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Mutant Information

Mutant Name	FN3105-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3105-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3535584 T-C Hetero UTR_3_PRIME
SBS Chr1 12131985 C-T Hetero INTERGENIC
SBS Chr1 12901982 T-A Hetero INTERGENIC
SBS Chr1 12928092 G-T Hetero INTERGENIC
SBS Chr1 12928094 C-T Hetero INTERGENIC
SBS Chr1 22477706 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g214800
SBS Chr1 31239699 C-T Homo INTERGENIC
SBS Chr1 34524736 G-A Homo SYNONYMOUS_CODING
SBS Chr1 38970607 A-G Hetero INTERGENIC
SBS Chr1 40288702 G-A Hetero INTERGENIC
SBS Chr2 1321229 G-A Hetero INTERGENIC
SBS Chr2 3926564 C-T Hetero INTERGENIC
SBS Chr2 31061724 A-C Hetero INTERGENIC
SBS Chr2 32914037 T-A Hetero INTERGENIC
SBS Chr3 14422940 T-A Hetero INTRON
SBS Chr3 24963043 C-T Hetero UTR_3_PRIME
SBS Chr3 32147983 G-A Hetero INTERGENIC
SBS Chr3 33085017 A-T Hetero INTERGENIC
SBS Chr3 34076993 A-T Hetero INTERGENIC
SBS Chr4 4544406 A-C Hetero INTERGENIC
SBS Chr4 5658764 A-T Hetero INTERGENIC
SBS Chr4 11188702 A-T Hetero INTERGENIC
SBS Chr4 29186827 G-C Homo INTERGENIC
SBS Chr4 33513235 C-T Hetero INTERGENIC
SBS Chr5 7544731 G-C Hetero INTRON
SBS Chr6 5026237 C-T Hetero INTERGENIC
SBS Chr6 15303775 A-G Hetero INTERGENIC
SBS Chr6 23032768 G-A Homo INTERGENIC
SBS Chr6 26909487 A-G Homo INTERGENIC
SBS Chr6 29246320 G-A Homo SYNONYMOUS_CODING
SBS Chr7 26892792 C-T Hetero INTRON
SBS Chr8 7801001 T-A Hetero INTERGENIC
SBS Chr8 13304427 G-A Hetero INTERGENIC
SBS Chr8 24895041 A-C Homo INTERGENIC
SBS Chr9 21175755 G-A Hetero UTR_5_PRIME
SBS Chr10 619956 A-G Homo INTERGENIC
SBS Chr10 759869 A-G Homo INTERGENIC
SBS Chr10 759880 A-G Homo INTERGENIC
SBS Chr10 16200077 T-A Homo INTERGENIC
SBS Chr11 10606907 G-A Homo INTERGENIC
SBS Chr11 13171015 G-A Hetero INTERGENIC
SBS Chr12 2267064 C-T Hetero INTERGENIC
SBS Chr12 14168812 T-C Homo INTERGENIC
SBS Chr12 26418968 G-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 789709 789717 8
Deletion Chr11 1377001 1497000 119999 23
Deletion Chr6 2961132 2961134 2
Deletion Chr7 11996537 11997045 508
Deletion Chr3 12875001 12908000 32999 3
Deletion Chr9 17695077 17695082 5
Deletion Chr11 19196547 19196549 2
Deletion Chr2 19208063 19208064 1
Deletion Chr12 21101798 21101805 7
Deletion Chr8 22730267 22730268 1
Deletion Chr2 30271001 30287000 15999 2
Deletion Chr2 34964170 34964181 11
Deletion Chr1 39436394 39436396 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21400340 21400344 3
Insertion Chr5 5555852 5555854 1
Insertion Chr6 1714718 1714723 4
Insertion Chr8 4396401 4396404 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 1269072 1520256 OsKitaake02g019400
Inversion Chr2 1269081 1520262 OsKitaake02g019400
Inversion Chr2 9015303 9016124 OsKitaake02g112900
Inversion Chr6 23900658 24006233 OsKitaake06g211500
Inversion Chr7 26521058 27338015 OsKitaake07g245300
Inversion Chr7 26524326 27354497
Inversion Chr2 30271485 30542157 OsKitaake02g311800

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 9015812 Chr1 8932762 OsKitaake01g111700
Translocation Chr2 9037065 Chr1 8933420 OsKitaake01g111700
Translocation Chr3 12860402 Chr1 16224172
Translocation Chr2 12930691 Chr1 39681288 OsKitaake02g144500
Translocation Chr6 22940890 Chr1 16224181 OsKitaake06g202700
Translocation Chr6 22941543 Chr3 12869327 OsKitaake06g202700
Translocation Chr6 23146169 Chr2 9016123 OsKitaake06g203700
Translocation Chr6 23146750 Chr2 9015813 OsKitaake06g203700
Translocation Chr6 23900661 Chr2 34155799 OsKitaake06g211500
Translocation Chr6 24006234 Chr2 34144580

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3535584	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	12131985	C-T	Hetero	INTERGENIC
SBS	Chr1	12901982	T-A	Hetero	INTERGENIC
SBS	Chr1	12928092	G-T	Hetero	INTERGENIC
SBS	Chr1	12928094	C-T	Hetero	INTERGENIC
SBS	Chr1	22477706	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g214800
SBS	Chr1	31239699	C-T	Homo	INTERGENIC
SBS	Chr1	34524736	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	38970607	A-G	Hetero	INTERGENIC
SBS	Chr1	40288702	G-A	Hetero	INTERGENIC
SBS	Chr2	1321229	G-A	Hetero	INTERGENIC
SBS	Chr2	3926564	C-T	Hetero	INTERGENIC
SBS	Chr2	31061724	A-C	Hetero	INTERGENIC
SBS	Chr2	32914037	T-A	Hetero	INTERGENIC
SBS	Chr3	14422940	T-A	Hetero	INTRON
SBS	Chr3	24963043	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	32147983	G-A	Hetero	INTERGENIC
SBS	Chr3	33085017	A-T	Hetero	INTERGENIC
SBS	Chr3	34076993	A-T	Hetero	INTERGENIC
SBS	Chr4	4544406	A-C	Hetero	INTERGENIC
SBS	Chr4	5658764	A-T	Hetero	INTERGENIC
SBS	Chr4	11188702	A-T	Hetero	INTERGENIC
SBS	Chr4	29186827	G-C	Homo	INTERGENIC
SBS	Chr4	33513235	C-T	Hetero	INTERGENIC
SBS	Chr5	7544731	G-C	Hetero	INTRON
SBS	Chr6	5026237	C-T	Hetero	INTERGENIC
SBS	Chr6	15303775	A-G	Hetero	INTERGENIC
SBS	Chr6	23032768	G-A	Homo	INTERGENIC
SBS	Chr6	26909487	A-G	Homo	INTERGENIC
SBS	Chr6	29246320	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	26892792	C-T	Hetero	INTRON
SBS	Chr8	7801001	T-A	Hetero	INTERGENIC
SBS	Chr8	13304427	G-A	Hetero	INTERGENIC
SBS	Chr8	24895041	A-C	Homo	INTERGENIC
SBS	Chr9	21175755	G-A	Hetero	UTR_5_PRIME
SBS	Chr10	619956	A-G	Homo	INTERGENIC
SBS	Chr10	759869	A-G	Homo	INTERGENIC
SBS	Chr10	759880	A-G	Homo	INTERGENIC
SBS	Chr10	16200077	T-A	Homo	INTERGENIC
SBS	Chr11	10606907	G-A	Homo	INTERGENIC
SBS	Chr11	13171015	G-A	Hetero	INTERGENIC
SBS	Chr12	2267064	C-T	Hetero	INTERGENIC
SBS	Chr12	14168812	T-C	Homo	INTERGENIC
SBS	Chr12	26418968	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	789709	789717	8
Deletion	Chr11	1377001	1497000	119999	23
Deletion	Chr6	2961132	2961134	2
Deletion	Chr7	11996537	11997045	508
Deletion	Chr3	12875001	12908000	32999	3
Deletion	Chr9	17695077	17695082	5
Deletion	Chr11	19196547	19196549	2
Deletion	Chr2	19208063	19208064	1
Deletion	Chr12	21101798	21101805	7
Deletion	Chr8	22730267	22730268	1
Deletion	Chr2	30271001	30287000	15999	2
Deletion	Chr2	34964170	34964181	11
Deletion	Chr1	39436394	39436396	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1269072	1520256	OsKitaake02g019400
Inversion	Chr2	1269081	1520262	OsKitaake02g019400
Inversion	Chr2	9015303	9016124	OsKitaake02g112900
Inversion	Chr6	23900658	24006233	OsKitaake06g211500
Inversion	Chr7	26521058	27338015	OsKitaake07g245300
Inversion	Chr7	26524326	27354497
Inversion	Chr2	30271485	30542157	OsKitaake02g311800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes