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Mutant Information

Mutant Name	FN3110-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3110-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1127504 G-C Homo SYNONYMOUS_CODING
SBS Chr1 14253900 G-A Hetero INTERGENIC
SBS Chr1 16727673 T-G Hetero INTERGENIC
SBS Chr1 16738893 T-A Hetero INTERGENIC
SBS Chr1 16738894 C-A Hetero INTERGENIC
SBS Chr1 25219593 T-A Hetero INTERGENIC
SBS Chr2 2121679 C-T Homo INTERGENIC
SBS Chr2 19275340 G-T Hetero INTERGENIC
SBS Chr2 20821254 G-A Homo INTERGENIC
SBS Chr2 20839712 G-A Homo INTERGENIC
SBS Chr2 28001477 C-T Hetero INTERGENIC
SBS Chr3 24812151 G-A Hetero INTERGENIC
SBS Chr3 33673366 T-A Hetero INTRON
SBS Chr3 33689644 A-T Hetero INTERGENIC
SBS Chr4 20522035 C-A Hetero SYNONYMOUS_CODING
SBS Chr4 34365035 G-A Hetero INTERGENIC
SBS Chr4 35379838 G-T Hetero INTERGENIC
SBS Chr4 36472692 T-C Hetero INTERGENIC
SBS Chr5 5479108 T-A Homo INTERGENIC
SBS Chr5 6102080 C-A Homo INTERGENIC
SBS Chr5 7947643 C-T Hetero INTERGENIC
SBS Chr5 25098340 T-C Homo INTERGENIC
SBS Chr5 27855700 C-T Hetero INTERGENIC
SBS Chr5 29005844 G-C Homo INTRON
SBS Chr6 1899291 G-A Homo INTERGENIC
SBS Chr6 7628514 A-G Hetero INTERGENIC
SBS Chr6 12108102 G-T Hetero INTERGENIC
SBS Chr9 9868304 C-T Hetero INTERGENIC
SBS Chr10 7687967 C-G Hetero INTERGENIC
SBS Chr10 11874979 A-T Hetero INTERGENIC
SBS Chr10 12125132 G-C Hetero INTERGENIC
SBS Chr11 3146249 T-C Homo INTERGENIC
SBS Chr11 6129001 C-T Hetero INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr11 11716709 T-A Hetero INTERGENIC
SBS Chr11 22705629 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g180000
SBS Chr12 5954306 C-G Homo INTERGENIC
SBS Chr12 7035876 G-C Hetero INTERGENIC
SBS Chr12 25106448 T-A Homo INTERGENIC

Deletions: 244

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3001 15000 11999
Deletion Chr9 340001 373000 32999 OsKitaake09g002550
Deletion Chr9 548001 581000 32999
Deletion Chr10 594001 608000 13999 OsKitaake10g004300
Deletion Chr9 719001 737000 17999
Deletion Chr12 798001 821000 22999 2
Deletion Chr4 800001 821000 20999 2
Deletion Chr11 969001 991000 21999 3
Deletion Chr9 1036001 1064000 27999
Deletion Chr11 1144001 1172000 27999 2
Deletion Chr3 1438643 1438646 3
Deletion Chr4 1441001 1458000 16999 OsKitaake04g010500
Deletion Chr7 1637001 1670000 32999 10
Deletion Chr8 2038001 2055000 16999 3
Deletion Chr4 2075001 2106000 30999
Deletion Chr8 2250001 2264000 13999 OsKitaake08g026800
Deletion Chr4 2380001 2399000 18999
Deletion Chr12 2595001 2613000 17999 2
Deletion Chr12 2881001 2899000 17999
Deletion Chr11 3030001 3044000 13999 OsKitaake11g042800
Deletion Chr5 3206001 3230000 23999 OsKitaake05g038400
Deletion Chr2 3383001 3398000 14999 OsKitaake02g048900
Deletion Chr12 3555001 3568000 12999
Deletion Chr6 3778001 3819000 40999 2
Deletion Chr1 3837001 3872000 34999 OsKitaake01g052000
Deletion Chr6 4115001 4142000 26999 2
Deletion Chr12 4219001 4247000 27999 OsKitaake12g057700
Deletion Chr6 4309001 4333000 23999 OsKitaake06g059600
Deletion Chr8 4563001 4586000 22999 4
Deletion Chr7 4796001 4814000 17999 2
Deletion Chr5 4799001 4814000 14999
Deletion Chr11 4885001 4908000 22999 2
Deletion Chr10 4937001 4983000 45999 2
Deletion Chr7 4956001 4995000 38999 3
Deletion Chr9 5381001 5398000 16999 2
Deletion Chr5 5403589 5403611 22
Deletion Chr11 5666001 5680000 13999 4
Deletion Chr11 5781001 5797000 15999 OsKitaake11g070900
Deletion Chr10 5832590 5832601 11
Deletion Chr5 5883001 5906000 22999
Deletion Chr11 5978001 6001000 22999 4
Deletion Chr3 6081001 6103000 21999 2
Deletion Chr4 6091001 6146000 54999 2
Deletion Chr4 6205001 6223000 17999
Deletion Chr2 6441001 6460000 18999
Deletion Chr12 6477001 6495000 17999 OsKitaake12g074500
Deletion Chr1 6548001 6562000 13999 OsKitaake01g082700
Deletion Chr8 6729001 6759000 29999 OsKitaake08g069707
Deletion Chr4 6732001 6764000 31999 3
Deletion Chr5 6880001 6918000 37999 4
Deletion Chr10 7059001 7072000 12999
Deletion Chr4 7267001 7296000 28999
Deletion Chr11 7604405 7604407 2
Deletion Chr12 7638001 7657000 18999 OsKitaake12g083000
Deletion Chr10 7719001 7766000 46999 2
Deletion Chr9 7796001 7818000 21999
Deletion Chr8 7846001 7910000 63999 OsKitaake08g072300
Deletion Chr4 7849001 7864000 14999
Deletion Chr2 7890001 7902000 11999
Deletion Chr2 7928001 7943000 14999 2
Deletion Chr10 7934001 7955000 20999 6
Deletion Chr11 7994001 8017000 22999
Deletion Chr10 8009001 8019000 9999 OsKitaake10g050500
Deletion Chr12 8028001 8044000 15999 OsKitaake12g084700
Deletion Chr7 8084001 8097000 12999 OsKitaake07g088800
Deletion Chr11 8117001 8140000 22999 OsKitaake11g089600
Deletion Chr5 8217001 8235000 17999
Deletion Chr4 8332001 8347000 14999
Deletion Chr7 8503001 8533000 29999 2
Deletion Chr8 8591001 8603000 11999
Deletion Chr10 8630001 8646000 15999 OsKitaake10g053100
Deletion Chr4 8701001 8712000 10999 4
Deletion Chr11 8753001 8781000 27999 OsKitaake11g094700
Deletion Chr5 9043473 9043481 8
Deletion Chr7 9078001 9092000 13999
Deletion Chr7 9298001 9312000 13999
Deletion Chr5 9386001 9407000 20999
Deletion Chr12 9466001 9482000 15999
Deletion Chr8 9656001 9670000 13999
Deletion Chr12 9725001 9760000 34999 OsKitaake12g093700
Deletion Chr8 9769001 9784000 14999
Deletion Chr2 9863001 9883000 19999
Deletion Chr12 9938001 9960000 21999
Deletion Chr11 10022001 10046000 23999 4
Deletion Chr5 10124001 10159000 34999
Deletion Chr5 10195001 10209000 13999
Deletion Chr2 10196492 10196496 4
Deletion Chr4 10197001 10216000 18999
Deletion Chr1 10214001 10241000 26999 2
Deletion Chr8 10400001 10415000 14999
Deletion Chr9 10540001 10552000 11999 OsKitaake09g065900
Deletion Chr12 10557001 10571000 13999 2
Deletion Chr11 10564001 10602000 37999 3
Deletion Chr9 10587001 10633000 45999 3
Deletion Chr11 10619001 10664000 44999 5
Deletion Chr1 10734001 10750000 15999 OsKitaake01g133000
Deletion Chr11 10873001 10888000 14999 OsKitaake11g105800
Deletion Chr8 11157001 11179000 21999 OsKitaake08g099600
Deletion Chr8 11193001 11209000 15999 OsKitaake08g099700
Deletion Chr4 11273001 11298000 24999
Deletion Chr2 11345001 11377000 31999 OsKitaake02g131900
Deletion Chr11 11351912 11351915 3
Deletion Chr11 11353048 11353057 9
Deletion Chr12 11376001 11403000 26999
Deletion Chr4 11416001 11463000 46999 OsKitaake04g056800
Deletion Chr12 11442001 11461000 18999
Deletion Chr4 11537001 11565000 27999
Deletion Chr6 11567001 11591000 23999
Deletion Chr3 11674001 11690000 15999 3
Deletion Chr5 11728726 11728740 14
Deletion Chr11 11741001 11757000 15999 OsKitaake11g110100
Deletion Chr8 11860001 11877000 16999 OsKitaake08g104200
Deletion Chr12 11897001 11911000 13999 2
Deletion Chr7 11927001 11963000 35999
Deletion Chr7 12024001 12037000 12999
Deletion Chr6 12253001 12265000 11999
Deletion Chr6 12372001 12406000 33999 2
Deletion Chr5 12541001 12557000 15999
Deletion Chr5 12636001 12693000 56999 OsKitaake05g098900
Deletion Chr9 12968001 12984000 15999
Deletion Chr9 12995001 13021000 25999 OsKitaake09g086300
Deletion Chr5 13047001 13080000 32999 6
Deletion Chr6 13506001 13518000 11999
Deletion Chr12 13808001 13829000 20999 OsKitaake12g113400
Deletion Chr2 13870001 13884000 13999 3
Deletion Chr6 13884001 13901000 16999 4
Deletion Chr11 13985001 14005000 19999
Deletion Chr8 14030133 14030140 7
Deletion Chr4 14100001 14137000 36999 3
Deletion Chr7 14175001 14195000 19999 OsKitaake07g122500
Deletion Chr5 14260001 14277000 16999
Deletion Chr10 14369001 14386000 16999
Deletion Chr9 14532782 14532784 2
Deletion Chr9 14811001 14828000 16999 OsKitaake09g101500
Deletion Chr11 14831001 14881000 49999 2
Deletion Chr4 14870001 14897000 26999 2
Deletion Chr8 15022001 15038000 15999 OsKitaake08g117500
Deletion Chr4 15201001 15219000 17999
Deletion Chr12 15533001 15563000 29999 OsKitaake12g120600
Deletion Chr3 15544001 15562000 17999
Deletion Chr12 15672001 15693000 20999 OsKitaake12g121300
Deletion Chr11 15986001 16011000 24999 3
Deletion Chr12 16008001 16061000 52999 3
Deletion Chr2 16066001 16088000 21999 OsKitaake02g166300
Deletion Chr6 16104001 16121000 16999 OsKitaake06g154900
Deletion Chr12 16132001 16161000 28999
Deletion Chr1 16563408 16563411 3
Deletion Chr12 16566001 16594000 27999 OsKitaake12g124900
Deletion Chr5 16666001 16693000 26999 2
Deletion Chr11 16841001 16879000 37999 2
Deletion Chr2 17088001 17115000 26999 OsKitaake02g172800
Deletion Chr7 17191001 17219000 27999
Deletion Chr8 17211001 17256000 44999 OsKitaake08g130800
Deletion Chr3 17298001 17316000 17999
Deletion Chr10 17321001 17339000 17999
Deletion Chr6 17729001 17748000 18999 OsKitaake06g163600
Deletion Chr2 17833001 17854000 20999
Deletion Chr8 18074001 18119000 44999 2
Deletion Chr6 18202001 18217000 14999
Deletion Chr12 18204001 18225000 20999
Deletion Chr10 18566001 18597000 30999 OsKitaake10g132100
Deletion Chr2 18696001 18706000 9999 OsKitaake02g184000
Deletion Chr5 18712001 18737000 24999 OsKitaake05g146000
Deletion Chr7 18895001 18902000 6999
Deletion Chr12 18928001 18967000 38999 3
Deletion Chr4 18930001 18949000 18999 4
Deletion Chr7 19189276 19189278 2
Deletion Chr8 19248001 19264000 15999
Deletion Chr3 19419001 19470000 50999
Deletion Chr8 19436001 19459000 22999 4
Deletion Chr1 19495001 19511000 15999
Deletion Chr6 19587001 19602000 14999 OsKitaake06g175500
Deletion Chr5 19603001 19623000 19999
Deletion Chr12 19638028 19638034 6
Deletion Chr4 19657001 19667000 9999 OsKitaake04g102200
Deletion Chr6 19692001 19715000 22999 2
Deletion Chr1 19780001 19805000 24999 2
Deletion Chr1 20092001 20121000 28999
Deletion Chr9 20159365 20159368 3
Deletion Chr2 20201001 20225000 23999
Deletion Chr8 20377001 20394000 16999 OsKitaake08g150900
Deletion Chr7 20389001 20401000 11999
Deletion Chr1 20541001 20581000 39999 OsKitaake01g201000
Deletion Chr7 20633001 20644000 10999
Deletion Chr12 20641001 20662000 20999 2
Deletion Chr3 20866001 20876000 9999 OsKitaake03g232500
Deletion Chr1 21152001 21177000 24999 OsKitaake01g206900
Deletion Chr5 21206620 21206621 1
Deletion Chr8 21274001 21286000 11999
Deletion Chr11 21310001 21323000 12999
Deletion Chr9 21468542 21468549 7
Deletion Chr2 21612001 21646000 33999 OsKitaake02g209400
Deletion Chr11 21665001 21681000 15999 3
Deletion Chr6 21840001 21866000 25999 OsKitaake06g192500
Deletion Chr8 21931001 21958000 26999 2
Deletion Chr7 21939001 21953000 13999 OsKitaake07g183900
Deletion Chr9 22288001 22320000 31999 3
Deletion Chr2 22555001 22578000 22999 2
Deletion Chr4 22926105 22926115 10
Deletion Chr3 23062606 23062615 9
Deletion Chr8 23535001 23552000 16999
Deletion Chr11 23579001 23598000 18999
Deletion Chr8 23717001 23739000 21999
Deletion Chr5 23823001 23838000 14999 2
Deletion Chr1 24224001 24246000 21999 3
Deletion Chr6 24243001 24271000 27999 2
Deletion Chr8 24390001 24403000 12999
Deletion Chr3 24774001 24802000 27999
Deletion Chr2 24943001 24961000 17999
Deletion Chr11 25144001 25159000 14999 OsKitaake11g203050
Deletion Chr2 25522001 25591000 68999 11
Deletion Chr8 25570001 25600000 29999 6
Deletion Chr2 25606001 25622000 15999 5
Deletion Chr12 25614001 25630000 15999 2
Deletion Chr3 26375001 26396000 20999 2
Deletion Chr3 26635001 26652000 16999
Deletion Chr7 26846001 26863000 16999 OsKitaake07g250200
Deletion Chr12 26850031 26850037 6
Deletion Chr4 27250001 27266000 15999
Deletion Chr11 27286001 27304000 17999 OsKitaake11g223300
Deletion Chr7 27327001 27343000 15999
Deletion Chr8 27331001 27368000 36999 5
Deletion Chr4 27333001 27346000 12999 2
Deletion Chr2 27543001 27565000 21999 3
Deletion Chr11 27596001 27617000 20999
Deletion Chr8 28148001 28164000 15999 4
Deletion Chr6 28438001 28456000 17999 2
Deletion Chr5 28440112 28440113 1
Deletion Chr2 28656001 28675000 18999 2
Deletion Chr7 29557671 29557683 12
Deletion Chr2 29820001 29836000 15999 2
Deletion Chr3 30040016 30040018 2
Deletion Chr4 30132001 30145000 12999 OsKitaake04g231400
Deletion Chr4 30465001 30473000 7999
Deletion Chr4 30988001 31004000 15999
Deletion Chr4 32186001 32203000 16999 3
Deletion Chr1 33686001 33699000 12999 5
Deletion Chr3 33705848 33705853 5
Deletion Chr4 34145001 34168000 22999
Deletion Chr3 35402001 35417000 14999 3
Deletion Chr1 38568568 38568569 1
Deletion Chr1 38645132 38645133 1
Deletion Chr1 40410001 40428000 17999 3
Deletion Chr1 42733001 42755000 21999 OsKitaake01g471100

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7947363 7947366 2
Insertion Chr8 13559579 13559582 2
Insertion Chr3 30636054 30636057 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11979154 12391506
Inversion Chr1 11979163 12391512

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1127504	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr1	14253900	G-A	Hetero	INTERGENIC
SBS	Chr1	16727673	T-G	Hetero	INTERGENIC
SBS	Chr1	16738893	T-A	Hetero	INTERGENIC
SBS	Chr1	16738894	C-A	Hetero	INTERGENIC
SBS	Chr1	25219593	T-A	Hetero	INTERGENIC
SBS	Chr2	2121679	C-T	Homo	INTERGENIC
SBS	Chr2	19275340	G-T	Hetero	INTERGENIC
SBS	Chr2	20821254	G-A	Homo	INTERGENIC
SBS	Chr2	20839712	G-A	Homo	INTERGENIC
SBS	Chr2	28001477	C-T	Hetero	INTERGENIC
SBS	Chr3	24812151	G-A	Hetero	INTERGENIC
SBS	Chr3	33673366	T-A	Hetero	INTRON
SBS	Chr3	33689644	A-T	Hetero	INTERGENIC
SBS	Chr4	20522035	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	34365035	G-A	Hetero	INTERGENIC
SBS	Chr4	35379838	G-T	Hetero	INTERGENIC
SBS	Chr4	36472692	T-C	Hetero	INTERGENIC
SBS	Chr5	5479108	T-A	Homo	INTERGENIC
SBS	Chr5	6102080	C-A	Homo	INTERGENIC
SBS	Chr5	7947643	C-T	Hetero	INTERGENIC
SBS	Chr5	25098340	T-C	Homo	INTERGENIC
SBS	Chr5	27855700	C-T	Hetero	INTERGENIC
SBS	Chr5	29005844	G-C	Homo	INTRON
SBS	Chr6	1899291	G-A	Homo	INTERGENIC
SBS	Chr6	7628514	A-G	Hetero	INTERGENIC
SBS	Chr6	12108102	G-T	Hetero	INTERGENIC
SBS	Chr9	9868304	C-T	Hetero	INTERGENIC
SBS	Chr10	7687967	C-G	Hetero	INTERGENIC
SBS	Chr10	11874979	A-T	Hetero	INTERGENIC
SBS	Chr10	12125132	G-C	Hetero	INTERGENIC
SBS	Chr11	3146249	T-C	Homo	INTERGENIC
SBS	Chr11	6129001	C-T	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr11	11716709	T-A	Hetero	INTERGENIC
SBS	Chr11	22705629	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g180000
SBS	Chr12	5954306	C-G	Homo	INTERGENIC
SBS	Chr12	7035876	G-C	Hetero	INTERGENIC
SBS	Chr12	25106448	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3001	15000	11999
Deletion	Chr9	340001	373000	32999	OsKitaake09g002550
Deletion	Chr9	548001	581000	32999
Deletion	Chr10	594001	608000	13999	OsKitaake10g004300
Deletion	Chr9	719001	737000	17999
Deletion	Chr12	798001	821000	22999	2
Deletion	Chr4	800001	821000	20999	2
Deletion	Chr11	969001	991000	21999	3
Deletion	Chr9	1036001	1064000	27999
Deletion	Chr11	1144001	1172000	27999	2
Deletion	Chr3	1438643	1438646	3
Deletion	Chr4	1441001	1458000	16999	OsKitaake04g010500
Deletion	Chr7	1637001	1670000	32999	10
Deletion	Chr8	2038001	2055000	16999	3
Deletion	Chr4	2075001	2106000	30999
Deletion	Chr8	2250001	2264000	13999	OsKitaake08g026800
Deletion	Chr4	2380001	2399000	18999
Deletion	Chr12	2595001	2613000	17999	2
Deletion	Chr12	2881001	2899000	17999
Deletion	Chr11	3030001	3044000	13999	OsKitaake11g042800
Deletion	Chr5	3206001	3230000	23999	OsKitaake05g038400
Deletion	Chr2	3383001	3398000	14999	OsKitaake02g048900
Deletion	Chr12	3555001	3568000	12999
Deletion	Chr6	3778001	3819000	40999	2
Deletion	Chr1	3837001	3872000	34999	OsKitaake01g052000
Deletion	Chr6	4115001	4142000	26999	2
Deletion	Chr12	4219001	4247000	27999	OsKitaake12g057700
Deletion	Chr6	4309001	4333000	23999	OsKitaake06g059600
Deletion	Chr8	4563001	4586000	22999	4
Deletion	Chr7	4796001	4814000	17999	2
Deletion	Chr5	4799001	4814000	14999
Deletion	Chr11	4885001	4908000	22999	2
Deletion	Chr10	4937001	4983000	45999	2
Deletion	Chr7	4956001	4995000	38999	3
Deletion	Chr9	5381001	5398000	16999	2
Deletion	Chr5	5403589	5403611	22
Deletion	Chr11	5666001	5680000	13999	4
Deletion	Chr11	5781001	5797000	15999	OsKitaake11g070900
Deletion	Chr10	5832590	5832601	11
Deletion	Chr5	5883001	5906000	22999
Deletion	Chr11	5978001	6001000	22999	4
Deletion	Chr3	6081001	6103000	21999	2
Deletion	Chr4	6091001	6146000	54999	2
Deletion	Chr4	6205001	6223000	17999
Deletion	Chr2	6441001	6460000	18999
Deletion	Chr12	6477001	6495000	17999	OsKitaake12g074500
Deletion	Chr1	6548001	6562000	13999	OsKitaake01g082700
Deletion	Chr8	6729001	6759000	29999	OsKitaake08g069707
Deletion	Chr4	6732001	6764000	31999	3
Deletion	Chr5	6880001	6918000	37999	4
Deletion	Chr10	7059001	7072000	12999
Deletion	Chr4	7267001	7296000	28999
Deletion	Chr11	7604405	7604407	2
Deletion	Chr12	7638001	7657000	18999	OsKitaake12g083000
Deletion	Chr10	7719001	7766000	46999	2
Deletion	Chr9	7796001	7818000	21999
Deletion	Chr8	7846001	7910000	63999	OsKitaake08g072300
Deletion	Chr4	7849001	7864000	14999
Deletion	Chr2	7890001	7902000	11999
Deletion	Chr2	7928001	7943000	14999	2
Deletion	Chr10	7934001	7955000	20999	6
Deletion	Chr11	7994001	8017000	22999
Deletion	Chr10	8009001	8019000	9999	OsKitaake10g050500
Deletion	Chr12	8028001	8044000	15999	OsKitaake12g084700
Deletion	Chr7	8084001	8097000	12999	OsKitaake07g088800
Deletion	Chr11	8117001	8140000	22999	OsKitaake11g089600
Deletion	Chr5	8217001	8235000	17999
Deletion	Chr4	8332001	8347000	14999
Deletion	Chr7	8503001	8533000	29999	2
Deletion	Chr8	8591001	8603000	11999
Deletion	Chr10	8630001	8646000	15999	OsKitaake10g053100
Deletion	Chr4	8701001	8712000	10999	4
Deletion	Chr11	8753001	8781000	27999	OsKitaake11g094700
Deletion	Chr5	9043473	9043481	8
Deletion	Chr7	9078001	9092000	13999
Deletion	Chr7	9298001	9312000	13999
Deletion	Chr5	9386001	9407000	20999
Deletion	Chr12	9466001	9482000	15999
Deletion	Chr8	9656001	9670000	13999
Deletion	Chr12	9725001	9760000	34999	OsKitaake12g093700
Deletion	Chr8	9769001	9784000	14999
Deletion	Chr2	9863001	9883000	19999
Deletion	Chr12	9938001	9960000	21999
Deletion	Chr11	10022001	10046000	23999	4
Deletion	Chr5	10124001	10159000	34999
Deletion	Chr5	10195001	10209000	13999
Deletion	Chr2	10196492	10196496	4
Deletion	Chr4	10197001	10216000	18999
Deletion	Chr1	10214001	10241000	26999	2
Deletion	Chr8	10400001	10415000	14999
Deletion	Chr9	10540001	10552000	11999	OsKitaake09g065900
Deletion	Chr12	10557001	10571000	13999	2
Deletion	Chr11	10564001	10602000	37999	3
Deletion	Chr9	10587001	10633000	45999	3
Deletion	Chr11	10619001	10664000	44999	5
Deletion	Chr1	10734001	10750000	15999	OsKitaake01g133000
Deletion	Chr11	10873001	10888000	14999	OsKitaake11g105800
Deletion	Chr8	11157001	11179000	21999	OsKitaake08g099600
Deletion	Chr8	11193001	11209000	15999	OsKitaake08g099700
Deletion	Chr4	11273001	11298000	24999
Deletion	Chr2	11345001	11377000	31999	OsKitaake02g131900
Deletion	Chr11	11351912	11351915	3
Deletion	Chr11	11353048	11353057	9
Deletion	Chr12	11376001	11403000	26999
Deletion	Chr4	11416001	11463000	46999	OsKitaake04g056800
Deletion	Chr12	11442001	11461000	18999
Deletion	Chr4	11537001	11565000	27999
Deletion	Chr6	11567001	11591000	23999
Deletion	Chr3	11674001	11690000	15999	3
Deletion	Chr5	11728726	11728740	14
Deletion	Chr11	11741001	11757000	15999	OsKitaake11g110100
Deletion	Chr8	11860001	11877000	16999	OsKitaake08g104200
Deletion	Chr12	11897001	11911000	13999	2
Deletion	Chr7	11927001	11963000	35999
Deletion	Chr7	12024001	12037000	12999
Deletion	Chr6	12253001	12265000	11999
Deletion	Chr6	12372001	12406000	33999	2
Deletion	Chr5	12541001	12557000	15999
Deletion	Chr5	12636001	12693000	56999	OsKitaake05g098900
Deletion	Chr9	12968001	12984000	15999
Deletion	Chr9	12995001	13021000	25999	OsKitaake09g086300
Deletion	Chr5	13047001	13080000	32999	6
Deletion	Chr6	13506001	13518000	11999
Deletion	Chr12	13808001	13829000	20999	OsKitaake12g113400
Deletion	Chr2	13870001	13884000	13999	3
Deletion	Chr6	13884001	13901000	16999	4
Deletion	Chr11	13985001	14005000	19999
Deletion	Chr8	14030133	14030140	7
Deletion	Chr4	14100001	14137000	36999	3
Deletion	Chr7	14175001	14195000	19999	OsKitaake07g122500
Deletion	Chr5	14260001	14277000	16999
Deletion	Chr10	14369001	14386000	16999
Deletion	Chr9	14532782	14532784	2
Deletion	Chr9	14811001	14828000	16999	OsKitaake09g101500
Deletion	Chr11	14831001	14881000	49999	2
Deletion	Chr4	14870001	14897000	26999	2
Deletion	Chr8	15022001	15038000	15999	OsKitaake08g117500
Deletion	Chr4	15201001	15219000	17999
Deletion	Chr12	15533001	15563000	29999	OsKitaake12g120600
Deletion	Chr3	15544001	15562000	17999
Deletion	Chr12	15672001	15693000	20999	OsKitaake12g121300
Deletion	Chr11	15986001	16011000	24999	3
Deletion	Chr12	16008001	16061000	52999	3
Deletion	Chr2	16066001	16088000	21999	OsKitaake02g166300
Deletion	Chr6	16104001	16121000	16999	OsKitaake06g154900
Deletion	Chr12	16132001	16161000	28999
Deletion	Chr1	16563408	16563411	3
Deletion	Chr12	16566001	16594000	27999	OsKitaake12g124900
Deletion	Chr5	16666001	16693000	26999	2
Deletion	Chr11	16841001	16879000	37999	2
Deletion	Chr2	17088001	17115000	26999	OsKitaake02g172800
Deletion	Chr7	17191001	17219000	27999
Deletion	Chr8	17211001	17256000	44999	OsKitaake08g130800
Deletion	Chr3	17298001	17316000	17999
Deletion	Chr10	17321001	17339000	17999
Deletion	Chr6	17729001	17748000	18999	OsKitaake06g163600
Deletion	Chr2	17833001	17854000	20999
Deletion	Chr8	18074001	18119000	44999	2
Deletion	Chr6	18202001	18217000	14999
Deletion	Chr12	18204001	18225000	20999
Deletion	Chr10	18566001	18597000	30999	OsKitaake10g132100
Deletion	Chr2	18696001	18706000	9999	OsKitaake02g184000
Deletion	Chr5	18712001	18737000	24999	OsKitaake05g146000
Deletion	Chr7	18895001	18902000	6999
Deletion	Chr12	18928001	18967000	38999	3
Deletion	Chr4	18930001	18949000	18999	4
Deletion	Chr7	19189276	19189278	2
Deletion	Chr8	19248001	19264000	15999
Deletion	Chr3	19419001	19470000	50999
Deletion	Chr8	19436001	19459000	22999	4
Deletion	Chr1	19495001	19511000	15999
Deletion	Chr6	19587001	19602000	14999	OsKitaake06g175500
Deletion	Chr5	19603001	19623000	19999
Deletion	Chr12	19638028	19638034	6
Deletion	Chr4	19657001	19667000	9999	OsKitaake04g102200
Deletion	Chr6	19692001	19715000	22999	2
Deletion	Chr1	19780001	19805000	24999	2
Deletion	Chr1	20092001	20121000	28999
Deletion	Chr9	20159365	20159368	3
Deletion	Chr2	20201001	20225000	23999
Deletion	Chr8	20377001	20394000	16999	OsKitaake08g150900
Deletion	Chr7	20389001	20401000	11999
Deletion	Chr1	20541001	20581000	39999	OsKitaake01g201000
Deletion	Chr7	20633001	20644000	10999
Deletion	Chr12	20641001	20662000	20999	2
Deletion	Chr3	20866001	20876000	9999	OsKitaake03g232500
Deletion	Chr1	21152001	21177000	24999	OsKitaake01g206900
Deletion	Chr5	21206620	21206621	1
Deletion	Chr8	21274001	21286000	11999
Deletion	Chr11	21310001	21323000	12999
Deletion	Chr9	21468542	21468549	7
Deletion	Chr2	21612001	21646000	33999	OsKitaake02g209400
Deletion	Chr11	21665001	21681000	15999	3
Deletion	Chr6	21840001	21866000	25999	OsKitaake06g192500
Deletion	Chr8	21931001	21958000	26999	2
Deletion	Chr7	21939001	21953000	13999	OsKitaake07g183900
Deletion	Chr9	22288001	22320000	31999	3
Deletion	Chr2	22555001	22578000	22999	2
Deletion	Chr4	22926105	22926115	10
Deletion	Chr3	23062606	23062615	9
Deletion	Chr8	23535001	23552000	16999
Deletion	Chr11	23579001	23598000	18999
Deletion	Chr8	23717001	23739000	21999
Deletion	Chr5	23823001	23838000	14999	2
Deletion	Chr1	24224001	24246000	21999	3
Deletion	Chr6	24243001	24271000	27999	2
Deletion	Chr8	24390001	24403000	12999
Deletion	Chr3	24774001	24802000	27999
Deletion	Chr2	24943001	24961000	17999
Deletion	Chr11	25144001	25159000	14999	OsKitaake11g203050
Deletion	Chr2	25522001	25591000	68999	11
Deletion	Chr8	25570001	25600000	29999	6
Deletion	Chr2	25606001	25622000	15999	5
Deletion	Chr12	25614001	25630000	15999	2
Deletion	Chr3	26375001	26396000	20999	2
Deletion	Chr3	26635001	26652000	16999
Deletion	Chr7	26846001	26863000	16999	OsKitaake07g250200
Deletion	Chr12	26850031	26850037	6
Deletion	Chr4	27250001	27266000	15999
Deletion	Chr11	27286001	27304000	17999	OsKitaake11g223300
Deletion	Chr7	27327001	27343000	15999
Deletion	Chr8	27331001	27368000	36999	5
Deletion	Chr4	27333001	27346000	12999	2
Deletion	Chr2	27543001	27565000	21999	3
Deletion	Chr11	27596001	27617000	20999
Deletion	Chr8	28148001	28164000	15999	4
Deletion	Chr6	28438001	28456000	17999	2
Deletion	Chr5	28440112	28440113	1
Deletion	Chr2	28656001	28675000	18999	2
Deletion	Chr7	29557671	29557683	12
Deletion	Chr2	29820001	29836000	15999	2
Deletion	Chr3	30040016	30040018	2
Deletion	Chr4	30132001	30145000	12999	OsKitaake04g231400
Deletion	Chr4	30465001	30473000	7999
Deletion	Chr4	30988001	31004000	15999
Deletion	Chr4	32186001	32203000	16999	3
Deletion	Chr1	33686001	33699000	12999	5
Deletion	Chr3	33705848	33705853	5
Deletion	Chr4	34145001	34168000	22999
Deletion	Chr3	35402001	35417000	14999	3
Deletion	Chr1	38568568	38568569	1
Deletion	Chr1	38645132	38645133	1
Deletion	Chr1	40410001	40428000	17999	3
Deletion	Chr1	42733001	42755000	21999	OsKitaake01g471100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11979154	12391506
Inversion	Chr1	11979163	12391512

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes