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Mutant Information

Mutant Name	FN3123-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3123-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6571401 A-T Homo INTERGENIC
SBS Chr1 26322377 T-A Hetero INTERGENIC
SBS Chr1 26322378 G-A Hetero INTERGENIC
SBS Chr1 31614266 T-A Hetero INTERGENIC
SBS Chr1 37070365 T-G Hetero INTERGENIC
SBS Chr1 38566437 T-C Hetero INTERGENIC
SBS Chr2 1292989 T-C Hetero INTERGENIC
SBS Chr2 2481969 G-T Hetero INTERGENIC
SBS Chr2 7326137 C-A Hetero INTERGENIC
SBS Chr2 16270344 C-T Hetero INTERGENIC
SBS Chr2 17792067 T-C Hetero INTERGENIC
SBS Chr3 15019727 A-G Hetero INTRON
SBS Chr3 15993907 T-A Hetero INTERGENIC
SBS Chr3 18445095 C-T Homo INTRON
SBS Chr3 28486562 A-T Hetero INTERGENIC
SBS Chr4 8145958 G-A Hetero INTERGENIC
SBS Chr4 11625967 A-T Hetero INTERGENIC
SBS Chr4 15703297 C-G Hetero INTERGENIC
SBS Chr5 218589 G-A Homo INTERGENIC
SBS Chr5 218595 G-A Homo INTERGENIC
SBS Chr5 10258765 C-T Homo INTERGENIC
SBS Chr6 626692 T-A Hetero UTR_3_PRIME
SBS Chr6 11794281 T-C Hetero INTERGENIC
SBS Chr6 14542692 C-T Homo INTERGENIC
SBS Chr6 20994138 C-T Homo INTRON
SBS Chr6 21836261 C-T Homo INTERGENIC
SBS Chr6 29730550 C-T Hetero INTRON
SBS Chr6 30194345 A-C Hetero INTERGENIC
SBS Chr7 4152830 C-T Homo INTRON
SBS Chr7 6158933 A-G Homo UTR_3_PRIME
SBS Chr7 21080002 A-G Hetero INTRON
SBS Chr7 22146848 T-A Hetero INTERGENIC
SBS Chr7 23232471 G-A Hetero INTERGENIC
SBS Chr7 23232472 G-A Hetero INTERGENIC
SBS Chr7 25233729 G-A Hetero INTERGENIC
SBS Chr7 28897505 G-A Homo INTERGENIC
SBS Chr7 29659285 A-T Homo INTERGENIC
SBS Chr8 7072579 C-T Homo INTERGENIC
SBS Chr9 7296191 T-G Hetero INTERGENIC
SBS Chr10 1967779 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g015500
SBS Chr10 5404106 T-C Hetero INTERGENIC
SBS Chr10 5674714 G-T Hetero INTERGENIC
SBS Chr10 18216762 G-A Hetero INTRON
SBS Chr11 12709957 C-T Homo INTERGENIC
SBS Chr11 14278323 C-G Homo INTRON
SBS Chr11 29302851 G-A Hetero INTERGENIC
SBS Chr11 29302852 C-T Hetero INTERGENIC
SBS Chr12 7913779 G-A Hetero INTERGENIC
SBS Chr12 21877678 C-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 270473 270474 1
Deletion Chr8 433521 433523 2
Deletion Chr8 8353839 8353841 2
Deletion Chr11 8757001 8782000 24999 OsKitaake11g094700
Deletion Chr12 11378001 11406000 27999
Deletion Chr5 13121346 13121352 6
Deletion Chr10 17748680 17748684 4
Deletion Chr1 20541001 20574000 32999
Deletion Chr12 26503742 26503744 2
Deletion Chr1 43691615 43691616 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 176980 176987 6
Insertion Chr5 2467366 2467369 2
Insertion Chr8 2691095 2691098 2
Insertion Chr9 4671009 4671012 2
Insertion Chr9 20920689 20920692 2
Insertion Chr6 89620 89623 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 26887669 26898194 OsKitaake01g261500
Inversion Chr1 26887673 26899025 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6579350 Chr7 12397636
Translocation Chr9 6579351 Chr1 34108767
Translocation Chr7 12398729 Chr4 34130460 OsKitaake04g284927
Translocation Chr4 34130466 Chr1 34108774 OsKitaake04g284927

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6571401	A-T	Homo	INTERGENIC
SBS	Chr1	26322377	T-A	Hetero	INTERGENIC
SBS	Chr1	26322378	G-A	Hetero	INTERGENIC
SBS	Chr1	31614266	T-A	Hetero	INTERGENIC
SBS	Chr1	37070365	T-G	Hetero	INTERGENIC
SBS	Chr1	38566437	T-C	Hetero	INTERGENIC
SBS	Chr2	1292989	T-C	Hetero	INTERGENIC
SBS	Chr2	2481969	G-T	Hetero	INTERGENIC
SBS	Chr2	7326137	C-A	Hetero	INTERGENIC
SBS	Chr2	16270344	C-T	Hetero	INTERGENIC
SBS	Chr2	17792067	T-C	Hetero	INTERGENIC
SBS	Chr3	15019727	A-G	Hetero	INTRON
SBS	Chr3	15993907	T-A	Hetero	INTERGENIC
SBS	Chr3	18445095	C-T	Homo	INTRON
SBS	Chr3	28486562	A-T	Hetero	INTERGENIC
SBS	Chr4	8145958	G-A	Hetero	INTERGENIC
SBS	Chr4	11625967	A-T	Hetero	INTERGENIC
SBS	Chr4	15703297	C-G	Hetero	INTERGENIC
SBS	Chr5	218589	G-A	Homo	INTERGENIC
SBS	Chr5	218595	G-A	Homo	INTERGENIC
SBS	Chr5	10258765	C-T	Homo	INTERGENIC
SBS	Chr6	626692	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	11794281	T-C	Hetero	INTERGENIC
SBS	Chr6	14542692	C-T	Homo	INTERGENIC
SBS	Chr6	20994138	C-T	Homo	INTRON
SBS	Chr6	21836261	C-T	Homo	INTERGENIC
SBS	Chr6	29730550	C-T	Hetero	INTRON
SBS	Chr6	30194345	A-C	Hetero	INTERGENIC
SBS	Chr7	4152830	C-T	Homo	INTRON
SBS	Chr7	6158933	A-G	Homo	UTR_3_PRIME
SBS	Chr7	21080002	A-G	Hetero	INTRON
SBS	Chr7	22146848	T-A	Hetero	INTERGENIC
SBS	Chr7	23232471	G-A	Hetero	INTERGENIC
SBS	Chr7	23232472	G-A	Hetero	INTERGENIC
SBS	Chr7	25233729	G-A	Hetero	INTERGENIC
SBS	Chr7	28897505	G-A	Homo	INTERGENIC
SBS	Chr7	29659285	A-T	Homo	INTERGENIC
SBS	Chr8	7072579	C-T	Homo	INTERGENIC
SBS	Chr9	7296191	T-G	Hetero	INTERGENIC
SBS	Chr10	1967779	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g015500
SBS	Chr10	5404106	T-C	Hetero	INTERGENIC
SBS	Chr10	5674714	G-T	Hetero	INTERGENIC
SBS	Chr10	18216762	G-A	Hetero	INTRON
SBS	Chr11	12709957	C-T	Homo	INTERGENIC
SBS	Chr11	14278323	C-G	Homo	INTRON
SBS	Chr11	29302851	G-A	Hetero	INTERGENIC
SBS	Chr11	29302852	C-T	Hetero	INTERGENIC
SBS	Chr12	7913779	G-A	Hetero	INTERGENIC
SBS	Chr12	21877678	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	270473	270474	1
Deletion	Chr8	433521	433523	2
Deletion	Chr8	8353839	8353841	2
Deletion	Chr11	8757001	8782000	24999	OsKitaake11g094700
Deletion	Chr12	11378001	11406000	27999
Deletion	Chr5	13121346	13121352	6
Deletion	Chr10	17748680	17748684	4
Deletion	Chr1	20541001	20574000	32999
Deletion	Chr12	26503742	26503744	2
Deletion	Chr1	43691615	43691616	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26887669	26898194	OsKitaake01g261500
Inversion	Chr1	26887673	26899025	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes