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Mutant Information

Mutant Name	FN3117-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3117-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32028162	A-T	Hetero	INTERGENIC
SBS	Chr2	23785766	A-T	Hetero	INTERGENIC
SBS	Chr2	25992717	T-A	Hetero	INTERGENIC
SBS	Chr3	23051013	T-A	Hetero	INTERGENIC
SBS	Chr4	1031114	G-A	Homo	INTERGENIC
SBS	Chr4	29756999	G-A	Hetero	INTERGENIC
SBS	Chr5	6697500	C-T	Hetero	INTRON
SBS	Chr5	12582576	C-T	Hetero	INTERGENIC
SBS	Chr6	4113873	C-T	Hetero	INTERGENIC
SBS	Chr6	8401242	C-T	Hetero	INTERGENIC
SBS	Chr6	8995853	G-A	Hetero	INTERGENIC
SBS	Chr6	15736422	G-T	Hetero	INTERGENIC
SBS	Chr6	16880482	T-A	Homo	INTRON
SBS	Chr8	8095783	C-T	Homo	INTERGENIC
SBS	Chr8	13603622	A-T	Homo	INTERGENIC
SBS	Chr8	16504368	C-T	Hetero	INTERGENIC
SBS	Chr8	25017670	G-A	Homo	INTERGENIC
SBS	Chr10	14218415	G-T	Hetero	INTERGENIC
SBS	Chr11	4163550	T-A	Hetero	INTRON
SBS	Chr11	6069811	G-A	Hetero	INTERGENIC
SBS	Chr11	15423560	G-C	Hetero	INTERGENIC
SBS	Chr11	16240564	A-G	Hetero	INTERGENIC
SBS	Chr11	20340088	G-A	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4516948	4516949	1
Deletion	Chr7	12093204	12093209	5
Deletion	Chr7	13541001	13596000	54999	OsKitaake07g118900
Deletion	Chr8	13650217	13650218	1
Deletion	Chr1	17189192	17189512	320
Deletion	Chr1	17409299	17409312	13
Deletion	Chr10	22505515	22505524	9
Deletion	Chr10	23492499	23492502	3
Deletion	Chr3	23859105	23859112	7
Deletion	Chr11	25036464	25036466	2
Deletion	Chr4	25739530	25739549	19
Deletion	Chr6	25962241	25962242	1
Deletion	Chr5	27658495	27658497	2	OsKitaake05g252600
Deletion	Chr2	35594321	35594327	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	9660691	9660694	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8613480	8735800	OsKitaake03g119400
Inversion	Chr3	8613491	8735803	OsKitaake03g119400
Inversion	Chr12	14442192	14792783	OsKitaake12g117400

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5012567	Chr4	3828383