Search Kitaake

Mutant Information

Mutant Name	FN3115-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3115-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13054727 A-G Hetero INTRON
SBS Chr1 13054728 C-T Hetero INTRON
SBS Chr2 6432955 C-T Homo INTRON
SBS Chr2 29749978 G-A Hetero INTERGENIC
SBS Chr3 8991388 G-A Hetero INTERGENIC
SBS Chr4 1528040 C-T Hetero INTERGENIC
SBS Chr4 14051555 T-A Hetero INTERGENIC
SBS Chr4 14051556 C-A Hetero INTERGENIC
SBS Chr4 14051561 G-A Hetero INTERGENIC
SBS Chr4 30289504 A-C Homo NON_SYNONYMOUS_CODING OsKitaake04g233201
SBS Chr5 19188207 C-T Hetero INTERGENIC
SBS Chr5 23276194 T-C Hetero INTERGENIC
SBS Chr6 12879818 A-G Hetero INTERGENIC
SBS Chr7 2918505 A-G Homo INTERGENIC
SBS Chr7 19971327 C-T Hetero INTERGENIC
SBS Chr7 20103087 C-T Hetero INTERGENIC
SBS Chr7 25430827 C-T Hetero INTERGENIC
SBS Chr8 12848543 G-C Hetero INTERGENIC
SBS Chr9 5506820 T-G Hetero INTERGENIC
SBS Chr9 14336729 C-T Hetero INTERGENIC
SBS Chr9 18386501 C-T Hetero INTERGENIC
SBS Chr10 4822927 A-T Hetero INTERGENIC
SBS Chr10 8930936 G-C Hetero INTERGENIC
SBS Chr10 14506734 A-C Homo INTERGENIC
SBS Chr10 23549639 C-T Hetero INTERGENIC
SBS Chr11 2039643 A-T Hetero INTRON
SBS Chr11 2422295 C-T Hetero INTRON
SBS Chr11 2422296 C-T Hetero INTRON
SBS Chr12 10089103 C-A Hetero INTERGENIC
SBS Chr12 20559106 G-C Hetero INTERGENIC
SBS Chr12 24678529 G-C Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1578560 1578562 2
Deletion Chr11 2424685 2424698 13
Deletion Chr9 5524908 5524912 4
Deletion Chr5 5584724 5584726 2
Deletion Chr4 6558079 6558081 2
Deletion Chr1 6583152 6583155 3
Deletion Chr2 7327867 7327868 1
Deletion Chr6 9351636 9351637 1
Deletion Chr11 10504472 10504473 1
Deletion Chr5 12040103 12040106 3
Deletion Chr1 12255382 12255383 1
Deletion Chr12 12626511 12626527 16
Deletion Chr12 14474470 14474475 5
Deletion Chr12 16350081 16350086 5
Deletion Chr5 17981997 17981998 1
Deletion Chr9 19556368 19556378 10
Deletion Chr6 22355319 22355328 9
Deletion Chr10 23987452 23987459 7 OsKitaake10g208000
Deletion Chr2 27045759 27045763 4
Deletion Chr3 27697103 27697105 2
Deletion Chr8 28432438 28432439 1
Deletion Chr3 34352426 34352440 14 OsKitaake03g372700
Deletion Chr3 36129202 36129208 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 5377167 5377171 3 OsKitaake07g065300
Insertion Chr8 469848 469851 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 11309905 12080948 OsKitaake05g097600
Inversion Chr4 14026740 14153870 OsKitaake04g067700
Inversion Chr4 14026745 14154030 OsKitaake04g067700
Inversion Chr9 19998086 20006634 OsKitaake09g167100

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8305204 Chr9 19496820 OsKitaake09g159000
Translocation Chr10 14382706 Chr9 19499125
Translocation Chr9 16843748 Chr4 29634547 OsKitaake09g125100
Translocation Chr9 16843749 Chr2 35313948 2
Translocation Chr9 19499125 Chr2 35313934 OsKitaake02g370201
Translocation Chr4 29634836 Chr2 35313946 OsKitaake02g370201

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13054727	A-G	Hetero	INTRON
SBS	Chr1	13054728	C-T	Hetero	INTRON
SBS	Chr2	6432955	C-T	Homo	INTRON
SBS	Chr2	29749978	G-A	Hetero	INTERGENIC
SBS	Chr3	8991388	G-A	Hetero	INTERGENIC
SBS	Chr4	1528040	C-T	Hetero	INTERGENIC
SBS	Chr4	14051555	T-A	Hetero	INTERGENIC
SBS	Chr4	14051556	C-A	Hetero	INTERGENIC
SBS	Chr4	14051561	G-A	Hetero	INTERGENIC
SBS	Chr4	30289504	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g233201
SBS	Chr5	19188207	C-T	Hetero	INTERGENIC
SBS	Chr5	23276194	T-C	Hetero	INTERGENIC
SBS	Chr6	12879818	A-G	Hetero	INTERGENIC
SBS	Chr7	2918505	A-G	Homo	INTERGENIC
SBS	Chr7	19971327	C-T	Hetero	INTERGENIC
SBS	Chr7	20103087	C-T	Hetero	INTERGENIC
SBS	Chr7	25430827	C-T	Hetero	INTERGENIC
SBS	Chr8	12848543	G-C	Hetero	INTERGENIC
SBS	Chr9	5506820	T-G	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Hetero	INTERGENIC
SBS	Chr9	18386501	C-T	Hetero	INTERGENIC
SBS	Chr10	4822927	A-T	Hetero	INTERGENIC
SBS	Chr10	8930936	G-C	Hetero	INTERGENIC
SBS	Chr10	14506734	A-C	Homo	INTERGENIC
SBS	Chr10	23549639	C-T	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Hetero	INTRON
SBS	Chr11	2422295	C-T	Hetero	INTRON
SBS	Chr11	2422296	C-T	Hetero	INTRON
SBS	Chr12	10089103	C-A	Hetero	INTERGENIC
SBS	Chr12	20559106	G-C	Hetero	INTERGENIC
SBS	Chr12	24678529	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1578560	1578562	2
Deletion	Chr11	2424685	2424698	13
Deletion	Chr9	5524908	5524912	4
Deletion	Chr5	5584724	5584726	2
Deletion	Chr4	6558079	6558081	2
Deletion	Chr1	6583152	6583155	3
Deletion	Chr2	7327867	7327868	1
Deletion	Chr6	9351636	9351637	1
Deletion	Chr11	10504472	10504473	1
Deletion	Chr5	12040103	12040106	3
Deletion	Chr1	12255382	12255383	1
Deletion	Chr12	12626511	12626527	16
Deletion	Chr12	14474470	14474475	5
Deletion	Chr12	16350081	16350086	5
Deletion	Chr5	17981997	17981998	1
Deletion	Chr9	19556368	19556378	10
Deletion	Chr6	22355319	22355328	9
Deletion	Chr10	23987452	23987459	7	OsKitaake10g208000
Deletion	Chr2	27045759	27045763	4
Deletion	Chr3	27697103	27697105	2
Deletion	Chr8	28432438	28432439	1
Deletion	Chr3	34352426	34352440	14	OsKitaake03g372700
Deletion	Chr3	36129202	36129208	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	11309905	12080948	OsKitaake05g097600
Inversion	Chr4	14026740	14153870	OsKitaake04g067700
Inversion	Chr4	14026745	14154030	OsKitaake04g067700
Inversion	Chr9	19998086	20006634	OsKitaake09g167100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes