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Mutant Information

Mutant Name	FN3114-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3114-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11713252 G-T Hetero INTERGENIC
SBS Chr1 16769468 T-C Hetero INTERGENIC
SBS Chr1 25165984 C-T Hetero INTERGENIC
SBS Chr1 32343513 A-T Homo INTERGENIC
SBS Chr1 41118329 G-T Hetero INTERGENIC
SBS Chr2 7652178 C-A Hetero INTERGENIC
SBS Chr2 10056487 C-T Hetero STOP_GAINED OsKitaake02g121100
SBS Chr2 16097294 C-A Homo INTRON
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr2 31941406 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 31941407 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 5197831 G-A Hetero INTERGENIC
SBS Chr4 12621000 A-T Homo INTERGENIC
SBS Chr4 14921342 A-T Homo INTERGENIC
SBS Chr4 19983215 A-G Hetero INTERGENIC
SBS Chr4 24127252 G-A Hetero INTERGENIC
SBS Chr5 10849825 C-A Hetero INTERGENIC
SBS Chr6 1635954 A-T Hetero INTERGENIC
SBS Chr6 13591944 A-T Hetero INTERGENIC
SBS Chr6 15291432 T-C Hetero INTERGENIC
SBS Chr6 15291433 A-G Hetero INTERGENIC
SBS Chr6 15303725 G-A Hetero INTERGENIC
SBS Chr6 15303745 T-C Hetero INTERGENIC
SBS Chr6 17176943 A-T Hetero INTERGENIC
SBS Chr6 21307875 C-T Hetero INTRON
SBS Chr6 21860301 C-T Hetero INTERGENIC
SBS Chr6 27037783 T-C Homo UTR_5_PRIME
SBS Chr6 27920354 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g253400
SBS Chr7 2362700 A-G Hetero INTERGENIC
SBS Chr7 4820908 C-A Hetero INTRON
SBS Chr7 12442581 G-A Hetero INTERGENIC
SBS Chr7 16864768 C-A Hetero INTERGENIC
SBS Chr7 23083986 A-G Hetero INTERGENIC
SBS Chr7 28837596 T-G Hetero INTERGENIC
SBS Chr8 502519 T-A Hetero UTR_3_PRIME
SBS Chr8 7308029 G-C Hetero INTERGENIC
SBS Chr8 22822761 T-C Homo INTERGENIC
SBS Chr8 22860661 C-A Homo INTERGENIC
SBS Chr9 12173066 C-A Hetero INTERGENIC
SBS Chr11 8787438 A-T Hetero INTERGENIC
SBS Chr11 13576974 T-G Hetero INTERGENIC
SBS Chr12 13031497 T-C Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 711939 711941 2
Deletion Chr10 714001 776000 61999 OsKitaake10g004900
Deletion Chr7 1233361 1233362 1 OsKitaake07g017400
Deletion Chr11 2783471 2783472 1
Deletion Chr11 8754506 8754509 3
Deletion Chr10 11881277 11881278 1
Deletion Chr7 13900911 13900929 18
Deletion Chr6 17270056 17270058 2
Deletion Chr7 19435217 19435219 2
Deletion Chr8 21333001 21366000 32999 3
Deletion Chr9 22674214 22674220 6 OsKitaake09g208400
Deletion Chr6 22701406 22701407 1
Deletion Chr8 23703001 23741000 37999 OsKitaake08g183100
Deletion Chr3 23941001 23946000 4999
Deletion Chr8 25626275 25626283 8 OsKitaake08g202700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 19951499 19951502 2
Insertion Chr7 1783147 1783158 10
Insertion Chr11 15047374 15047377 2
Insertion Chr11 27196735 27196739 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2230920 2263986
Inversion Chr9 2230924 2264172
Inversion Chr8 21330596 21636866 OsKitaake08g160000
Inversion Chr8 21366704 21636865 OsKitaake08g160300
Inversion Chr8 25333887 25431356 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 10985282 Chr5 5822754
Translocation Chr6 10992247 Chr5 5822752
Translocation Chr8 21366132 Chr2 188286 2
Translocation Chr8 21366516 Chr2 188270 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11713252	G-T	Hetero	INTERGENIC
SBS	Chr1	16769468	T-C	Hetero	INTERGENIC
SBS	Chr1	25165984	C-T	Hetero	INTERGENIC
SBS	Chr1	32343513	A-T	Homo	INTERGENIC
SBS	Chr1	41118329	G-T	Hetero	INTERGENIC
SBS	Chr2	7652178	C-A	Hetero	INTERGENIC
SBS	Chr2	10056487	C-T	Hetero	STOP_GAINED	OsKitaake02g121100
SBS	Chr2	16097294	C-A	Homo	INTRON
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr2	31941406	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31941407	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	5197831	G-A	Hetero	INTERGENIC
SBS	Chr4	12621000	A-T	Homo	INTERGENIC
SBS	Chr4	14921342	A-T	Homo	INTERGENIC
SBS	Chr4	19983215	A-G	Hetero	INTERGENIC
SBS	Chr4	24127252	G-A	Hetero	INTERGENIC
SBS	Chr5	10849825	C-A	Hetero	INTERGENIC
SBS	Chr6	1635954	A-T	Hetero	INTERGENIC
SBS	Chr6	13591944	A-T	Hetero	INTERGENIC
SBS	Chr6	15291432	T-C	Hetero	INTERGENIC
SBS	Chr6	15291433	A-G	Hetero	INTERGENIC
SBS	Chr6	15303725	G-A	Hetero	INTERGENIC
SBS	Chr6	15303745	T-C	Hetero	INTERGENIC
SBS	Chr6	17176943	A-T	Hetero	INTERGENIC
SBS	Chr6	21307875	C-T	Hetero	INTRON
SBS	Chr6	21860301	C-T	Hetero	INTERGENIC
SBS	Chr6	27037783	T-C	Homo	UTR_5_PRIME
SBS	Chr6	27920354	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g253400
SBS	Chr7	2362700	A-G	Hetero	INTERGENIC
SBS	Chr7	4820908	C-A	Hetero	INTRON
SBS	Chr7	12442581	G-A	Hetero	INTERGENIC
SBS	Chr7	16864768	C-A	Hetero	INTERGENIC
SBS	Chr7	23083986	A-G	Hetero	INTERGENIC
SBS	Chr7	28837596	T-G	Hetero	INTERGENIC
SBS	Chr8	502519	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	7308029	G-C	Hetero	INTERGENIC
SBS	Chr8	22822761	T-C	Homo	INTERGENIC
SBS	Chr8	22860661	C-A	Homo	INTERGENIC
SBS	Chr9	12173066	C-A	Hetero	INTERGENIC
SBS	Chr11	8787438	A-T	Hetero	INTERGENIC
SBS	Chr11	13576974	T-G	Hetero	INTERGENIC
SBS	Chr12	13031497	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	711939	711941	2
Deletion	Chr10	714001	776000	61999	OsKitaake10g004900
Deletion	Chr7	1233361	1233362	1	OsKitaake07g017400
Deletion	Chr11	2783471	2783472	1
Deletion	Chr11	8754506	8754509	3
Deletion	Chr10	11881277	11881278	1
Deletion	Chr7	13900911	13900929	18
Deletion	Chr6	17270056	17270058	2
Deletion	Chr7	19435217	19435219	2
Deletion	Chr8	21333001	21366000	32999	3
Deletion	Chr9	22674214	22674220	6	OsKitaake09g208400
Deletion	Chr6	22701406	22701407	1
Deletion	Chr8	23703001	23741000	37999	OsKitaake08g183100
Deletion	Chr3	23941001	23946000	4999
Deletion	Chr8	25626275	25626283	8	OsKitaake08g202700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2230920	2263986
Inversion	Chr9	2230924	2264172
Inversion	Chr8	21330596	21636866	OsKitaake08g160000
Inversion	Chr8	21366704	21636865	OsKitaake08g160300
Inversion	Chr8	25333887	25431356	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes