletion Chr2 17342001 17370000 27999 5
Deletion Chr7 17359001 17414000 54999 4
Deletion Chr11 17378001 17413000 34999 3
Deletion Chr4 17387001 17422000 34999 5
Deletion Chr1 17448001 17480000 31999 OsKitaake01g179300
Deletion Chr5 17449001 17477000 27999
Deletion Chr8 17537001 17580000 42999 3
Deletion Chr7 17545001 17580000 34999 OsKitaake07g142400
Deletion Chr3 17711001 17733000 21999
Deletion Chr4 17714001 17748000 33999 3
Deletion Chr1 17724001 17773000 48999 3
Deletion Chr6 17732001 17747000 14999 OsKitaake06g163600
Deletion Chr4 17789001 17811000 21999 OsKitaake04g089100
Deletion Chr10 17866001 17889000 22999 7
Deletion Chr1 18013001 18033000 19999
Deletion Chr10 18015001 18031000 15999 OsKitaake10g127000
Deletion Chr2 18058001 18076000 17999 OsKitaake02g179900
Deletion Chr8 18069001 18119000 49999 3
Deletion Chr10 18169001 18199000 29999 4
Deletion Chr8 18205001 18219000 13999 OsKitaake08g135301
Deletion Chr7 18359001 18385000 25999 2
Deletion Chr8 18389001 18447000 57999 5
Deletion Chr12 18401001 18446000 44999 3
Deletion Chr3 18448001 18493000 44999 3
Deletion Chr7 18476001 18487000 10999 4
Deletion Chr1 18632001 18654000 21999 OsKitaake01g186800
Deletion Chr7 18663001 18676000 12999
Deletion Chr8 18685001 18708000 22999 2
Deletion Chr2 18689001 18709000 19999 OsKitaake02g184000
Deletion Chr7 18701001 18723000 21999 2
Deletion Chr5 18714001 18736000 21999 OsKitaake05g146000
Deletion Chr1 18722001 18746000 23999 3
Deletion Chr11 18761001 18782000 20999 4
Deletion Chr12 18813001 18831000 17999
Deletion Chr12 18879001 18968000 88999 6
Deletion Chr11 18899001 18925000 25999 3
Deletion Chr4 18930001 18946000 15999 4
Deletion Chr12 19092001 19120000 27999
Deletion Chr10 19199001 19255000 55999 5
Deletion Chr8 19235001 19271000 35999
Deletion Chr1 19289001 19324000 34999 3
Deletion Chr11 19294001 19312000 17999 OsKitaake11g149900
Deletion Chr11 19385357 19385376 19
Deletion Chr3 19418001 19466000 47999
Deletion Chr2 19458001 19470000 11999 OsKitaake02g190650
Deletion Chr11 19490001 19512000 21999
Deletion Chr1 19491001 19525000 33999 OsKitaake01g194700
Deletion Chr1 19656001 19681000 24999 7
Deletion Chr8 19667001 19711000 43999 3
Deletion Chr2 19686001 19706000 19999 2
Deletion Chr1 19777001 19807000 29999 2
Deletion Chr5 19831001 19855000 23999 5
Deletion Chr12 19849001 19869000 19999 OsKitaake12g148200
Deletion Chr2 19919001 19956000 36999 OsKitaake02g194300
Deletion Chr1 19948001 19964000 15999
Deletion Chr1 20017001 20052000 34999
Deletion Chr9 20022001 20046000 23999 2
Deletion Chr10 20052001 20122000 69999 8
Deletion Chr2 20067196 20067199 3
Deletion Chr3 20071001 20081000 9999 OsKitaake03g230201
Deletion Chr2 20084989 20084991 2
Deletion Chr2 20211001 20253000 41999 3
Deletion Chr5 20443001 20469000 25999 OsKitaake05g162800
Deletion Chr1 20539001 20568000 28999 3
Deletion Chr3 20573001 20613000 39999
Deletion Chr6 20592001 20614000 21999 OsKitaake06g184500
Deletion Chr3 20670001 20682000 11999
Deletion Chr9 20695001 20749000 53999 7
Deletion Chr3 20744001 20783000 38999 OsKitaake03g232000
Deletion Chr1 20753001 20774000 20999
Deletion Chr2 20802001 20859000 56999 8
Deletion Chr1 20829001 20915000 85999 6
Deletion Chr6 20848001 20882000 33999 4
Deletion Chr8 20933001 20955000 21999 3
Deletion Chr1 20966001 20984000 17999 2
Deletion Chr11 21052001 21072000 19999 4
Deletion Chr7 21058001 21078000 19999 4
Deletion Chr1 21149001 21181000 31999 OsKitaake01g206900
Deletion Chr3 21206001 21252000 45999 2
Deletion Chr11 21224001 21251000 26999 OsKitaake11g168200
Deletion Chr12 21250001 21279000 28999
Deletion Chr9 21314001 21325000 10999 OsKitaake09g184200
Deletion Chr7 21454001 21474000 19999 2
Deletion Chr2 21621001 21642000 20999
Deletion Chr1 21724001 21754000 29999 4
Deletion Chr6 21749001 21772000 22999
Deletion Chr6 21840001 21869000 28999 OsKitaake06g192500
Deletion Chr3 21848001 21869000 20999 2
Deletion Chr5 21900001 22004000 103999 12
Deletion Chr7 21935001 21958000 22999 2
Deletion Chr4 22230001 22248000 17999 OsKitaake04g129900
Deletion Chr9 22276001 22316000 39999 4
Deletion Chr12 22346001 22358000 11999
Deletion Chr12 22372001 22388000 15999
Deletion Chr5 22516001 22541000 24999 5
Deletion Chr3 22533001 22548000 14999 2
Deletion Chr2 22545001 22580000 34999 5
Deletion Chr7 22591001 22675000 83999 9
Deletion Chr3 22594001 22614000 19999
Deletion Chr1 22683001 22711000 27999 3
Deletion Chr4 22790001 22809000 18999 4
Deletion Chr12 22854001 22872000 17999 2
Deletion Chr6 22900001 22917000 16999 OsKitaake06g202500
Deletion Chr3 23015001 23048000 32999 4
Deletion Chr11 23026001 23066000 39999 2
Deletion Chr5 23047001 23075000 27999 2
Deletion Chr4 23132001 23149000 16999
Deletion Chr1 23246001 23271000 24999 2
Deletion Chr2 23404001 23433000 28999 4
Deletion Chr6 23509001 23530000 20999 3
Deletion Chr6 23558001 23583000 24999 2
Deletion Chr11 23579001 23596000 16999
Deletion Chr5 23821001 23838000 16999 2
Deletion Chr1 23823001 23838000 14999
Deletion Chr11 23857001 23899000 41999 6
Deletion Chr6 24009001 24029000 19999 OsKitaake06g213000
Deletion Chr7 24018001 24035000 16999 OsKitaake07g212300
Deletion Chr12 24114001 24134000 19999 2
Deletion Chr2 24143001 24191000 47999 11
Deletion Chr6 24238001 24266000 27999
Deletion Chr8 24384001 24421000 36999 2
Deletion Chr12 24476001 24490000 13999 2
Deletion Chr3 24770001 24799000 28999
Deletion Chr2 24942001 24964000 21999
Deletion Chr6 25045001 25108000 62999 8
Deletion Chr11 25070001 25163000 92999 10
Deletion Chr3 25180001 25199000 18999 OsKitaake03g266600
Deletion Chr3 25247001 25265000 17999 OsKitaake03g267000
Deletion Chr11 25356001 25382000 25999 8
Deletion Chr11 25417001 25464000 46999 7
Deletion Chr2 25517001 25588000 70999 10
Deletion Chr2 25606001 25624000 17999 6
Deletion Chr12 25611001 25647000 35999 3
Deletion Chr1 25698001 25709000 10999 3
Deletion Chr2 25829001 25838000 8999
Deletion Chr5 26330001 26384000 53999 7
Deletion Chr11 26470001 26493000 22999
Deletion Chr7 26513001 26566000 52999 8
Deletion Chr7 26596001 26616000 19999 3
Deletion Chr5 26603001 26626000 22999 7
Deletion Chr4 26957001 26998000 40999 5
Deletion Chr1 26995001 27022000 26999 6
Deletion Chr11 27056001 27097000 40999 8
Deletion Chr5 27094001 27124000 29999 7
Deletion Chr11 27129001 27148000 18999 2
Deletion Chr6 27241001 27261000 19999 OsKitaake06g245400
Deletion Chr7 27329001 27405000 75999 3
Deletion Chr6 27388001 27403000 14999 2
Deletion Chr3 27468001 27485000 16999 2
Deletion Chr2 27542001 27572000 29999 3
Deletion Chr7 27557001 27581000 23999 6
Deletion Chr2 27630001 27655000 24999
Deletion Chr7 27720001 27743000 22999 OsKitaake07g258800
Deletion Chr11 28338001 28391000 52999
Deletion Chr4 28357712 28357713 1
Deletion Chr6 28435001 28454000 18999 2
Deletion Chr2 28653001 28682000 28999 4
Deletion Chr1 28877001 28894000 16999 5
Deletion Chr4 28880001 28903000 22999 4
Deletion Chr7 29078001 29095000 16999 4
Deletion Chr3 29135001 29163000 27999 6
Deletion Chr11 29324001 29356000 31999
Deletion Chr5 29400001 29414000 13999
Deletion Chr5 29466001 29491000 24999
Deletion Chr1 29508001 29520000 11999 2
Deletion Chr4 29521001 29549000 27999 OsKitaake04g226500
Deletion Chr2 29711001 29738000 26999 7
Deletion Chr5 29714001 29737000 22999
Deletion Chr3 29809001 29836000 26999 3
Deletion Chr2 29811001 29841000 29999 3
Deletion Chr1 30590001 30607000 16999 2
Deletion Chr1 30827001 30848000 20999 4
Deletion Chr6 31032001 31045000 12999
Deletion Chr3 31261001 31323000 61999 9
Deletion Chr2 31946001 31963000 16999 3
Deletion Chr2 32094001 32127000 32999 2
Deletion Chr3 32125001 32149000 23999 2
Deletion Chr4 32874001 32888000 13999 2
Deletion Chr1 32884001 32919000 34999 7
Deletion Chr4 33101001 33130000 28999 6
Deletion Chr1 33290001 33337000 46999 10
Deletion Chr3 33496001 33517000 20999 OsKitaake03g358900
Deletion Chr1 33683001 33701000 17999 6
Deletion Chr4 34142001 34164000 21999
Deletion Chr2 34244001 34264000 19999 OsKitaake02g356000
Deletion Chr2 34559001 34597000 37999 5
Deletion Chr4 35365001 35421000 55999 10
Deletion Chr2 35527001 35564000 36999 6
Deletion Chr3 35701001 35723000 21999 3
Deletion Chr3 35830001 35869000 38999 10
Deletion Chr4 35860001 35876000 15999 OsKitaake04g307300
Deletion Chr3 36024001 36044000 19999 4
Deletion Chr1 36578001 36598000 19999 2
Deletion Chr1 36854001 36882000 27999 7
Deletion Chr1 37751001 37786000 34999 5
Deletion Chr1 38101001 38143000 41999 6
Deletion Chr1 40404001 40431000 26999 4
Deletion Chr1 41390001 41411000 20999 2
Deletion Chr1 42193001 42230000 36999 10
Deletion Chr1 43334008 43334021 13
Deletion Chr1 43336001 43355000 18999 6

Insertions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37108282 37108286 3
Insertion Chr2 27077297 27077300 2
Insertion Chr2 35509979 35509984 4
Insertion Chr3 12851051 12851054 2
Insertion Chr3 15611129 15611132 2
Insertion Chr3 15911242 15911245 2
Insertion Chr4 20651275 20651278 2
Insertion Chr6 5878477 5878480 2
Insertion Chr6 16479735 16479738 2
Insertion Chr6 27536936 27536939 2
Insertion Chr8 5319637 5319640 2
Insertion Chr9 1309103 1309106 2
Insertion Chr9 7344810 7344813 2
Insertion Chr9 12579202 12579205 2
Insertion Chr10 354263 354266 2
Insertion Chr10 12686194 12686197 2
Insertion Chr11 844990 844993 2
Insertion Chr11 6420656 6420659 2
Insertion Chr2 20834599 20834602 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 13893865 14116420
Inversion Chr10 19641229 20121688 OsKitaake10g145100
Inversion Chr4 20562027 20708611 OsKitaake04g112100
Inversion Chr4 20562041 20708614 OsKitaake04g112100

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 20055832 Chr7 4044365 OsKitaake10g151600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1901047	A-G	Homo	INTRON
SBS	Chr1	24529070	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g236300
SBS	Chr1	24529072	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g236300
SBS	Chr1	36790548	G-A	Hetero	INTERGENIC
SBS	Chr2	1639289	C-G	Homo	INTERGENIC
SBS	Chr2	16342749	G-A	Homo	UTR_5_PRIME
SBS	Chr2	16342776	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g167800
SBS	Chr2	16342782	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g167800
SBS	Chr2	30457716	T-A	Homo	INTERGENIC
SBS	Chr3	399083	C-G	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	34440435	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	837176	C-A	Hetero	INTERGENIC
SBS	Chr5	4544415	A-G	Hetero	INTERGENIC
SBS	Chr5	4544428	A-T	Hetero	INTERGENIC
SBS	Chr5	5064088	T-C	Hetero	INTERGENIC
SBS	Chr5	5701281	C-T	Hetero	INTERGENIC
SBS	Chr5	16352540	T-A	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	7712897	C-A	Homo	INTERGENIC
SBS	Chr7	4833940	C-T	Hetero	INTERGENIC
SBS	Chr7	9185630	G-A	Homo	INTERGENIC
SBS	Chr7	9263403	C-T	Homo	INTERGENIC
SBS	Chr7	11890431	T-G	Homo	INTRON
SBS	Chr7	27005228	G-T	Hetero	INTERGENIC
SBS	Chr7	27815653	C-T	Hetero	INTERGENIC
SBS	Chr7	27815654	C-T	Hetero	INTERGENIC
SBS	Chr8	1523321	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	24704086	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	6580364	G-T	Hetero	INTERGENIC
SBS	Chr9	10380490	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g064600
SBS	Chr9	13683730	C-T	Hetero	INTERGENIC
SBS	Chr10	10962299	C-T	Hetero	INTERGENIC
SBS	Chr10	11235798	A-G	Homo	INTERGENIC
SBS	Chr10	13756851	C-A	Homo	INTERGENIC
SBS	Chr10	14599562	C-T	Hetero	INTERGENIC
SBS	Chr11	22052559	C-T	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr12	2888466	C-T	Homo	INTERGENIC
SBS	Chr12	12777601	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	18973618	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	29606	29625	19
Deletion	Chr9	559001	580000	20999
Deletion	Chr9	640001	659000	18999	OsKitaake09g004500
Deletion	Chr12	804001	825000	20999	2
Deletion	Chr7	843001	862000	18999	2
Deletion	Chr11	966001	989000	22999	4
Deletion	Chr3	994001	1020000	25999	5
Deletion	Chr9	1028001	1069000	40999	OsKitaake09g006400
Deletion	Chr11	1151001	1176000	24999	2
Deletion	Chr9	1153001	1167000	13999	OsKitaake09g006900
Deletion	Chr12	1173001	1203000	29999	OsKitaake12g017200
Deletion	Chr8	1301001	1327000	25999	2
Deletion	Chr9	1343001	1364000	20999
Deletion	Chr2	1371001	1402000	30999	5
Deletion	Chr4	1438001	1452000	13999	OsKitaake04g010500
Deletion	Chr9	1605001	1671000	65999	OsKitaake09g009200
Deletion	Chr3	1961001	1987000	25999	8
Deletion	Chr4	2036001	2105000	68999	5
Deletion	Chr9	2184001	2202000	17999	OsKitaake09g011400
Deletion	Chr8	2250001	2265000	14999	OsKitaake08g026800
Deletion	Chr10	2297001	2341000	43999	7
Deletion	Chr2	2486001	2521000	34999	2
Deletion	Chr6	2789001	2807000	17999	2
Deletion	Chr10	2797001	2820000	22999	4
Deletion	Chr3	2834001	2855000	20999	2
Deletion	Chr2	2949001	2975000	25999	2
Deletion	Chr3	2987001	2998000	10999	OsKitaake03g042200
Deletion	Chr7	3101001	3133000	31999	OsKitaake07g038800
Deletion	Chr5	3208001	3227000	18999	OsKitaake05g038400
Deletion	Chr6	3260001	3310000	49999	6
Deletion	Chr7	3329001	3405000	75999	10
Deletion	Chr5	3344001	3370000	25999	3
Deletion	Chr2	3386001	3406000	19999	4
Deletion	Chr4	3482001	3569000	86999	2
Deletion	Chr10	3488001	3518000	29999	OsKitaake10g026400
Deletion	Chr11	3534001	3569000	34999	4
Deletion	Chr11	3611001	3662000	50999	13
Deletion	Chr10	3775001	3806000	30999	2
Deletion	Chr10	3818001	3859000	40999	2
Deletion	Chr1	3839001	3868000	28999
Deletion	Chr9	3904001	3947000	42999	OsKitaake09g020900
Deletion	Chr11	3905001	3945000	39999	5
Deletion	Chr2	3967001	3990000	22999	OsKitaake02g056720
Deletion	Chr10	4152001	4238000	85999	5
Deletion	Chr7	4156001	4180000	23999	3
Deletion	Chr12	4218001	4245000	26999	OsKitaake12g057700
Deletion	Chr9	4220001	4263000	42999	OsKitaake09g023100
Deletion	Chr4	4264001	4300000	35999	2
Deletion	Chr6	4318001	4335000	16999	2
Deletion	Chr12	4382001	4426000	43999	2
Deletion	Chr10	4449001	4483000	33999	2
Deletion	Chr7	4454001	4466000	11999	OsKitaake07g055900
Deletion	Chr11	4531001	4557000	25999	OsKitaake11g060300
Deletion	Chr8	4571001	4584000	12999	4
Deletion	Chr6	4598001	4620000	21999	2
Deletion	Chr7	4766001	4826000	59999	6
Deletion	Chr12	4784001	4873000	88999	8
Deletion	Chr10	4827001	4846000	18999	3
Deletion	Chr11	4883001	4906000	22999	2
Deletion	Chr10	4930001	4990000	59999	3
Deletion	Chr3	5070001	5084000	13999	3
Deletion	Chr8	5139001	5160000	20999	OsKitaake08g056000
Deletion	Chr12	5226001	5251000	24999	4
Deletion	Chr1	5279001	5290000	10999	2
Deletion	Chr8	5330001	5378000	47999	3
Deletion	Chr5	5355001	5380000	24999
Deletion	Chr9	5385001	5398000	12999	OsKitaake09g030900
Deletion	Chr5	5452001	5480000	27999	OsKitaake05g059300
Deletion	Chr4	5529001	5595000	65999	5
Deletion	Chr4	5653001	5733000	79999	2
Deletion	Chr11	5662001	5681000	18999	4
Deletion	Chr11	5772001	5793000	20999	3
Deletion	Chr4	5869001	5896000	26999	3
Deletion	Chr5	5889001	5921000	31999
Deletion	Chr8	5958001	5980000	21999	OsKitaake08g064600
Deletion	Chr5	5990001	6019000	28999	OsKitaake05g180600
Deletion	Chr2	6058001	6096000	37999	2
Deletion	Chr4	6096001	6139000	42999	OsKitaake04g030600
Deletion	Chr9	6139001	6158000	18999	3
Deletion	Chr4	6204001	6220000	15999
Deletion	Chr11	6303001	6331000	27999	OsKitaake11g075400
Deletion	Chr7	6382001	6413000	30999	OsKitaake07g074500
Deletion	Chr2	6442001	6463000	20999
Deletion	Chr3	6447001	6466000	18999	6
Deletion	Chr12	6469001	6499000	29999	3
Deletion	Chr4	6529001	6562000	32999	OsKitaake04g033200
Deletion	Chr12	6603001	6623000	19999	3
Deletion	Chr6	6644001	6655000	10999	OsKitaake06g087000
Deletion	Chr4	6731001	6772000	40999	3
Deletion	Chr4	6814001	6832000	17999
Deletion	Chr7	6858001	6883000	24999
Deletion	Chr5	6880001	6912000	31999	3
Deletion	Chr1	6896001	6919000	22999	6
Deletion	Chr11	6973001	7014000	40999	4
Deletion	Chr7	6976001	6989000	12999	6
Deletion	Chr5	6993001	7025000	31999	2
Deletion	Chr7	7162001	7180000	17999
Deletion	Chr1	7246001	7270000	23999	3
Deletion	Chr2	7254001	7276000	21999	6
Deletion	Chr4	7269001	7286000	16999
Deletion	Chr8	7282001	7309000	26999
Deletion	Chr7	7325001	7341000	15999
Deletion	Chr7	7375001	7428000	52999	4
Deletion	Chr10	7426001	7506000	79999	3
Deletion	Chr7	7488001	7543000	54999	7
Deletion	Chr8	7580001	7629000	48999
Deletion	Chr11	7585001	7615000	29999	OsKitaake11g085300
Deletion	Chr12	7636001	7668000	31999	2
Deletion	Chr3	7669001	7692000	22999	4
Deletion	Chr10	7716001	7829000	112999	4
Deletion	Chr7	7759001	7829000	69999	5
Deletion	Chr9	7799001	7812000	12999
Deletion	Chr4	7843001	7866000	22999
Deletion	Chr12	7896001	7917000	20999
Deletion	Chr3	8014001	8042000	27999	3
Deletion	Chr6	8162001	8186000	23999	3
Deletion	Chr9	8231001	8345000	113999	8
Deletion	Chr8	8250001	8330000	79999	3
Deletion	Chr1	8290001	8309000	18999	7
Deletion	Chr4	8336001	8355000	18999
Deletion	Chr2	8490001	8522000	31999	7
Deletion	Chr7	8505001	8530000	24999	2
Deletion	Chr7	8589001	8615000	25999	3
Deletion	Chr5	8598001	8616000	17999
Deletion	Chr2	8632001	8650000	17999	2
Deletion	Chr4	8689001	8730000	40999	4
Deletion	Chr11	8714001	8781000	66999	7
Deletion	Chr12	8747001	8767000	19999	OsKitaake12g088200
Deletion	Chr12	8792001	8814000	21999	3
Deletion	Chr6	8902001	8916000	13999	OsKitaake06g107200
Deletion	Chr3	8906001	8917000	10999	3
Deletion	Chr4	8971001	8983000	11999	OsKitaake04g046400
Deletion	Chr4	9005001	9021000	15999	OsKitaake04g046500
Deletion	Chr4	9042001	9098000	55999
Deletion	Chr7	9167001	9181000	13999	2
Deletion	Chr7	9190001	9201000	10999
Deletion	Chr7	9209001	9237000	27999	OsKitaake07g095400
Deletion	Chr1	9216001	9233000	16999	2
Deletion	Chr10	9251915	9251926	11
Deletion	Chr8	9253001	9272000	18999	2
Deletion	Chr10	9258001	9284000	25999
Deletion	Chr7	9291001	9313000	21999
Deletion	Chr6	9333001	9385000	51999	5
Deletion	Chr12	9471001	9497000	25999	3
Deletion	Chr6	9502001	9512000	9999	OsKitaake06g112300
Deletion	Chr4	9524001	9563000	38999	2
Deletion	Chr7	9535001	9558000	22999	OsKitaake07g096800
Deletion	Chr8	9548001	9568000	19999
Deletion	Chr5	9556001	9615000	58999	6
Deletion	Chr7	9582001	9611000	28999
Deletion	Chr4	9637001	9661000	23999
Deletion	Chr8	9645001	9673000	27999	OsKitaake08g090800
Deletion	Chr9	9818001	9903000	84999	3
Deletion	Chr8	9839001	9873000	33999	OsKitaake08g091700
Deletion	Chr5	9862001	9889000	26999	OsKitaake05g089500
Deletion	Chr2	9868001	9884000	15999
Deletion	Chr5	9914001	9934000	19999	2
Deletion	Chr10	9977001	10006000	28999
Deletion	Chr8	10026001	10093000	66999
Deletion	Chr9	10109001	10129000	19999
Deletion	Chr8	10122001	10145000	22999	2
Deletion	Chr5	10191001	10208000	16999
Deletion	Chr9	10202001	10240000	37999	4
Deletion	Chr4	10203001	10220000	16999
Deletion	Chr7	10263001	10293000	29999	OsKitaake07g100700
Deletion	Chr6	10288908	10288910	2
Deletion	Chr6	10306001	10317000	10999
Deletion	Chr8	10392001	10413000	20999
Deletion	Chr6	10497001	10524000	26999	3
Deletion	Chr7	10536001	10579000	42999	OsKitaake07g101500
Deletion	Chr9	10600001	10623000	22999	2
Deletion	Chr8	10706001	10761000	54999	5
Deletion	Chr7	10801001	10824000	22999
Deletion	Chr4	10849001	10906000	56999	6
Deletion	Chr6	10857001	10895000	37999	OsKitaake06g121250
Deletion	Chr7	10867001	11008000	140999	9
Deletion	Chr6	10966001	10986000	19999	OsKitaake06g122200
Deletion	Chr11	10978001	11010000	31999
Deletion	Chr4	11052001	11076000	23999
Deletion	Chr11	11161001	11184000	22999
Deletion	Chr4	11178001	11200000	21999
Deletion	Chr8	11193001	11214000	20999	OsKitaake08g099700
Deletion	Chr12	11265001	11285000	19999
Deletion	Chr8	11284001	11295000	10999
Deletion	Chr6	11325001	11350000	24999	3
Deletion	Chr4	11330001	11357000	26999
Deletion	Chr12	11368001	11402000	33999
Deletion	Chr6	11370001	11380000	9999
Deletion	Chr5	11380001	11424000	43999	7
Deletion	Chr12	11444001	11477000	32999	OsKitaake12g102401
Deletion	Chr10	11538001	11556000	17999	2
Deletion	Chr6	11543001	11611000	67999
Deletion	Chr4	11547001	11562000	14999
Deletion	Chr2	11628001	11644000	15999	OsKitaake02g134100
Deletion	Chr11	11629001	11659000	29999
Deletion	Chr6	11734001	11747000	12999	OsKitaake06g128000
Deletion	Chr11	11743001	11751000	7999
Deletion	Chr8	11853001	11875000	21999	OsKitaake08g104200
Deletion	Chr2	11895001	11910000	14999
Deletion	Chr12	11898001	11917000	18999	3
Deletion	Chr7	11924001	11959000	34999	2
Deletion	Chr5	11945001	12038000	92999	OsKitaake05g097200
Deletion	Chr10	11965001	11981000	15999	2
Deletion	Chr8	12038001	12073000	34999
Deletion	Chr7	12067001	12085000	17999	OsKitaake07g109500
Deletion	Chr6	12087001	12116000	28999	OsKitaake06g130600
Deletion	Chr4	12119001	12149000	29999	4
Deletion	Chr8	12133001	12159000	25999	OsKitaake08g105700
Deletion	Chr6	12142001	12161000	18999
Deletion	Chr1	12160001	12185000	24999	OsKitaake01g148300
Deletion	Chr4	12202001	12225000	22999	OsKitaake04g059200
Deletion	Chr5	12205001	12231000	25999
Deletion	Chr6	12250001	12271000	20999	OsKitaake06g131500
Deletion	Chr3	12287001	12311000	23999
Deletion	Chr6	12299001	12323000	23999	4
Deletion	Chr2	12336001	12351000	14999
Deletion	Chr6	12366001	12428000	61999	3
Deletion	Chr6	12469001	12504000	34999
Deletion	Chr9	12496001	12534000	37999	2
Deletion	Chr10	12525001	12545000	19999	2
Deletion	Chr8	12557001	12601000	43999	3
Deletion	Chr5	12832001	12855000	22999	2
Deletion	Chr7	12843001	12867000	23999	OsKitaake07g114000
Deletion	Chr8	12855001	12893000	37999
Deletion	Chr11	12988001	13033000	44999	OsKitaake11g114400
Deletion	Chr3	12990001	13022000	31999	5
Deletion	Chr9	13001001	13017000	15999
Deletion	Chr4	13014001	13043000	28999
Deletion	Chr5	13046001	13080000	33999	6
Deletion	Chr3	13094001	13128000	33999	2
Deletion	Chr1	13106001	13118000	11999	OsKitaake01g155300
Deletion	Chr7	13116001	13135000	18999	2
Deletion	Chr6	13140001	13160000	19999
Deletion	Chr8	13187001	13275000	87999	2
Deletion	Chr1	13192001	13214000	21999	OsKitaake01g155600
Deletion	Chr7	13241001	13337000	95999	10
Deletion	Chr4	13268001	13300000	31999
Deletion	Chr6	13308001	13344000	35999	2
Deletion	Chr10	13315001	13335000	19999	OsKitaake10g079800
Deletion	Chr10	13356001	13380000	23999	OsKitaake10g079900
Deletion	Chr10	13459001	13478000	18999	OsKitaake10g080900
Deletion	Chr5	13491001	13513000	21999
Deletion	Chr6	13506001	13526000	19999
Deletion	Chr4	13528001	13593000	64999	6
Deletion	Chr11	13563001	13600000	36999	2
Deletion	Chr7	13584001	13618000	33999
Deletion	Chr4	13649001	13692000	42999	OsKitaake04g066200
Deletion	Chr2	13696001	13737000	40999	OsKitaake02g150350
Deletion	Chr1	13745001	13767000	21999	2
Deletion	Chr5	13785001	13799000	13999	2
Deletion	Chr12	13799001	13832000	32999	3
Deletion	Chr7	13807001	13832000	24999
Deletion	Chr6	13875001	13899000	23999	3
Deletion	Chr6	13942001	13982000	39999	3
Deletion	Chr8	13969001	14032000	62999	2
Deletion	Chr11	13986001	14002000	15999
Deletion	Chr6	14013001	14024000	10999	OsKitaake06g146000
Deletion	Chr5	14017001	14029000	11999	2
Deletion	Chr6	14090001	14156000	65999	6
Deletion	Chr2	14107001	14119000	11999
Deletion	Chr7	14176001	14211000	34999	OsKitaake07g122500
Deletion	Chr10	14364001	14396000	31999
Deletion	Chr6	14391001	14424000	32999	OsKitaake06g147900
Deletion	Chr7	14448001	14474000	25999
Deletion	Chr6	14501001	14528000	26999
Deletion	Chr6	14547001	14609000	61999	4
Deletion	Chr1	14571001	14588000	16999	3
Deletion	Chr6	14694001	14715000	20999	OsKitaake06g149300
Deletion	Chr8	14717001	14731000	13999
Deletion	Chr5	14802001	14822000	19999	OsKitaake05g112900
Deletion	Chr9	14808001	14850000	41999	4
Deletion	Chr1	14821001	14895000	73999	7
Deletion	Chr2	14823001	14898000	74999	OsKitaake02g157500
Deletion	Chr12	15029001	15069000	39999	OsKitaake12g118500
Deletion	Chr6	15081001	15127000	45999	OsKitaake06g150900
Deletion	Chr6	15169001	15219000	49999	5
Deletion	Chr2	15171001	15191000	19999	OsKitaake02g158700
Deletion	Chr6	15256001	15330000	73999	2
Deletion	Chr4	15331001	15352000	20999	3
Deletion	Chr5	15562001	15582000	19999	7
Deletion	Chr7	15634001	15658000	23999
Deletion	Chr1	15646001	15666000	19999	OsKitaake01g170400
Deletion	Chr11	15797001	15826000	28999	3
Deletion	Chr5	15821001	15841000	19999
Deletion	Chr8	15839001	15866000	26999	OsKitaake08g122300
Deletion	Chr11	15842001	15905000	62999	4
Deletion	Chr7	15890001	15907000	16999
Deletion	Chr8	16011001	16081000	69999	6
Deletion	Chr6	16041001	16078000	36999	4
Deletion	Chr2	16072001	16091000	18999	OsKitaake02g166300
Deletion	Chr6	16099001	16122000	22999	OsKitaake06g154900
Deletion	Chr1	16212001	16321000	108999	9
Deletion	Chr4	16254001	16312000	57999	2
Deletion	Chr6	16442001	16468000	25999
Deletion	Chr4	16634001	16670000	35999	2
Deletion	Chr6	16684001	16700000	15999	OsKitaake06g157700
Deletion	Chr3	16731001	16748000	16999
Deletion	Chr11	16834001	16885000	50999	3
Deletion	Chr4	16862001	16887000	24999	OsKitaake04g082700
Deletion	Chr7	16879001	16958000	78999	2
Deletion	Chr4	16921001	16939000	17999	4
Deletion	Chr3	17003001	17027000	23999	OsKitaake03g211750
Deletion	Chr2	17085001	17108000	22999	OsKitaake02g172800
Deletion	Chr8	17185001	17255000	69999	3
Deletion	Chr7	17187001	17220000	32999
Deletion	Chr10	17196001	17209000	12999
Deletion	Chr4	17270001	17299000	28999	OsKitaake04g084700
Deletion	Chr2	17276001	17288000	11999
Deletion	Chr6	17284001	17322000	37999	5
Deletion	Chr10	17315001	17339000	23999
Deletion	Chr2	17342001	17370000	27999	5
Deletion	Chr7	17359001	17414000	54999	4
Deletion	Chr11	17378001	17413000	34999	3
Deletion	Chr4	17387001	17422000	34999	5
Deletion	Chr1	17448001	17480000	31999	OsKitaake01g179300
Deletion	Chr5	17449001	17477000	27999
Deletion	Chr8	17537001	17580000	42999	3
Deletion	Chr7	17545001	17580000	34999	OsKitaake07g142400
Deletion	Chr3	17711001	17733000	21999
Deletion	Chr4	17714001	17748000	33999	3
Deletion	Chr1	17724001	17773000	48999	3
Deletion	Chr6	17732001	17747000	14999	OsKitaake06g163600
Deletion	Chr4	17789001	17811000	21999	OsKitaake04g089100
Deletion	Chr10	17866001	17889000	22999	7
Deletion	Chr1	18013001	18033000	19999
Deletion	Chr10	18015001	18031000	15999	OsKitaake10g127000
Deletion	Chr2	18058001	18076000	17999	OsKitaake02g179900
Deletion	Chr8	18069001	18119000	49999	3
Deletion	Chr10	18169001	18199000	29999	4
Deletion	Chr8	18205001	18219000	13999	OsKitaake08g135301
Deletion	Chr7	18359001	18385000	25999	2
Deletion	Chr8	18389001	18447000	57999	5
Deletion	Chr12	18401001	18446000	44999	3
Deletion	Chr3	18448001	18493000	44999	3
Deletion	Chr7	18476001	18487000	10999	4
Deletion	Chr1	18632001	18654000	21999	OsKitaake01g186800
Deletion	Chr7	18663001	18676000	12999
Deletion	Chr8	18685001	18708000	22999	2
Deletion	Chr2	18689001	18709000	19999	OsKitaake02g184000
Deletion	Chr7	18701001	18723000	21999	2
Deletion	Chr5	18714001	18736000	21999	OsKitaake05g146000
Deletion	Chr1	18722001	18746000	23999	3
Deletion	Chr11	18761001	18782000	20999	4
Deletion	Chr12	18813001	18831000	17999
Deletion	Chr12	18879001	18968000	88999	6
Deletion	Chr11	18899001	18925000	25999	3
Deletion	Chr4	18930001	18946000	15999	4
Deletion	Chr12	19092001	19120000	27999
Deletion	Chr10	19199001	19255000	55999	5
Deletion	Chr8	19235001	19271000	35999
Deletion	Chr1	19289001	19324000	34999	3
Deletion	Chr11	19294001	19312000	17999	OsKitaake11g149900
Deletion	Chr11	19385357	19385376	19
Deletion	Chr3	19418001	19466000	47999
Deletion	Chr2	19458001	19470000	11999	OsKitaake02g190650
Deletion	Chr11	19490001	19512000	21999
Deletion	Chr1	19491001	19525000	33999	OsKitaake01g194700
Deletion	Chr1	19656001	19681000	24999	7
Deletion	Chr8	19667001	19711000	43999	3
Deletion	Chr2	19686001	19706000	19999	2
Deletion	Chr1	19777001	19807000	29999	2
Deletion	Chr5	19831001	19855000	23999	5
Deletion	Chr12	19849001	19869000	19999	OsKitaake12g148200
Deletion	Chr2	19919001	19956000	36999	OsKitaake02g194300
Deletion	Chr1	19948001	19964000	15999
Deletion	Chr1	20017001	20052000	34999
Deletion	Chr9	20022001	20046000	23999	2
Deletion	Chr10	20052001	20122000	69999	8
Deletion	Chr2	20067196	20067199	3
Deletion	Chr3	20071001	20081000	9999	OsKitaake03g230201
Deletion	Chr2	20084989	20084991	2
Deletion	Chr2	20211001	20253000	41999	3
Deletion	Chr5	20443001	20469000	25999	OsKitaake05g162800
Deletion	Chr1	20539001	20568000	28999	3
Deletion	Chr3	20573001	20613000	39999
Deletion	Chr6	20592001	20614000	21999	OsKitaake06g184500
Deletion	Chr3	20670001	20682000	11999
Deletion	Chr9	20695001	20749000	53999	7
Deletion	Chr3	20744001	20783000	38999	OsKitaake03g232000
Deletion	Chr1	20753001	20774000	20999
Deletion	Chr2	20802001	20859000	56999	8
Deletion	Chr1	20829001	20915000	85999	6
Deletion	Chr6	20848001	20882000	33999	4
Deletion	Chr8	20933001	20955000	21999	3
Deletion	Chr1	20966001	20984000	17999	2
Deletion	Chr11	21052001	21072000	19999	4
Deletion	Chr7	21058001	21078000	19999	4
Deletion	Chr1	21149001	21181000	31999	OsKitaake01g206900
Deletion	Chr3	21206001	21252000	45999	2
Deletion	Chr11	21224001	21251000	26999	OsKitaake11g168200
Deletion	Chr12	21250001	21279000	28999
Deletion	Chr9	21314001	21325000	10999	OsKitaake09g184200
Deletion	Chr7	21454001	21474000	19999	2
Deletion	Chr2	21621001	21642000	20999
Deletion	Chr1	21724001	21754000	29999	4
Deletion	Chr6	21749001	21772000	22999
Deletion	Chr6	21840001	21869000	28999	OsKitaake06g192500
Deletion	Chr3	21848001	21869000	20999	2
Deletion	Chr5	21900001	22004000	103999	12
Deletion	Chr7	21935001	21958000	22999	2
Deletion	Chr4	22230001	22248000	17999	OsKitaake04g129900
Deletion	Chr9	22276001	22316000	39999	4
Deletion	Chr12	22346001	22358000	11999
Deletion	Chr12	22372001	22388000	15999
Deletion	Chr5	22516001	22541000	24999	5
Deletion	Chr3	22533001	22548000	14999	2
Deletion	Chr2	22545001	22580000	34999	5
Deletion	Chr7	22591001	22675000	83999	9
Deletion	Chr3	22594001	22614000	19999
Deletion	Chr1	22683001	22711000	27999	3
Deletion	Chr4	22790001	22809000	18999	4
Deletion	Chr12	22854001	22872000	17999	2
Deletion	Chr6	22900001	22917000	16999	OsKitaake06g202500
Deletion	Chr3	23015001	23048000	32999	4
Deletion	Chr11	23026001	23066000	39999	2
Deletion	Chr5	23047001	23075000	27999	2
Deletion	Chr4	23132001	23149000	16999
Deletion	Chr1	23246001	23271000	24999	2
Deletion	Chr2	23404001	23433000	28999	4
Deletion	Chr6	23509001	23530000	20999	3
Deletion	Chr6	23558001	23583000	24999	2
Deletion	Chr11	23579001	23596000	16999
Deletion	Chr5	23821001	23838000	16999	2
Deletion	Chr1	23823001	23838000	14999
Deletion	Chr11	23857001	23899000	41999	6
Deletion	Chr6	24009001	24029000	19999	OsKitaake06g213000
Deletion	Chr7	24018001	24035000	16999	OsKitaake07g212300
Deletion	Chr12	24114001	24134000	19999	2
Deletion	Chr2	24143001	24191000	47999	11
Deletion	Chr6	24238001	24266000	27999
Deletion	Chr8	24384001	24421000	36999	2
Deletion	Chr12	24476001	24490000	13999	2
Deletion	Chr3	24770001	24799000	28999
Deletion	Chr2	24942001	24964000	21999
Deletion	Chr6	25045001	25108000	62999	8
Deletion	Chr11	25070001	25163000	92999	10
Deletion	Chr3	25180001	25199000	18999	OsKitaake03g266600
Deletion	Chr3	25247001	25265000	17999	OsKitaake03g267000
Deletion	Chr11	25356001	25382000	25999	8
Deletion	Chr11	25417001	25464000	46999	7
Deletion	Chr2	25517001	25588000	70999	10
Deletion	Chr2	25606001	25624000	17999	6
Deletion	Chr12	25611001	25647000	35999	3
Deletion	Chr1	25698001	25709000	10999	3
Deletion	Chr2	25829001	25838000	8999
Deletion	Chr5	26330001	26384000	53999	7
Deletion	Chr11	26470001	26493000	22999
Deletion	Chr7	26513001	26566000	52999	8
Deletion	Chr7	26596001	26616000	19999	3
Deletion	Chr5	26603001	26626000	22999	7
Deletion	Chr4	26957001	26998000	40999	5
Deletion	Chr1	26995001	27022000	26999	6
Deletion	Chr11	27056001	27097000	40999	8
Deletion	Chr5	27094001	27124000	29999	7
Deletion	Chr11	27129001	27148000	18999	2
Deletion	Chr6	27241001	27261000	19999	OsKitaake06g245400
Deletion	Chr7	27329001	27405000	75999	3
Deletion	Chr6	27388001	27403000	14999	2
Deletion	Chr3	27468001	27485000	16999	2
Deletion	Chr2	27542001	27572000	29999	3
Deletion	Chr7	27557001	27581000	23999	6
Deletion	Chr2	27630001	27655000	24999
Deletion	Chr7	27720001	27743000	22999	OsKitaake07g258800
Deletion	Chr11	28338001	28391000	52999
Deletion	Chr4	28357712	28357713	1
Deletion	Chr6	28435001	28454000	18999	2
Deletion	Chr2	28653001	28682000	28999	4
Deletion	Chr1	28877001	28894000	16999	5
Deletion	Chr4	28880001	28903000	22999	4
Deletion	Chr7	29078001	29095000	16999	4
Deletion	Chr3	29135001	29163000	27999	6
Deletion	Chr11	29324001	29356000	31999
Deletion	Chr5	29400001	29414000	13999
Deletion	Chr5	29466001	29491000	24999
Deletion	Chr1	29508001	29520000	11999	2
Deletion	Chr4	29521001	29549000	27999	OsKitaake04g226500
Deletion	Chr2	29711001	29738000	26999	7
Deletion	Chr5	29714001	29737000	22999
Deletion	Chr3	29809001	29836000	26999	3
Deletion	Chr2	29811001	29841000	29999	3
Deletion	Chr1	30590001	30607000	16999	2
Deletion	Chr1	30827001	30848000	20999	4
Deletion	Chr6	31032001	31045000	12999
Deletion	Chr3	31261001	31323000	61999	9
Deletion	Chr2	31946001	31963000	16999	3
Deletion	Chr2	32094001	32127000	32999	2
Deletion	Chr3	32125001	32149000	23999	2
Deletion	Chr4	32874001	32888000	13999	2
Deletion	Chr1	32884001	32919000	34999	7
Deletion	Chr4	33101001	33130000	28999	6
Deletion	Chr1	33290001	33337000	46999	10
Deletion	Chr3	33496001	33517000	20999	OsKitaake03g358900
Deletion	Chr1	33683001	33701000	17999	6
Deletion	Chr4	34142001	34164000	21999
Deletion	Chr2	34244001	34264000	19999	OsKitaake02g356000
Deletion	Chr2	34559001	34597000	37999	5
Deletion	Chr4	35365001	35421000	55999	10
Deletion	Chr2	35527001	35564000	36999	6
Deletion	Chr3	35701001	35723000	21999	3
Deletion	Chr3	35830001	35869000	38999	10
Deletion	Chr4	35860001	35876000	15999	OsKitaake04g307300
Deletion	Chr3	36024001	36044000	19999	4
Deletion	Chr1	36578001	36598000	19999	2
Deletion	Chr1	36854001	36882000	27999	7
Deletion	Chr1	37751001	37786000	34999	5
Deletion	Chr1	38101001	38143000	41999	6
Deletion	Chr1	40404001	40431000	26999	4
Deletion	Chr1	41390001	41411000	20999	2
Deletion	Chr1	42193001	42230000	36999	10
Deletion	Chr1	43334008	43334021	13
Deletion	Chr1	43336001	43355000	18999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13893865	14116420
Inversion	Chr10	19641229	20121688	OsKitaake10g145100
Inversion	Chr4	20562027	20708611	OsKitaake04g112100
Inversion	Chr4	20562041	20708614	OsKitaake04g112100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes