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Mutant Information

Mutant Name	FN3119-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3119-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30092257 G-T Hetero INTERGENIC
SBS Chr1 42395708 C-T Hetero INTERGENIC
SBS Chr2 8469279 C-T Hetero INTERGENIC
SBS Chr2 9278562 G-A Hetero INTERGENIC
SBS Chr2 15889164 G-A Hetero INTERGENIC
SBS Chr2 16146511 T-A Hetero INTERGENIC
SBS Chr2 16437399 A-T Hetero INTERGENIC
SBS Chr2 18555847 G-A Hetero INTERGENIC
SBS Chr3 8504540 C-T Hetero INTERGENIC
SBS Chr3 16360430 G-T Homo UTR_3_PRIME
SBS Chr3 25094000 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g266000
SBS Chr3 27688342 A-G Homo INTERGENIC
SBS Chr3 34248508 A-T Hetero INTERGENIC
SBS Chr3 35675109 T-A Hetero INTRON
SBS Chr4 2241502 A-T Homo INTERGENIC
SBS Chr4 6256467 G-A Homo INTERGENIC
SBS Chr4 7644628 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g038400
SBS Chr4 17956468 C-T Hetero INTERGENIC
SBS Chr4 18493470 G-A Hetero INTERGENIC
SBS Chr4 20998038 C-T Hetero INTERGENIC
SBS Chr4 31276464 G-A Homo INTERGENIC
SBS Chr4 31276465 C-T Homo INTERGENIC
SBS Chr4 33370601 C-T Hetero INTERGENIC
SBS Chr5 1835435 C-A Hetero INTERGENIC
SBS Chr5 2083955 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 13860739 A-T Hetero INTERGENIC
SBS Chr6 13327462 T-C Homo INTERGENIC
SBS Chr6 24189603 T-C Homo UTR_3_PRIME
SBS Chr6 29345911 G-T Hetero INTERGENIC
SBS Chr8 778814 A-T Hetero INTERGENIC
SBS Chr8 4275258 C-T Hetero INTERGENIC
SBS Chr8 27268624 C-T Hetero UTR_5_PRIME
SBS Chr9 7718338 C-A Hetero INTERGENIC
SBS Chr9 9191055 C-T Hetero INTERGENIC
SBS Chr9 16907410 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 2255745 G-C Hetero INTERGENIC
SBS Chr11 2255747 G-A Hetero INTERGENIC
SBS Chr11 7767149 T-C Hetero INTRON
SBS Chr11 9956715 C-T Hetero INTERGENIC
SBS Chr11 15362689 C-G Hetero INTERGENIC
SBS Chr12 93478 A-T Hetero INTERGENIC
SBS Chr12 93479 A-G Hetero INTERGENIC
SBS Chr12 19085122 G-T Homo INTERGENIC

Deletions: 119

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 140001 161000 20999
Deletion Chr9 349001 372000 22999
Deletion Chr10 599001 613000 13999
Deletion Chr4 759001 776000 16999
Deletion Chr12 805001 821000 15999 OsKitaake12g011400
Deletion Chr11 967001 981000 13999 4
Deletion Chr10 1026365 1026366 1
Deletion Chr11 1081001 1171000 89999 12
Deletion Chr3 1194263 1194264 1
Deletion Chr1 1561001 1572000 10999 4
Deletion Chr4 1633001 1645000 11999
Deletion Chr9 1649001 1667000 17999
Deletion Chr4 2079001 2105000 25999
Deletion Chr3 2147431 2147435 4 OsKitaake03g030600
Deletion Chr2 3960001 3984000 23999 OsKitaake02g056720
Deletion Chr9 4170001 4184000 13999
Deletion Chr4 4265001 4299000 33999 2
Deletion Chr10 4333001 4344000 10999
Deletion Chr5 4798001 4812000 13999
Deletion Chr7 4799001 4818000 18999 4
Deletion Chr10 4938001 4985000 46999 2
Deletion Chr4 5668001 5701000 32999 OsKitaake04g027900
Deletion Chr4 6095001 6117000 21999
Deletion Chr4 6752001 6767000 14999 OsKitaake04g034300
Deletion Chr10 7054001 7074000 19999
Deletion Chr11 7589001 7601000 11999 OsKitaake11g085300
Deletion Chr9 7625001 7645000 19999
Deletion Chr12 7637001 7663000 25999 OsKitaake12g083000
Deletion Chr10 7788001 7808000 19999 OsKitaake10g049600
Deletion Chr1 8097530 8097532 2
Deletion Chr2 8422611 8422612 1
Deletion Chr1 8456384 8456387 3
Deletion Chr6 8756001 8776000 19999 2
Deletion Chr5 8764001 8789000 24999
Deletion Chr9 8785001 8805000 19999
Deletion Chr4 8868001 8880000 11999
Deletion Chr7 9293001 9309000 15999
Deletion Chr6 9335001 9352000 16999 2
Deletion Chr4 9525001 9565000 39999 OsKitaake04g049400
Deletion Chr11 9557001 9578000 20999 OsKitaake11g099800
Deletion Chr5 9576001 9592000 15999 OsKitaake05g088200
Deletion Chr6 9688142 9688143 1
Deletion Chr11 10031001 10049000 17999 4
Deletion Chr5 10118001 10152000 33999 OsKitaake05g089901
Deletion Chr8 10402001 10413000 10999
Deletion Chr11 10984001 11008000 23999
Deletion Chr4 11271001 11302000 30999
Deletion Chr8 11278001 11301000 22999
Deletion Chr12 11381001 11404000 22999
Deletion Chr12 11441001 11468000 26999 OsKitaake12g102401
Deletion Chr4 11442001 11460000 17999
Deletion Chr4 11543001 11567000 23999
Deletion Chr6 11566001 11619000 52999
Deletion Chr11 11627001 11655000 27999
Deletion Chr8 11859001 11875000 15999 OsKitaake08g104200
Deletion Chr5 11926131 11926139 8
Deletion Chr7 11928001 11952000 23999
Deletion Chr5 11938001 11982000 43999 3
Deletion Chr5 12011001 12036000 24999
Deletion Chr7 12020001 12039000 18999
Deletion Chr6 12094001 12107000 12999 OsKitaake06g130600
Deletion Chr5 12208001 12235000 26999
Deletion Chr6 12251001 12268000 16999 OsKitaake06g131500
Deletion Chr4 12428001 12446000 17999
Deletion Chr9 13065001 13082000 16999
Deletion Chr9 13389927 13389943 16
Deletion Chr6 13509001 13522000 12999
Deletion Chr11 13573001 13606000 32999 2
Deletion Chr2 13703001 13736000 32999 OsKitaake02g150350
Deletion Chr12 13808001 13833000 24999 3
Deletion Chr7 14170001 14197000 26999 2
Deletion Chr6 14574001 14603000 28999 OsKitaake06g148800
Deletion Chr9 14814001 14830000 15999 OsKitaake09g101500
Deletion Chr4 14867001 14908000 40999 3
Deletion Chr2 15173001 15191000 17999 OsKitaake02g158700
Deletion Chr4 15201001 15222000 20999 OsKitaake04g073100
Deletion Chr4 15728395 15728396 1
Deletion Chr12 16010001 16061000 50999 3
Deletion Chr1 16246001 16284000 37999 2
Deletion Chr11 16853001 16881000 27999 3
Deletion Chr6 16928001 16941000 12999
Deletion Chr5 17119400 17119402 2
Deletion Chr7 17197001 17216000 18999
Deletion Chr10 17318001 17334000 15999
Deletion Chr6 17729001 17747000 17999 OsKitaake06g163600
Deletion Chr8 18081001 18114000 32999 OsKitaake08g134500
Deletion Chr12 18203001 18224000 20999
Deletion Chr3 18685001 18714000 28999 OsKitaake03g225500
Deletion Chr8 19246001 19267000 20999
Deletion Chr5 19601001 19624000 22999
Deletion Chr6 19695001 19713000 17999 2
Deletion Chr1 20544001 20567000 22999
Deletion Chr6 20553534 20553536 2
Deletion Chr12 21245001 21276000 30999 OsKitaake12g167050
Deletion Chr2 21625001 21643000 17999
Deletion Chr4 21698500 21698503 3 OsKitaake04g123600
Deletion Chr6 21847001 21865000 17999
Deletion Chr8 21927001 21954000 26999 OsKitaake08g166000
Deletion Chr7 22589001 22619000 29999 6
Deletion Chr6 22909875 22909882 7
Deletion Chr11 23034001 23052000 17999 2
Deletion Chr8 23720001 23738000 17999
Deletion Chr10 24037262 24037263 1
Deletion Chr2 24145001 24172000 26999 7
Deletion Chr6 24240001 24259000 18999
Deletion Chr3 24326582 24326596 14
Deletion Chr8 25573001 25593000 19999 5
Deletion Chr5 26340001 26355000 14999 3
Deletion Chr5 26404644 26404650 6
Deletion Chr7 26520001 26567000 46999 5
Deletion Chr7 26845001 26870000 24999 2
Deletion Chr5 27864113 27864114 1
Deletion Chr2 28657001 28683000 25999 3
Deletion Chr3 29811001 29830000 18999 3
Deletion Chr4 32041001 32057000 15999
Deletion Chr3 34230502 34230504 2 OsKitaake03g370300
Deletion Chr3 35707001 35726000 18999 3
Deletion Chr4 36008001 36022000 13999 4
Deletion Chr1 38120001 38141000 20999 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16037061 16037064 2
Insertion Chr2 158606 158614 7
Insertion Chr6 19563703 19563706 2
Insertion Chr6 30677758 30677761 2
Insertion Chr9 17162371 17162377 5
Insertion Chr9 19343328 19343332 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30092257	G-T	Hetero	INTERGENIC
SBS	Chr1	42395708	C-T	Hetero	INTERGENIC
SBS	Chr2	8469279	C-T	Hetero	INTERGENIC
SBS	Chr2	9278562	G-A	Hetero	INTERGENIC
SBS	Chr2	15889164	G-A	Hetero	INTERGENIC
SBS	Chr2	16146511	T-A	Hetero	INTERGENIC
SBS	Chr2	16437399	A-T	Hetero	INTERGENIC
SBS	Chr2	18555847	G-A	Hetero	INTERGENIC
SBS	Chr3	8504540	C-T	Hetero	INTERGENIC
SBS	Chr3	16360430	G-T	Homo	UTR_3_PRIME
SBS	Chr3	25094000	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g266000
SBS	Chr3	27688342	A-G	Homo	INTERGENIC
SBS	Chr3	34248508	A-T	Hetero	INTERGENIC
SBS	Chr3	35675109	T-A	Hetero	INTRON
SBS	Chr4	2241502	A-T	Homo	INTERGENIC
SBS	Chr4	6256467	G-A	Homo	INTERGENIC
SBS	Chr4	7644628	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g038400
SBS	Chr4	17956468	C-T	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Hetero	INTERGENIC
SBS	Chr4	20998038	C-T	Hetero	INTERGENIC
SBS	Chr4	31276464	G-A	Homo	INTERGENIC
SBS	Chr4	31276465	C-T	Homo	INTERGENIC
SBS	Chr4	33370601	C-T	Hetero	INTERGENIC
SBS	Chr5	1835435	C-A	Hetero	INTERGENIC
SBS	Chr5	2083955	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	13860739	A-T	Hetero	INTERGENIC
SBS	Chr6	13327462	T-C	Homo	INTERGENIC
SBS	Chr6	24189603	T-C	Homo	UTR_3_PRIME
SBS	Chr6	29345911	G-T	Hetero	INTERGENIC
SBS	Chr8	778814	A-T	Hetero	INTERGENIC
SBS	Chr8	4275258	C-T	Hetero	INTERGENIC
SBS	Chr8	27268624	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	7718338	C-A	Hetero	INTERGENIC
SBS	Chr9	9191055	C-T	Hetero	INTERGENIC
SBS	Chr9	16907410	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	2255745	G-C	Hetero	INTERGENIC
SBS	Chr11	2255747	G-A	Hetero	INTERGENIC
SBS	Chr11	7767149	T-C	Hetero	INTRON
SBS	Chr11	9956715	C-T	Hetero	INTERGENIC
SBS	Chr11	15362689	C-G	Hetero	INTERGENIC
SBS	Chr12	93478	A-T	Hetero	INTERGENIC
SBS	Chr12	93479	A-G	Hetero	INTERGENIC
SBS	Chr12	19085122	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	140001	161000	20999
Deletion	Chr9	349001	372000	22999
Deletion	Chr10	599001	613000	13999
Deletion	Chr4	759001	776000	16999
Deletion	Chr12	805001	821000	15999	OsKitaake12g011400
Deletion	Chr11	967001	981000	13999	4
Deletion	Chr10	1026365	1026366	1
Deletion	Chr11	1081001	1171000	89999	12
Deletion	Chr3	1194263	1194264	1
Deletion	Chr1	1561001	1572000	10999	4
Deletion	Chr4	1633001	1645000	11999
Deletion	Chr9	1649001	1667000	17999
Deletion	Chr4	2079001	2105000	25999
Deletion	Chr3	2147431	2147435	4	OsKitaake03g030600
Deletion	Chr2	3960001	3984000	23999	OsKitaake02g056720
Deletion	Chr9	4170001	4184000	13999
Deletion	Chr4	4265001	4299000	33999	2
Deletion	Chr10	4333001	4344000	10999
Deletion	Chr5	4798001	4812000	13999
Deletion	Chr7	4799001	4818000	18999	4
Deletion	Chr10	4938001	4985000	46999	2
Deletion	Chr4	5668001	5701000	32999	OsKitaake04g027900
Deletion	Chr4	6095001	6117000	21999
Deletion	Chr4	6752001	6767000	14999	OsKitaake04g034300
Deletion	Chr10	7054001	7074000	19999
Deletion	Chr11	7589001	7601000	11999	OsKitaake11g085300
Deletion	Chr9	7625001	7645000	19999
Deletion	Chr12	7637001	7663000	25999	OsKitaake12g083000
Deletion	Chr10	7788001	7808000	19999	OsKitaake10g049600
Deletion	Chr1	8097530	8097532	2
Deletion	Chr2	8422611	8422612	1
Deletion	Chr1	8456384	8456387	3
Deletion	Chr6	8756001	8776000	19999	2
Deletion	Chr5	8764001	8789000	24999
Deletion	Chr9	8785001	8805000	19999
Deletion	Chr4	8868001	8880000	11999
Deletion	Chr7	9293001	9309000	15999
Deletion	Chr6	9335001	9352000	16999	2
Deletion	Chr4	9525001	9565000	39999	OsKitaake04g049400
Deletion	Chr11	9557001	9578000	20999	OsKitaake11g099800
Deletion	Chr5	9576001	9592000	15999	OsKitaake05g088200
Deletion	Chr6	9688142	9688143	1
Deletion	Chr11	10031001	10049000	17999	4
Deletion	Chr5	10118001	10152000	33999	OsKitaake05g089901
Deletion	Chr8	10402001	10413000	10999
Deletion	Chr11	10984001	11008000	23999
Deletion	Chr4	11271001	11302000	30999
Deletion	Chr8	11278001	11301000	22999
Deletion	Chr12	11381001	11404000	22999
Deletion	Chr12	11441001	11468000	26999	OsKitaake12g102401
Deletion	Chr4	11442001	11460000	17999
Deletion	Chr4	11543001	11567000	23999
Deletion	Chr6	11566001	11619000	52999
Deletion	Chr11	11627001	11655000	27999
Deletion	Chr8	11859001	11875000	15999	OsKitaake08g104200
Deletion	Chr5	11926131	11926139	8
Deletion	Chr7	11928001	11952000	23999
Deletion	Chr5	11938001	11982000	43999	3
Deletion	Chr5	12011001	12036000	24999
Deletion	Chr7	12020001	12039000	18999
Deletion	Chr6	12094001	12107000	12999	OsKitaake06g130600
Deletion	Chr5	12208001	12235000	26999
Deletion	Chr6	12251001	12268000	16999	OsKitaake06g131500
Deletion	Chr4	12428001	12446000	17999
Deletion	Chr9	13065001	13082000	16999
Deletion	Chr9	13389927	13389943	16
Deletion	Chr6	13509001	13522000	12999
Deletion	Chr11	13573001	13606000	32999	2
Deletion	Chr2	13703001	13736000	32999	OsKitaake02g150350
Deletion	Chr12	13808001	13833000	24999	3
Deletion	Chr7	14170001	14197000	26999	2
Deletion	Chr6	14574001	14603000	28999	OsKitaake06g148800
Deletion	Chr9	14814001	14830000	15999	OsKitaake09g101500
Deletion	Chr4	14867001	14908000	40999	3
Deletion	Chr2	15173001	15191000	17999	OsKitaake02g158700
Deletion	Chr4	15201001	15222000	20999	OsKitaake04g073100
Deletion	Chr4	15728395	15728396	1
Deletion	Chr12	16010001	16061000	50999	3
Deletion	Chr1	16246001	16284000	37999	2
Deletion	Chr11	16853001	16881000	27999	3
Deletion	Chr6	16928001	16941000	12999
Deletion	Chr5	17119400	17119402	2
Deletion	Chr7	17197001	17216000	18999
Deletion	Chr10	17318001	17334000	15999
Deletion	Chr6	17729001	17747000	17999	OsKitaake06g163600
Deletion	Chr8	18081001	18114000	32999	OsKitaake08g134500
Deletion	Chr12	18203001	18224000	20999
Deletion	Chr3	18685001	18714000	28999	OsKitaake03g225500
Deletion	Chr8	19246001	19267000	20999
Deletion	Chr5	19601001	19624000	22999
Deletion	Chr6	19695001	19713000	17999	2
Deletion	Chr1	20544001	20567000	22999
Deletion	Chr6	20553534	20553536	2
Deletion	Chr12	21245001	21276000	30999	OsKitaake12g167050
Deletion	Chr2	21625001	21643000	17999
Deletion	Chr4	21698500	21698503	3	OsKitaake04g123600
Deletion	Chr6	21847001	21865000	17999
Deletion	Chr8	21927001	21954000	26999	OsKitaake08g166000
Deletion	Chr7	22589001	22619000	29999	6
Deletion	Chr6	22909875	22909882	7
Deletion	Chr11	23034001	23052000	17999	2
Deletion	Chr8	23720001	23738000	17999
Deletion	Chr10	24037262	24037263	1
Deletion	Chr2	24145001	24172000	26999	7
Deletion	Chr6	24240001	24259000	18999
Deletion	Chr3	24326582	24326596	14
Deletion	Chr8	25573001	25593000	19999	5
Deletion	Chr5	26340001	26355000	14999	3
Deletion	Chr5	26404644	26404650	6
Deletion	Chr7	26520001	26567000	46999	5
Deletion	Chr7	26845001	26870000	24999	2
Deletion	Chr5	27864113	27864114	1
Deletion	Chr2	28657001	28683000	25999	3
Deletion	Chr3	29811001	29830000	18999	3
Deletion	Chr4	32041001	32057000	15999
Deletion	Chr3	34230502	34230504	2	OsKitaake03g370300
Deletion	Chr3	35707001	35726000	18999	3
Deletion	Chr4	36008001	36022000	13999	4
Deletion	Chr1	38120001	38141000	20999	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes