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| Mutant Information |
|---|
| Mutant Name | FN3095-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3095-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8931932 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 13176627 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17327326 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 24263328 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g233700 |
| SBS | Chr1 | 24643713 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32985465 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 1022211 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4742888 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 5481935 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36264107 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g383500 |
| SBS | Chr3 | 23274895 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25980243 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 10093543 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30583933 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34997322 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12208052 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22567997 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16372000 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 464769 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 465195 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 6080723 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g065400 |
| SBS | Chr8 | 14305578 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18868595 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 656966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 7373826 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11204787 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 857607 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14035186 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 10634204 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22476135 | C-T | Hetero | INTRON |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 5018013 | 5018018 | 5 | |
| Deletion | Chr10 | 11954927 | 11954929 | 2 | |
| Deletion | Chr9 | 12788721 | 12788722 | 1 | |
| Deletion | Chr4 | 14628765 | 14628766 | 1 | |
| Deletion | Chr1 | 14706584 | 14706592 | 8 | |
| Deletion | Chr1 | 15607270 | 15607271 | 1 | |
| Deletion | Chr1 | 15936860 | 15936886 | 26 | |
| Deletion | Chr2 | 16381933 | 16381943 | 10 | |
| Deletion | Chr11 | 16543001 | 16782000 | 238999 | 12 |
| Deletion | Chr7 | 19470011 | 19470013 | 2 | |
| Deletion | Chr8 | 21456040 | 21456054 | 14 | |
| Deletion | Chr9 | 22613655 | 22613663 | 8 | OsKitaake09g207500 |
| Deletion | Chr12 | 22821655 | 22821660 | 5 | |
| Deletion | Chr10 | 23552772 | 23552781 | 9 | |
| Deletion | Chr2 | 27159198 | 27159207 | 9 | OsKitaake02g272700 |
| Deletion | Chr1 | 27603533 | 27603534 | 1 | |
| Deletion | Chr2 | 31912019 | 31912027 | 8 | OsKitaake02g325400 |
| Deletion | Chr4 | 32961799 | 32961804 | 5 | |
| Deletion | Chr4 | 34572022 | 34572037 | 15 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 24761923 | 24761926 | 2 | |
| Insertion | Chr1 | 25051866 | 25051869 | 2 | |
| Insertion | Chr3 | 16285087 | 16285090 | 2 | |
| Insertion | Chr7 | 29598883 | 29598887 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 10860962 | Chr3 | 24334504 | |
| Translocation | Chr9 | 10861057 | Chr3 | 24334504 |