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Mutant Information

Mutant Name	FN3126-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3126-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3012523 G-A Hetero INTERGENIC
SBS Chr1 12468214 C-T Hetero INTERGENIC
SBS Chr1 16740856 G-T Hetero INTERGENIC
SBS Chr1 29662105 G-A Homo INTERGENIC
SBS Chr1 36878408 G-A Homo UTR_3_PRIME
SBS Chr2 1199143 C-A Homo INTRON
SBS Chr2 25206597 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g248201
SBS Chr2 26041404 G-A Homo INTERGENIC
SBS Chr2 29918000 A-G Hetero INTERGENIC
SBS Chr2 33795886 C-T Hetero INTERGENIC
SBS Chr2 36012626 C-T Hetero INTRON
SBS Chr3 11837264 T-C Hetero INTERGENIC
SBS Chr3 19574246 T-A Hetero INTERGENIC
SBS Chr3 22077465 G-A Hetero INTERGENIC
SBS Chr3 22077559 T-G Hetero INTERGENIC
SBS Chr3 22077609 A-G Hetero INTERGENIC
SBS Chr3 36443181 C-T Homo UTR_3_PRIME
SBS Chr4 7729903 G-A Homo INTERGENIC
SBS Chr4 14374535 A-C Homo INTERGENIC
SBS Chr4 14374536 G-T Homo INTERGENIC
SBS Chr4 16554847 A-C Hetero INTERGENIC
SBS Chr4 27927056 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g206900
SBS Chr4 35520071 C-A Hetero UTR_5_PRIME
SBS Chr5 6046256 G-T Hetero INTERGENIC
SBS Chr5 19635650 A-C Homo INTERGENIC
SBS Chr5 19892000 G-A Homo INTRON
SBS Chr5 20271448 C-T Homo INTERGENIC
SBS Chr6 10611060 C-T Hetero INTERGENIC
SBS Chr6 17644732 G-A Hetero INTERGENIC
SBS Chr6 24276186 G-A Hetero INTERGENIC
SBS Chr7 16927728 G-A Hetero INTERGENIC
SBS Chr7 20711178 A-T Homo INTERGENIC
SBS Chr8 3449957 T-A Hetero INTERGENIC
SBS Chr8 16780751 C-T Homo INTERGENIC
SBS Chr8 20488000 G-C Homo INTERGENIC
SBS Chr8 21259413 C-T Homo INTERGENIC
SBS Chr9 623255 G-A Hetero INTERGENIC
SBS Chr9 1269672 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g007900
SBS Chr9 2147750 C-T Hetero INTERGENIC
SBS Chr9 2192399 G-A Hetero INTERGENIC
SBS Chr9 2795698 T-A Hetero INTRON
SBS Chr9 7483183 G-A Hetero INTERGENIC
SBS Chr9 15880434 T-G Homo INTERGENIC
SBS Chr9 18933201 C-T Homo INTRON
SBS Chr9 21877459 C-A Homo INTERGENIC
SBS Chr10 1367485 C-G Hetero INTERGENIC
SBS Chr10 2437290 G-T Hetero INTERGENIC
SBS Chr10 17376112 C-T Homo INTERGENIC
SBS Chr11 13703780 G-A Hetero INTERGENIC
SBS Chr11 24920214 G-A Homo INTERGENIC
SBS Chr12 14455523 C-G Hetero INTERGENIC
SBS Chr12 18267624 C-T Homo INTERGENIC
SBS Chr12 27055543 G-A Hetero INTERGENIC

Deletions: 1045

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 353001 370000 16999
Deletion Chr9 503001 533000 29999 OsKitaake09g003900
Deletion Chr10 538001 557000 18999 2
Deletion Chr12 559001 577000 17999 3
Deletion Chr9 562001 581000 18999
Deletion Chr10 593001 616000 22999 OsKitaake10g004300
Deletion Chr10 626001 647000 20999 OsKitaake10g004400
Deletion Chr9 644001 657000 12999 OsKitaake09g004500
Deletion Chr4 721001 734000 12999 3
Deletion Chr4 752001 779000 26999
Deletion Chr1 776001 791000 14999 7
Deletion Chr8 814001 832000 17999
Deletion Chr7 841001 861000 19999 2
Deletion Chr9 843001 862000 18999 OsKitaake09g005400
Deletion Chr8 913001 928000 14999 OsKitaake08g012200
Deletion Chr10 945001 1047000 101999 7
Deletion Chr4 952001 972000 19999 OsKitaake04g007300
Deletion Chr3 996001 1020000 23999 4
Deletion Chr9 1031001 1067000 35999
Deletion Chr1 1052001 1074000 21999 2
Deletion Chr3 1089001 1113000 23999 3
Deletion Chr6 1091001 1104000 12999 2
Deletion Chr11 1146001 1176000 29999 2
Deletion Chr9 1150001 1170000 19999 OsKitaake09g006900
Deletion Chr12 1175001 1204000 28999 OsKitaake12g017200
Deletion Chr6 1181001 1200000 18999 2
Deletion Chr5 1187001 1218000 30999 4
Deletion Chr9 1213001 1251000 37999 5
Deletion Chr11 1258001 1270000 11999 OsKitaake11g015300
Deletion Chr2 1273001 1287000 13999 4
Deletion Chr9 1274001 1325000 50999 3
Deletion Chr8 1303001 1326000 22999 2
Deletion Chr9 1336001 1364000 27999
Deletion Chr2 1369001 1397000 27999 5
Deletion Chr3 1418001 1443000 24999
Deletion Chr11 1434001 1472000 37999 9
Deletion Chr4 1436001 1456000 19999 OsKitaake04g010500
Deletion Chr9 1438001 1449000 10999 OsKitaake09g008600
Deletion Chr2 1445001 1460000 14999 7
Deletion Chr12 1481001 1518000 36999 6
Deletion Chr2 1481136 1481143 7
Deletion Chr4 1482001 1499000 16999
Deletion Chr9 1517001 1566000 48999 OsKitaake09g009000
Deletion Chr1 1557001 1587000 29999 6
Deletion Chr12 1588001 1607000 18999 2
Deletion Chr4 1591001 1646000 54999 OsKitaake04g010900
Deletion Chr9 1597001 1671000 73999 OsKitaake09g009200
Deletion Chr11 1604001 1626000 21999 4
Deletion Chr1 1648001 1657000 8999 4
Deletion Chr2 1656001 1668000 11999 3
Deletion Chr4 1666001 1678000 11999
Deletion Chr12 1687001 1703000 15999 2
Deletion Chr8 1744001 1758000 13999
Deletion Chr8 1790001 1801000 10999
Deletion Chr8 1844001 1859000 14999
Deletion Chr4 1885001 1898000 12999
Deletion Chr3 1956001 1988000 31999 8
Deletion Chr5 2002001 2012000 9999
Deletion Chr4 2031001 2103000 71999 5
Deletion Chr8 2038001 2057000 18999 4
Deletion Chr3 2427001 2457000 29999 2
Deletion Chr2 2478001 2520000 41999 3
Deletion Chr9 2560001 2575000 14999
Deletion Chr9 2584001 2596000 11999 2
Deletion Chr12 2596001 2614000 17999 2
Deletion Chr4 2602001 2614000 11999
Deletion Chr9 2657001 2672000 14999 OsKitaake09g014700
Deletion Chr11 2661001 2682000 20999 2
Deletion Chr11 2716001 2754000 37999 2
Deletion Chr7 2777001 2789000 11999
Deletion Chr12 2780001 2796000 15999 5
Deletion Chr6 2788001 2804000 15999 2
Deletion Chr10 2791001 2820000 28999 4
Deletion Chr3 2831001 2859000 27999 3
Deletion Chr12 2881001 2900000 18999
Deletion Chr4 2981001 2994000 12999
Deletion Chr10 3007001 3036000 28999 2
Deletion Chr8 3054001 3097000 42999 9
Deletion Chr10 3132001 3175000 42999 3
Deletion Chr3 3162001 3188000 25999 6
Deletion Chr5 3207001 3226000 18999 OsKitaake05g038400
Deletion Chr12 3222001 3242000 19999 2
Deletion Chr6 3261001 3311000 49999 5
Deletion Chr2 3285001 3302000 16999 5
Deletion Chr1 3288001 3315000 26999 3
Deletion Chr7 3334001 3403000 68999 8
Deletion Chr12 3462001 3479000 16999
Deletion Chr4 3483001 3561000 77999 2
Deletion Chr5 3521001 3548000 26999 3
Deletion Chr11 3527001 3573000 45999 4
Deletion Chr9 3545001 3564000 18999
Deletion Chr12 3556001 3564000 7999
Deletion Chr11 3605001 3661000 55999 14
Deletion Chr9 3610001 3625000 14999
Deletion Chr9 3705001 3727000 21999 OsKitaake09g019400
Deletion Chr5 3733001 3747000 13999 4
Deletion Chr6 3774001 3822000 47999 3
Deletion Chr10 3786001 3800000 13999 OsKitaake10g028900
Deletion Chr9 3811001 3830000 18999 OsKitaake09g020301
Deletion Chr10 3820001 3860000 39999 2
Deletion Chr9 3845001 3861000 15999 2
Deletion Chr4 3895001 3911000 15999
Deletion Chr11 3903001 3945000 41999 5
Deletion Chr9 3911001 3947000 35999 OsKitaake09g020900
Deletion Chr2 3943001 4030000 86999 9
Deletion Chr10 3962001 3980000 17999 OsKitaake10g030000
Deletion Chr9 3984001 4023000 38999 3
Deletion Chr11 3988001 3999000 10999 3
Deletion Chr3 3994001 4029000 34999 4
Deletion Chr1 4073001 4085000 11999 2
Deletion Chr9 4109001 4124000 14999 OsKitaake09g022200
Deletion Chr6 4115001 4144000 28999 2
Deletion Chr8 4167001 4190000 22999 3
Deletion Chr10 4189001 4241000 51999 2
Deletion Chr4 4196001 4211000 14999 2
Deletion Chr12 4219001 4241000 21999 OsKitaake12g057700
Deletion Chr4 4266001 4306000 39999 2
Deletion Chr3 4273001 4289000 15999 5
Deletion Chr7 4284001 4315000 30999 3
Deletion Chr6 4315001 4332000 16999 4
Deletion Chr6 4349001 4366000 16999 4
Deletion Chr12 4387001 4425000 37999 2
Deletion Chr10 4442001 4486000 43999 5
Deletion Chr2 4460001 4475000 14999 2
Deletion Chr7 4493001 4549000 55999 4
Deletion Chr6 4504001 4563000 58999 8
Deletion Chr11 4533001 4567000 33999 2
Deletion Chr8 4568001 4586000 17999 4
Deletion Chr6 4591001 4622000 30999 4
Deletion Chr6 4686001 4704000 17999 2
Deletion Chr10 4706001 4737000 30999 OsKitaake10g034500
Deletion Chr1 4762001 4778000 15999 3
Deletion Chr7 4765001 4820000 54999 6
Deletion Chr12 4789001 4878000 88999 8
Deletion Chr9 4792001 4808000 15999
Deletion Chr10 4821001 4852000 30999 4
Deletion Chr8 4841001 4858000 16999
Deletion Chr4 4862001 4932000 69999 3
Deletion Chr11 4886001 4904000 17999 OsKitaake11g062701
Deletion Chr2 4902001 4919000 16999 5
Deletion Chr10 4927001 4986000 58999 4
Deletion Chr12 5006001 5015000 8999 OsKitaake12g064200
Deletion Chr5 5011001 5036000 24999
Deletion Chr3 5058001 5087000 28999 6
Deletion Chr3 5103001 5119000 15999 3
Deletion Chr11 5107001 5161000 53999 8
Deletion Chr9 5122001 5159000 36999
Deletion Chr8 5145001 5165000 19999
Deletion Chr10 5188001 5208000 19999 OsKitaake10g037400
Deletion Chr12 5229001 5252000 22999 4
Deletion Chr10 5248001 5261000 12999 OsKitaake10g037600
Deletion Chr9 5254001 5289000 34999
Deletion Chr11 5281001 5309000 27999 4
Deletion Chr8 5342001 5370000 27999 OsKitaake08g058100
Deletion Chr5 5352001 5375000 22999
Deletion Chr5 5453001 5477000 23999 4
Deletion Chr7 5455038 5455045 7
Deletion Chr9 5467001 5487000 19999
Deletion Chr6 5517001 5531000 13999 OsKitaake06g073700
Deletion Chr11 5661001 5680000 18999 4
Deletion Chr10 5665001 5685000 19999 OsKitaake10g039200
Deletion Chr4 5671001 5765000 93999 2
Deletion Chr11 5709001 5730000 20999 4
Deletion Chr7 5711001 5741000 29999 5
Deletion Chr11 5770001 5795000 24999 3
Deletion Chr10 5773001 5791000 17999 2
Deletion Chr9 5808001 5818000 9999 OsKitaake09g033500
Deletion Chr8 5866001 5905000 38999 2
Deletion Chr4 5867001 5894000 26999 2
Deletion Chr5 5885001 5914000 28999
Deletion Chr11 5890001 5928000 37999 5
Deletion Chr8 5955001 5974000 18999 2
Deletion Chr11 5981001 6007000 25999 4
Deletion Chr5 5985001 6019000 33999 OsKitaake05g180600
Deletion Chr10 6048001 6060000 11999 3
Deletion Chr2 6059001 6098000 38999 2
Deletion Chr8 6080001 6116000 35999 4
Deletion Chr3 6086001 6100000 13999 2
Deletion Chr4 6090001 6145000 54999 2
Deletion Chr9 6141001 6160000 18999 2
Deletion Chr5 6158001 6169000 10999
Deletion Chr4 6207001 6220000 12999
Deletion Chr2 6257001 6278000 20999 2
Deletion Chr5 6271001 6278000 6999 OsKitaake05g064600
Deletion Chr11 6286001 6331000 44999 OsKitaake11g075400
Deletion Chr2 6300001 6319000 18999 4
Deletion Chr2 6345001 6355000 9999 2
Deletion Chr10 6364001 6375000 10999 OsKitaake10g043200
Deletion Chr2 6384001 6418000 33999 3
Deletion Chr9 6391001 6400000 8999
Deletion Chr12 6393001 6408000 14999 OsKitaake12g073900
Deletion Chr11 6436001 6448000 11999 OsKitaake11g076600
Deletion Chr2 6447001 6463000 15999
Deletion Chr3 6449001 6467000 17999 5
Deletion Chr10 6462001 6488000 25999 5
Deletion Chr12 6472001 6495000 22999 2
Deletion Chr5 6517001 6539000 21999 2
Deletion Chr4 6523001 6564000 40999 OsKitaake04g033200
Deletion Chr4 6586001 6598000 11999 OsKitaake04g033500
Deletion Chr9 6596001 6622000 25999 2
Deletion Chr7 6641001 6701000 59999 7
Deletion Chr12 6656001 6689000 32999 5
Deletion Chr9 6683001 6696000 12999
Deletion Chr12 6715001 6749000 33999
Deletion Chr9 6718001 6732000 13999
Deletion Chr8 6735001 6757000 21999 OsKitaake08g069707
Deletion Chr1 6761001 6773000 11999 4
Deletion Chr12 6768001 6778000 9999
Deletion Chr11 6805001 6816000 10999 OsKitaake11g079855
Deletion Chr7 6809001 6826000 16999 3
Deletion Chr4 6812001 6844000 31999 OsKitaake04g035000
Deletion Chr7 6865001 6888000 22999
Deletion Chr12 6879001 6901000 21999 OsKitaake12g078200
Deletion Chr1 6895001 6918000 22999 6
Deletion Chr8 6905001 6930000 24999
Deletion Chr4 6941001 6957000 15999
Deletion Chr9 6959001 6994000 34999 4
Deletion Chr11 6975001 7018000 42999 4
Deletion Chr7 6977001 6990000 12999 6
Deletion Chr5 6996001 7027000 30999 3
Deletion Chr1 7038001 7060000 21999 3
Deletion Chr10 7051001 7069000 17999 3
Deletion Chr11 7056001 7070000 13999
Deletion Chr9 7160001 7187000 26999 OsKitaake09g041800
Deletion Chr10 7216001 7252000 35999 3
Deletion Chr1 7242001 7271000 28999 3
Deletion Chr4 7267001 7288000 20999
Deletion Chr8 7276001 7307000 30999 2
Deletion Chr7 7318001 7339000 20999
Deletion Chr9 7339001 7357000 17999 OsKitaake09g042001
Deletion Chr7 7374001 7426000 51999 4
Deletion Chr5 7377001 7422000 44999 6
Deletion Chr9 7420001 7496000 75999 3
Deletion Chr10 7431001 7489000 57999 OsKitaake10g048600
Deletion Chr11 7448001 7461000 12999
Deletion Chr7 7480001 7547000 66999 7
Deletion Chr8 7529001 7543000 13999
Deletion Chr9 7568001 7642000 73999 OsKitaake09g043000
Deletion Chr5 7569001 7588000 18999 2
Deletion Chr8 7582001 7633000 50999 OsKitaake08g070700
Deletion Chr11 7584001 7608000 23999 OsKitaake11g085300
Deletion Chr12 7634001 7729000 94999 8
Deletion Chr9 7680001 7697000 16999 OsKitaake09g043400
Deletion Chr10 7720001 7827000 106999 4
Deletion Chr4 7735001 7759000 23999 4
Deletion Chr7 7755001 7822000 66999 4
Deletion Chr11 7760001 7787000 26999 OsKitaake11g086500
Deletion Chr9 7794001 7818000 23999
Deletion Chr12 7809001 7821000 11999 OsKitaake12g083800
Deletion Chr8 7846001 7913000 66999 OsKitaake08g072300
Deletion Chr11 7853001 7867000 13999 OsKitaake11g087100
Deletion Chr12 7898001 7918000 19999
Deletion Chr9 7926001 7939000 12999
Deletion Chr10 7928001 8050000 121999 11
Deletion Chr2 7930001 7946000 15999 2
Deletion Chr2 7962001 7998000 35999
Deletion Chr12 7970001 7985000 14999 OsKitaake12g084550
Deletion Chr11 7991001 8014000 22999 OsKitaake11g088100
Deletion Chr7 8004001 8020000 15999
Deletion Chr3 8018001 8049000 30999 4
Deletion Chr7 8042001 8061000 18999 3
Deletion Chr1 8071001 8092000 20999 OsKitaake01g101200
Deletion Chr2 8097001 8108000 10999 2
Deletion Chr12 8112001 8128000 15999
Deletion Chr3 8133001 8153000 19999 2
Deletion Chr10 8156001 8176000 19999 OsKitaake10g051700
Deletion Chr6 8248001 8286000 37999 5
Deletion Chr9 8250001 8353000 102999 4
Deletion Chr8 8254001 8327000 72999 OsKitaake08g076000
Deletion Chr1 8294001 8307000 12999 7
Deletion Chr7 8298001 8321000 22999 OsKitaake07g090600
Deletion Chr11 8329001 8342000 12999
Deletion Chr4 8333001 8356000 22999
Deletion Chr11 8389001 8402000 12999
Deletion Chr3 8445001 8474000 28999 OsKitaake03g116100
Deletion Chr12 8460001 8471000 10999
Deletion Chr11 8500001 8548000 47999 2
Deletion Chr7 8507001 8532000 24999 2
Deletion Chr8 8589001 8604000 14999
Deletion Chr7 8592001 8612000 19999 OsKitaake07g092250
Deletion Chr5 8593001 8618000 24999
Deletion Chr9 8609001 8628000 18999
Deletion Chr5 8629001 8644000 14999 OsKitaake05g082400
Deletion Chr2 8630001 8650000 19999 2
Deletion Chr1 8645001 8657000 11999
Deletion Chr4 8648001 8657000 8999 OsKitaake04g044100
Deletion Chr8 8668001 8695000 26999 2
Deletion Chr4 8694001 8733000 38999 4
Deletion Chr3 8702001 8720000 17999 5
Deletion Chr6 8704001 8772000 67999 2
Deletion Chr11 8709001 8782000 72999 7
Deletion Chr9 8729001 8750000 20999
Deletion Chr7 8753001 8782000 28999 OsKitaake07g093000
Deletion Chr8 8769001 8782000 12999
Deletion Chr5 8775001 8796000 20999 OsKitaake05g083300
Deletion Chr4 8862001 8890000 27999 OsKitaake04g045800
Deletion Chr11 8868001 8883000 14999 2
Deletion Chr9 8920001 8953000 32999 2
Deletion Chr4 8967001 8983000 15999 2
Deletion Chr10 8975001 9007000 31999 OsKitaake10g053500
Deletion Chr7 8997001 9036000 38999 5
Deletion Chr4 9007001 9021000 13999
Deletion Chr11 9021001 9106000 84999 4
Deletion Chr4 9041001 9102000 60999
Deletion Chr10 9068001 9089000 20999 OsKitaake10g053850
Deletion Chr2 9098001 9109000 10999 OsKitaake02g113800
Deletion Chr11 9163001 9177000 13999 OsKitaake11g096800
Deletion Chr11 9191001 9203000 11999
Deletion Chr1 9209001 9234000 24999 4
Deletion Chr3 9213001 9232000 18999 2
Deletion Chr7 9217001 9233000 15999 OsKitaake07g095400
Deletion Chr12 9232001 9252000 19999
Deletion Chr8 9256001 9271000 14999 2
Deletion Chr10 9260001 9284000 23999
Deletion Chr7 9296001 9316000 19999 OsKitaake07g095900
Deletion Chr6 9327001 9385000 57999 5
Deletion Chr4 9336001 9365000 28999 4
Deletion Chr11 9354001 9376000 21999 2
Deletion Chr1 9366001 9390000 23999 OsKitaake01g120200
Deletion Chr7 9425001 9444000 18999
Deletion Chr8 9494001 9518000 23999
Deletion Chr6 9497001 9509000 11999 2
Deletion Chr4 9522001 9566000 43999 2
Deletion Chr7 9530001 9555000 24999 OsKitaake07g096800
Deletion Chr11 9547001 9646000 98999 4
Deletion Chr5 9578001 9646000 67999 4
Deletion Chr7 9580001 9613000 32999
Deletion Chr4 9632001 9658000 25999
Deletion Chr8 9653001 9669000 15999
Deletion Chr7 9670001 9698000 27999
Deletion Chr12 9727001 9762000 34999
Deletion Chr4 9778001 9792000 13999 OsKitaake04g051600
Deletion Chr6 9807001 9825000 17999
Deletion Chr9 9817001 9907000 89999 3
Deletion Chr11 9823001 9868000 44999 OsKitaake11g101000
Deletion Chr8 9834001 9869000 34999 OsKitaake08g091700
Deletion Chr6 9850001 9887000 36999 OsKitaake06g114600
Deletion Chr2 9867001 9882000 14999 2
Deletion Chr2 9898001 9916000 17999 OsKitaake02g119700
Deletion Chr3 9899001 9923000 23999 4
Deletion Chr5 9917001 9930000 12999 2
Deletion Chr6 9947001 9982000 34999 OsKitaake06g115200
Deletion Chr11 9970001 9993000 22999 OsKitaake11g101701
Deletion Chr2 9972001 9983000 10999 OsKitaake02g120500
Deletion Chr7 9996001 10028000 31999 2
Deletion Chr8 10066001 10094000 27999
Deletion Chr9 10111001 10131000 19999
Deletion Chr8 10120001 10148000 27999
Deletion Chr5 10126001 10155000 28999
Deletion Chr7 10155001 10178000 22999 2
Deletion Chr5 10192001 10209000 16999
Deletion Chr4 10194001 10220000 25999
Deletion Chr10 10203001 10219000 15999 4
Deletion Chr1 10211001 10245000 33999 2
Deletion Chr2 10243001 10260000 16999 OsKitaake02g122700
Deletion Chr7 10261001 10290000 28999 OsKitaake07g100700
Deletion Chr4 10264001 10278000 13999 OsKitaake04g054800
Deletion Chr11 10304001 10338000 33999
Deletion Chr4 10363001 10380000 16999 2
Deletion Chr8 10384001 10415000 30999 OsKitaake08g093500
Deletion Chr1 10416001 10428000 11999
Deletion Chr12 10434001 10461000 26999 3
Deletion Chr9 10461001 10478000 16999 OsKitaake09g065300
Deletion Chr10 10511001 10541000 29999 6
Deletion Chr2 10513001 10611000 97999 8
Deletion Chr11 10515001 10540000 24999 2
Deletion Chr7 10533001 10580000 46999 OsKitaake07g101500
Deletion Chr12 10556001 10576000 19999 3
Deletion Chr11 10564001 10800000 235999 12
Deletion Chr9 10590001 10630000 39999 3
Deletion Chr7 10605001 10628000 22999 OsKitaake07g101700
Deletion Chr4 10614001 10672000 57999 OsKitaake04g055900
Deletion Chr8 10702001 10769000 66999 6
Deletion Chr1 10734001 10751000 16999 OsKitaake01g133000
Deletion Chr4 10749001 10766000 16999
Deletion Chr4 10792001 10812000 19999 2
Deletion Chr7 10796001 10823000 26999
Deletion Chr5 10833001 10852000 18999 OsKitaake05g093100
Deletion Chr9 10839001 10885000 45999 3
Deletion Chr8 10844001 10853000 8999
Deletion Chr4 10848001 10908000 59999
Deletion Chr12 10850001 10866000 15999 4
Deletion Chr6 10863001 10891000 27999 6
Deletion Chr9 10903001 10919000 15999 OsKitaake09g067800
Deletion Chr7 10924001 10939000 14999
Deletion Chr7 10949001 11004000 54999 3
Deletion Chr9 10953001 10965000 11999 OsKitaake09g068100
Deletion Chr6 10965001 10987000 21999 OsKitaake06g122200
Deletion Chr5 10993001 11013000 19999
Deletion Chr3 10998001 11023000 24999 2
Deletion Chr9 11001001 11014000 12999 3
Deletion Chr4 11053001 11068000 14999
Deletion Chr8 11163001 11176000 12999
Deletion Chr1 11168001 11209000 40999 2
Deletion Chr4 11181001 11198000 16999
Deletion Chr3 11221001 11254000 32999 3
Deletion Chr11 11222001 11234000 11999 OsKitaake11g107600
Deletion Chr12 11264001 11286000 21999
Deletion Chr4 11274001 11303000 28999
Deletion Chr8 11280001 11301000 20999
Deletion Chr5 11285001 11299000 13999
Deletion Chr4 11329001 11354000 24999
Deletion Chr10 11332001 11372000 39999 3
Deletion Chr2 11340001 11378000 37999 OsKitaake02g131900
Deletion Chr7 11363001 11373000 9999 2
Deletion Chr5 11378001 11421000 42999 7
Deletion Chr12 11380001 11404000 23999
Deletion Chr4 11437001 11464000 26999
Deletion Chr1 11457001 11480000 22999
Deletion Chr1 11491001 11504000 12999
Deletion Chr5 11540001 11549000 8999 OsKitaake05g095600
Deletion Chr4 11544001 11564000 19999
Deletion Chr6 11547001 11612000 64999
Deletion Chr7 11577001 11593000 15999 OsKitaake07g107600
Deletion Chr2 11627001 11648000 20999 OsKitaake02g134100
Deletion Chr11 11630001 11656000 25999
Deletion Chr3 11672001 11695000 22999 4
Deletion Chr6 11726001 11752000 25999 3
Deletion Chr11 11741001 11758000 16999 OsKitaake11g110100
Deletion Chr8 11772147 11772149 2
Deletion Chr9 11789001 11845000 55999 3
Deletion Chr5 11823001 11832000 8999
Deletion Chr8 11860001 11879000 18999 OsKitaake08g104200
Deletion Chr2 11892001 11910000 17999
Deletion Chr12 11896001 11911000 14999 2
Deletion Chr10 11899001 11924000 24999 OsKitaake10g070900
Deletion Chr1 11901001 11913000 11999
Deletion Chr7 11913001 11967000 53999
Deletion Chr5 11936001 12040000 103999 3
Deletion Chr10 11959001 11986000 26999 3
Deletion Chr12 11982001 11991000 8999 OsKitaake12g104800
Deletion Chr7 12019001 12093000 73999 OsKitaake07g109500
Deletion Chr12 12033001 12055000 21999 OsKitaake12g105100
Deletion Chr8 12039001 12072000 32999
Deletion Chr6 12092001 12110000 17999 OsKitaake06g130600
Deletion Chr7 12110001 12154000 43999
Deletion Chr1 12162001 12185000 22999 OsKitaake01g148300
Deletion Chr7 12185001 12202000 16999 OsKitaake07g109600
Deletion Chr4 12199001 12221000 21999 OsKitaake04g059200
Deletion Chr5 12204001 12230000 25999
Deletion Chr1 12215001 12234000 18999
Deletion Chr5 12252001 12275000 22999
Deletion Chr4 12278001 12360000 81999 6
Deletion Chr3 12288001 12311000 22999
Deletion Chr5 12314001 12389000 74999 2
Deletion Chr2 12329001 12359000 29999 OsKitaake02g139201
Deletion Chr8 12340001 12359000 18999 OsKitaake08g106500
Deletion Chr3 12360001 12372000 11999 OsKitaake03g166400
Deletion Chr6 12368001 12425000 56999 5
Deletion Chr4 12427001 12458000 30999 OsKitaake04g060266
Deletion Chr2 12448001 12462000 13999
Deletion Chr6 12459001 12494000 34999 OsKitaake06g133400
Deletion Chr9 12493001 12529000 35999 2
Deletion Chr8 12517001 12534000 16999 3
Deletion Chr8 12553001 12594000 40999 2
Deletion Chr9 12577001 12589000 11999 OsKitaake09g083000
Deletion Chr10 12727001 12743000 15999 OsKitaake10g077600
Deletion Chr7 12768001 12783000 14999
Deletion Chr11 12783001 12799000 15999
Deletion Chr10 12810001 12843000 32999
Deletion Chr11 12829001 12856000 26999
Deletion Chr7 12851001 12870000 18999 2
Deletion Chr8 12862001 12888000 25999
Deletion Chr2 12934001 12956000 21999 6
Deletion Chr9 12970001 13018000 47999 OsKitaake09g086300
Deletion Chr3 12989001 13019000 29999 5
Deletion Chr11 12990001 13035000 44999 OsKitaake11g114400
Deletion Chr10 12995001 13023000 27999
Deletion Chr9 13068001 13129000 60999 OsKitaake09g086700
Deletion Chr1 13107001 13120000 12999 4
Deletion Chr3 13111001 13125000 13999 2
Deletion Chr7 13114001 13132000 17999 OsKitaake07g115900
Deletion Chr6 13144001 13154000 9999
Deletion Chr8 13186001 13275000 88999 2
Deletion Chr1 13201001 13218000 16999 OsKitaake01g155750
Deletion Chr7 13236001 13297000 60999 9
Deletion Chr12 13252001 13282000 29999 3
Deletion Chr4 13275001 13301000 25999
Deletion Chr7 13301001 13336000 34999 3
Deletion Chr10 13307001 13337000 29999 OsKitaake10g079800
Deletion Chr6 13310001 13336000 25999 2
Deletion Chr10 13352001 13374000 21999
Deletion Chr7 13359001 13380000 20999 2
Deletion Chr11 13410001 13424000 13999 2
Deletion Chr1 13422001 13442000 19999 OsKitaake01g156400
Deletion Chr5 13425001 13445000 19999 2
Deletion Chr11 13439001 13451000 11999 OsKitaake11g115400
Deletion Chr9 13454001 13478000 23999 3
Deletion Chr10 13461001 13476000 14999
Deletion Chr5 13485001 13517000 31999
Deletion Chr1 13498001 13512000 13999 3
Deletion Chr2 13503001 13515000 11999
Deletion Chr6 13504001 13522000 17999
Deletion Chr4 13526001 13691000 164999 13
Deletion Chr10 13538001 13557000 18999 OsKitaake10g081700
Deletion Chr12 13566001 13581000 14999
Deletion Chr11 13568001 13607000 38999 2
Deletion Chr7 13581001 13619000 37999
Deletion Chr5 13588810 13588816 6
Deletion Chr6 13621001 13640000 18999 2
Deletion Chr11 13627001 13643000 15999
Deletion Chr11 13666001 13715000 48999 11
Deletion Chr12 13699001 13721000 21999 OsKitaake12g112900
Deletion Chr2 13702001 13736000 33999 OsKitaake02g150350
Deletion Chr3 13711001 13730000 18999 2
Deletion Chr4 13732001 13750000 17999
Deletion Chr4 13771001 13803000 31999
Deletion Chr5 13787001 13802000 14999 2
Deletion Chr12 13802001 13843000 40999 4
Deletion Chr6 13812001 13836000 23999 2
Deletion Chr5 13830001 13848000 17999 2
Deletion Chr12 13867001 13883000 15999
Deletion Chr6 13885001 13902000 16999 3
Deletion Chr12 13904001 13926000 21999 2
Deletion Chr6 13943001 13977000 33999 3
Deletion Chr4 13954001 13970000 15999 4
Deletion Chr8 13988001 14035000 46999 OsKitaake08g111050
Deletion Chr11 13989001 14002000 12999
Deletion Chr6 14005001 14030000 24999 OsKitaake06g146000
Deletion Chr4 14009001 14038000 28999 OsKitaake04g067250
Deletion Chr5 14015001 14029000 13999 2
Deletion Chr12 14071001 14144000 72999 7
Deletion Chr6 14088001 14157000 68999 6
Deletion Chr7 14109001 14123000 13999 2
Deletion Chr2 14110001 14117000 6999
Deletion Chr3 14159001 14170000 10999
Deletion Chr12 14207001 14234000 26999 OsKitaake12g115500
Deletion Chr1 14221001 14237000 15999 2
Deletion Chr5 14362001 14385000 22999
Deletion Chr8 14391001 14413000 21999 OsKitaake08g113000
Deletion Chr6 14394001 14465000 70999 2
Deletion Chr5 14439001 14460000 20999 2
Deletion Chr7 14442001 14477000 34999 OsKitaake07g123633
Deletion Chr4 14452001 14560000 107999 8
Deletion Chr6 14496001 14527000 30999
Deletion Chr2 14498001 14540000 41999 OsKitaake02g156550
Deletion Chr1 14518001 14532000 13999 4
Deletion Chr5 14536001 14569000 32999 3
Deletion Chr6 14550001 14608000 57999 4
Deletion Chr1 14570001 14593000 22999 6
Deletion Chr2 14585001 14597000 11999
Deletion Chr12 14590001 14605000 14999 OsKitaake12g116900
Deletion Chr5 14624001 14649000 24999 2
Deletion Chr1 14633001 14646000 12999
Deletion Chr1 14684001 14698000 13999 OsKitaake01g166200
Deletion Chr6 14692001 14720000 27999 OsKitaake06g149300
Deletion Chr3 14705001 14731000 25999 5
Deletion Chr7 14706001 14775000 68999 4
Deletion Chr8 14710001 14733000 22999
Deletion Chr5 14718001 14736000 17999
Deletion Chr8 14772001 14794000 21999 2
Deletion Chr5 14804001 14821000 16999 OsKitaake05g112900
Deletion Chr12 14806001 14831000 24999 2
Deletion Chr9 14811001 14831000 19999 OsKitaake09g101500
Deletion Chr2 14827001 14923000 95999 OsKitaake02g157500
Deletion Chr12 15028001 15071000 42999 OsKitaake12g118500
Deletion Chr2 15044001 15059000 14999
Deletion Chr6 15079001 15124000 44999 OsKitaake06g150900
Deletion Chr5 15107001 15134000 26999 7
Deletion Chr2 15113001 15140000 26999 2
Deletion Chr1 15143001 15155000 11999 3
Deletion Chr6 15162001 15219000 56999 5
Deletion Chr2 15166001 15193000 26999 2
Deletion Chr4 15182001 15220000 37999 OsKitaake04g072900
Deletion Chr11 15208001 15228000 19999
Deletion Chr6 15261001 15333000 71999 3
Deletion Chr3 15266001 15300000 33999
Deletion Chr7 15270001 15292000 21999
Deletion Chr7 15300001 15311000 10999 2
Deletion Chr4 15332001 15353000 20999 3
Deletion Chr2 15347001 15434000 86999 3
Deletion Chr1 15411001 15421000 9999
Deletion Chr10 15426001 15443000 16999 2
Deletion Chr6 15454001 15468000 13999 OsKitaake06g152400
Deletion Chr7 15503001 15518000 14999 OsKitaake07g129100
Deletion Chr7 15531001 15544000 12999
Deletion Chr3 15548001 15562000 13999
Deletion Chr8 15551001 15578000 26999 OsKitaake08g120200
Deletion Chr5 15559001 15586000 26999 5
Deletion Chr7 15560001 15601000 40999 4
Deletion Chr6 15600001 15622000 21999
Deletion Chr12 15624001 15646000 21999 3
Deletion Chr7 15627001 15657000 29999
Deletion Chr1 15643001 15674000 30999 4
Deletion Chr5 15646001 15661000 14999 OsKitaake05g119900
Deletion Chr11 15665001 15690000 24999 OsKitaake11g126201
Deletion Chr12 15670001 15693000 22999 OsKitaake12g121300
Deletion Chr12 15707001 15722000 14999
Deletion Chr12 15782001 15823000 40999 OsKitaake12g121900
Deletion Chr11 15798001 15825000 26999 3
Deletion Chr5 15816001 15834000 17999 OsKitaake05g121700
Deletion Chr8 15841001 15871000 29999 OsKitaake08g122300
Deletion Chr11 15844001 15907000 62999 5
Deletion Chr7 15893001 15906000 12999
Deletion Chr2 15912001 15935000 22999 2
Deletion Chr2 15972001 15997000 24999 2
Deletion Chr8 16008001 16077000 68999 5
Deletion Chr12 16009001 16059000 49999 3
Deletion Chr6 16048001 16078000 29999 3
Deletion Chr12 16081001 16106000 24999 OsKitaake12g123450
Deletion Chr5 16098001 16118000 19999 OsKitaake05g123500
Deletion Chr6 16105001 16125000 19999 OsKitaake06g154900
Deletion Chr12 16135001 16167000 31999
Deletion Chr7 16175001 16228000 52999 3
Deletion Chr12 16207001 16220000 12999 OsKitaake12g123600
Deletion Chr2 16231001 16248000 16999 2
Deletion Chr11 16237001 16262000 24999
Deletion Chr1 16242001 16319000 76999 9
Deletion Chr5 16259001 16271000 11999
Deletion Chr11 16284001 16312000 27999 OsKitaake11g129601
Deletion Chr12 16366001 16374000 7999
Deletion Chr8 16390001 16420000 29999
Deletion Chr7 16394001 16413000 18999
Deletion Chr12 16406001 16424000 17999 OsKitaake12g124600
Deletion Chr1 16439001 16468000 28999 2
Deletion Chr6 16443001 16466000 22999
Deletion Chr2 16446001 16469000 22999 3
Deletion Chr3 16481001 16504000 22999 2
Deletion Chr2 16550001 16571000 20999
Deletion Chr7 16585001 16601000 15999 2
Deletion Chr4 16629001 16675000 45999 3
Deletion Chr5 16668001 16697000 28999 2
Deletion Chr7 16685001 16702000 16999
Deletion Chr9 16710001 16726000 15999 4
Deletion Chr11 16718001 16734000 15999
Deletion Chr3 16729001 16752000 22999
Deletion Chr10 16765001 16787000 21999 4
Deletion Chr11 16767001 16781000 13999
Deletion Chr3 16771001 16784000 12999
Deletion Chr12 16776001 16791000 14999 OsKitaake12g125433
Deletion Chr1 16792001 16807000 14999 OsKitaake01g178100
Deletion Chr7 16801249 16801251 2
Deletion Chr7 16822001 16960000 137999 4
Deletion Chr11 16839001 16886000 46999 3
Deletion Chr4 16864001 16888000 23999 OsKitaake04g082700
Deletion Chr8 16885001 16909000 23999 OsKitaake08g128300
Deletion Chr4 16919001 16939000 19999 OsKitaake04g083000
Deletion Chr6 16925001 17016000 90999 3
Deletion Chr2 16988001 17021000 32999
Deletion Chr11 16998001 17010000 11999 OsKitaake11g132900
Deletion Chr8 17024001 17046000 21999
Deletion Chr4 17034001 17053000 18999
Deletion Chr11 17037001 17056000 18999 2
Deletion Chr12 17038001 17047000 8999
Deletion Chr2 17082001 17107000 24999
Deletion Chr10 17118001 17130000 11999
Deletion Chr7 17135001 17153000 17999 OsKitaake07g140200
Deletion Chr11 17168001 17188000 19999 3
Deletion Chr8 17190001 17257000 66999 2
Deletion Chr7 17194001 17215000 20999
Deletion Chr10 17197001 17212000 14999
Deletion Chr2 17243001 17255000 11999 OsKitaake02g173700
Deletion Chr12 17248001 17268000 19999 OsKitaake12g127001
Deletion Chr1 17256001 17275000 18999
Deletion Chr5 17257001 17280000 22999 OsKitaake05g132400
Deletion Chr4 17273001 17300000 26999 OsKitaake04g084700
Deletion Chr10 17276001 17291000 14999 OsKitaake10g118300
Deletion Chr3 17302001 17319000 16999
Deletion Chr2 17350001 17370000 19999 3
Deletion Chr7 17360001 17414000 53999 4
Deletion Chr4 17385001 17424000 38999 5
Deletion Chr2 17399001 17419000 19999 OsKitaake02g175100
Deletion Chr6 17403001 17435000 31999 4
Deletion Chr5 17446001 17470000 23999
Deletion Chr1 17451001 17468000 16999
Deletion Chr7 17497001 17512000 14999
Deletion Chr7 17541001 17579000 37999 OsKitaake07g142400
Deletion Chr10 17553001 17568000 14999 OsKitaake10g120000
Deletion Chr1 17562001 17581000 18999 OsKitaake01g179600
Deletion Chr5 17579001 17613000 33999 3
Deletion Chr6 17633001 17650000 16999 OsKitaake06g163000
Deletion Chr7 17699001 17727000 27999 2
Deletion Chr3 17717001 17732000 14999
Deletion Chr1 17721001 17781000 59999 4
Deletion Chr6 17722001 17754000 31999 OsKitaake06g163600
Deletion Chr9 17753001 17763000 9999 OsKitaake09g134600
Deletion Chr4 17788001 17815000 26999 OsKitaake04g089100
Deletion Chr2 17825001 17902000 76999 2
Deletion Chr6 17868001 17882000 13999 OsKitaake06g164600
Deletion Chr6 17902001 17919000 16999 OsKitaake06g164800
Deletion Chr1 17922001 17941000 18999 4
Deletion Chr8 17986001 18013000 26999 3
Deletion Chr2 18004001 18016000 11999 2
Deletion Chr1 18017001 18039000 21999
Deletion Chr10 18020001 18029000 8999
Deletion Chr2 18060001 18078000 17999 OsKitaake02g179900
Deletion Chr8 18072001 18116000 43999 2
Deletion Chr4 18101001 18114000 12999 OsKitaake04g091200
Deletion Chr12 18128001 18141000 12999 OsKitaake12g133400
Deletion Chr4 18154001 18208000 53999 2
Deletion Chr10 18168001 18200000 31999 4
Deletion Chr12 18205001 18224000 18999
Deletion Chr4 18216001 18313000 96999 5
Deletion Chr11 18270001 18279000 8999 OsKitaake11g142200
Deletion Chr5 18332001 18347000 14999 2
Deletion Chr7 18362001 18388000 25999 2
Deletion Chr8 18385001 18422000 36999 OsKitaake08g136900
Deletion Chr5 18393001 18413000 19999 2
Deletion Chr3 18439001 18498000 58999 7
Deletion Chr10 18570001 18591000 20999
Deletion Chr1 18633001 18651000 17999 OsKitaake01g186800
Deletion Chr8 18684001 18706000 21999 2
Deletion Chr7 18690001 18721000 30999 3
Deletion Chr1 18719001 18747000 27999 4
Deletion Chr11 18760001 18777000 16999 3
Deletion Chr7 18769001 18792000 22999 2
Deletion Chr1 18813001 18831000 17999 6
Deletion Chr12 18814001 18827000 12999
Deletion Chr1 18873001 18897000 23999 3
Deletion Chr12 18878001 18965000 86999 6
Deletion Chr7 18891001 18899000 7999
Deletion Chr11 18902001 18920000 17999
Deletion Chr4 18932001 18946000 13999 4
Deletion Chr11 19030001 19045000 14999
Deletion Chr6 19096001 19166000 69999 8
Deletion Chr3 19202001 19219000 16999
Deletion Chr10 19204001 19247000 42999 3
Deletion Chr8 19245001 19271000 25999
Deletion Chr4 19283001 19296000 12999 OsKitaake04g098200
Deletion Chr6 19294001 19344000 49999 2
Deletion Chr1 19305001 19325000 19999 2
Deletion Chr5 19317001 19356000 38999
Deletion Chr4 19319001 19351000 31999 OsKitaake04g098300
Deletion Chr6 19380001 19402000 21999
Deletion Chr12 19412001 19424000 11999 2
Deletion Chr3 19417001 19460000 42999
Deletion Chr6 19420001 19438000 17999
Deletion Chr9 19485001 19505000 19999 4
Deletion Chr1 19488001 19521000 32999 OsKitaake01g194700
Deletion Chr11 19492001 19507000 14999
Deletion Chr6 19499001 19519000 19999
Deletion Chr7 19500001 19512000 11999
Deletion Chr6 19553001 19631000 77999 4
Deletion Chr4 19561001 19584000 22999 OsKitaake04g101300
Deletion Chr3 19597001 19608000 10999 OsKitaake03g228900
Deletion Chr2 19612001 19633000 20999 4
Deletion Chr4 19652001 19709000 56999 5
Deletion Chr6 19657001 19673000 15999 2
Deletion Chr8 19661001 19711000 49999 4
Deletion Chr2 19683001 19706000 22999 3
Deletion Chr8 19734001 19761000 26999 4
Deletion Chr1 19776001 19806000 29999 2
Deletion Chr5 19829001 19854000 24999 5
Deletion Chr12 19846001 19873000 26999 OsKitaake12g148200
Deletion Chr3 19850001 19909000 58999 OsKitaake03g229400
Deletion Chr2 19921001 19955000 33999 OsKitaake02g194300
Deletion Chr3 19936001 20030000 93999 9
Deletion Chr1 19945001 19967000 21999
Deletion Chr2 20013001 20030000 16999 6
Deletion Chr1 20022001 20044000 21999
Deletion Chr11 20047001 20071000 23999 OsKitaake11g157328
Deletion Chr3 20061001 20083000 21999 OsKitaake03g230201
Deletion Chr3 20128001 20153000 24999
Deletion Chr3 20182001 20200000 17999 OsKitaake03g230400
Deletion Chr2 20198001 20248000 49999 3
Deletion Chr11 20203001 20217000 13999
Deletion Chr3 20278001 20289000 10999
Deletion Chr5 20441001 20470000 28999 OsKitaake05g162800
Deletion Chr12 20450001 20465000 14999
Deletion Chr3 20481001 20511000 29999
Deletion Chr1 20546001 20567000 20999
Deletion Chr8 20574001 20671000 96999 10
Deletion Chr12 20598001 20614000 15999 OsKitaake12g160100
Deletion Chr12 20647001 20665000 17999 2
Deletion Chr4 20682001 20690000 7999
Deletion Chr9 20689001 20752000 62999 8
Deletion Chr6 20722001 20742000 19999
Deletion Chr12 20734708 20734710 2
Deletion Chr3 20745001 20785000 39999 OsKitaake03g232000
Deletion Chr11 20749001 20777000 27999 4
Deletion Chr12 20782001 20798000 15999 2
Deletion Chr2 20799001 20856000 56999 8
Deletion Chr1 20828001 20915000 86999 6
Deletion Chr6 20849001 20885000 35999 3
Deletion Chr5 20855001 20871000 15999 3
Deletion Chr5 20938001 20947000 8999 4
Deletion Chr1 20962001 20989000 26999 2
Deletion Chr4 20970001 20995000 24999
Deletion Chr11 21051001 21070000 18999 3
Deletion Chr6 21081001 21112000 30999 OsKitaake06g187400
Deletion Chr4 21123001 21142000 18999 2
Deletion Chr7 21138001 21157000 18999 3
Deletion Chr1 21154001 21172000 17999
Deletion Chr12 21189001 21200000 10999
Deletion Chr11 21221001 21237000 15999 OsKitaake11g168100
Deletion Chr12 21246001 21356000 109999 5
Deletion Chr8 21276001 21290000 13999
Deletion Chr11 21285001 21323000 37999
Deletion Chr9 21311001 21330000 18999 2
Deletion Chr9 21370001 21389000 18999 4
Deletion Chr7 21374001 21411000 36999 2
Deletion Chr12 21376001 21439000 62999 4
Deletion Chr1 21403001 21415000 11999 OsKitaake01g207764
Deletion Chr7 21453001 21481000 27999 4
Deletion Chr9 21465001 21487000 21999 5
Deletion Chr10 21472001 21487000 14999 2
Deletion Chr3 21483001 21503000 19999 OsKitaake03g236800
Deletion Chr12 21528001 21544000 15999 OsKitaake12g169100
Deletion Chr9 21604001 21614000 9999 OsKitaake09g189700
Deletion Chr2 21618001 21642000 23999
Deletion Chr3 21634001 21652000 17999
Deletion Chr9 21652001 21666000 13999 OsKitaake09g190400
Deletion Chr8 21725001 21766000 40999 7
Deletion Chr6 21746001 21773000 26999
Deletion Chr6 21843001 21862000 18999
Deletion Chr3 21853001 21870000 16999 2
Deletion Chr5 21909001 22010000 100999 13
Deletion Chr7 21933001 21965000 31999 4
Deletion Chr10 21944001 21956000 11999 2
Deletion Chr3 21949001 21960000 10999
Deletion Chr12 21991001 22018000 26999 3
Deletion Chr1 22040001 22055000 14999
Deletion Chr3 22184001 22198000 13999 OsKitaake03g241664
Deletion Chr4 22229001 22246000 16999 OsKitaake04g129900
Deletion Chr6 22406748 22406757 9
Deletion Chr9 22417001 22439000 21999 3
Deletion Chr10 22450001 22463000 12999 4
Deletion Chr12 22466001 22482000 15999 OsKitaake12g176001
Deletion Chr8 22484001 22508000 23999 6
Deletion Chr5 22514001 22542000 27999 6
Deletion Chr3 22534001 22542000 7999 OsKitaake03g244400
Deletion Chr2 22553001 22580000 26999 5
Deletion Chr7 22587001 22693000 105999 13
Deletion Chr3 22590001 22618000 27999 OsKitaake03g245200
Deletion Chr5 22658001 22673000 14999
Deletion Chr1 22680001 22712000 31999 3
Deletion Chr2 22738001 22778000 39999 7
Deletion Chr12 22851001 22875000 23999 4
Deletion Chr7 22899001 22908000 8999 OsKitaake07g197200
Deletion Chr6 22901001 22918000 16999 OsKitaake06g202500
Deletion Chr6 22953001 22973000 19999 OsKitaake06g202900
Deletion Chr11 22983001 23060000 76999 4
Deletion Chr3 23017001 23040000 22999 4
Deletion Chr5 23049001 23075000 25999 2
Deletion Chr4 23128001 23147000 18999
Deletion Chr10 23141001 23161000 19999 OsKitaake10g195250
Deletion Chr1 23250001 23275000 24999 2
Deletion Chr1 23376001 23394000 17999 OsKitaake01g223801
Deletion Chr2 23412001 23433000 20999 4
Deletion Chr6 23449001 23465000 15999 3
Deletion Chr3 23450001 23469000 18999 OsKitaake03g252400
Deletion Chr11 23466001 23508000 41999 5
Deletion Chr3 23481056 23481061 5
Deletion Chr6 23514001 23535000 20999 3
Deletion Chr8 23532001 23553000 20999
Deletion Chr6 23556001 23584000 27999 2
Deletion Chr8 23719001 23742000 22999 OsKitaake08g183200
Deletion Chr4 23757001 23782000 24999 2
Deletion Chr1 23760001 23781000 20999 2
Deletion Chr3 23801001 23841000 39999 3
Deletion Chr1 23819001 23842000 22999
Deletion Chr5 23822001 23836000 13999 2
Deletion Chr11 23859001 23904000 44999 7
Deletion Chr8 23895001 23905000 9999
Deletion Chr3 23921001 23932000 10999
Deletion Chr7 23941001 23962000 20999 4
Deletion Chr6 24012001 24026000 13999 OsKitaake06g213000
Deletion Chr7 24017001 24035000 17999 OsKitaake07g212300
Deletion Chr1 24026001 24046000 19999 OsKitaake01g231000
Deletion Chr1 24075001 24099000 23999 OsKitaake01g231400
Deletion Chr12 24118001 24135000 16999 OsKitaake12g194000
Deletion Chr2 24144001 24190000 45999 10
Deletion Chr1 24184001 24199000 14999 4
Deletion Chr1 24222001 24243000 20999 3
Deletion Chr6 24237001 24268000 30999
Deletion Chr8 24243001 24259000 15999 OsKitaake08g187600
Deletion Chr8 24387001 24427000 39999 2
Deletion Chr2 24406001 24431000 24999
Deletion Chr4 24417001 24441000 23999 4
Deletion Chr2 24586001 24604000 17999 3
Deletion Chr8 24612001 24629000 16999 3
Deletion Chr5 24621001 24642000 20999 2
Deletion Chr6 24626001 24640000 13999 OsKitaake06g218300
Deletion Chr3 24772001 24802000 29999
Deletion Chr6 25038001 25116000 77999 10
Deletion Chr11 25069001 25158000 88999 8
Deletion Chr3 25178001 25202000 23999 OsKitaake03g266600
Deletion Chr11 25199001 25212000 12999
Deletion Chr3 25250001 25264000 13999 OsKitaake03g267000
Deletion Chr11 25254001 25270000 15999 OsKitaake11g203075
Deletion Chr5 25279001 25297000 17999 OsKitaake05g220500
Deletion Chr5 25339001 25366000 26999 4
Deletion Chr11 25357001 25389000 31999 8
Deletion Chr11 25420001 25467000 46999 7
Deletion Chr4 25445001 25464000 18999 3
Deletion Chr2 25520001 25583000 62999 8
Deletion Chr7 25533001 25548000 14999 4
Deletion Chr8 25568001 25597000 28999 7
Deletion Chr12 25605001 25633000 27999 4
Deletion Chr11 25607001 25631000 23999 6
Deletion Chr2 25611001 25621000 9999 5
Deletion Chr7 25733001 25748000 14999 2
Deletion Chr7 25795001 25814000 18999 2
Deletion Chr2 25821001 25843000 21999
Deletion Chr12 25823001 25849000 25999
Deletion Chr11 25847001 25876000 28999
Deletion Chr11 25942001 25957000 14999 3
Deletion Chr1 25962001 25982000 19999
Deletion Chr4 25978001 25996000 17999 3
Deletion Chr1 25994001 26009000 14999 3
Deletion Chr7 26073001 26096000 22999
Deletion Chr11 26207001 26232000 24999 OsKitaake11g211700
Deletion Chr4 26319001 26346000 26999 2
Deletion Chr5 26339001 26404000 64999 8
Deletion Chr3 26376001 26396000 19999 2
Deletion Chr11 26383001 26453000 69999 17
Deletion Chr6 26386001 26398000 11999 6
Deletion Chr12 26387001 26425000 37999
Deletion Chr11 26469001 26495000 25999
Deletion Chr7 26521001 26562000 40999 4
Deletion Chr7 26599001 26695000 95999 12
Deletion Chr5 26608001 26625000 16999 6
Deletion Chr3 26628001 26664000 35999
Deletion Chr4 26714001 26734000 19999 3
Deletion Chr6 26772449 26772453 4
Deletion Chr3 26810001 26828000 17999
Deletion Chr1 26844001 26855000 10999 2
Deletion Chr3 26944001 26955000 10999
Deletion Chr4 26949001 26995000 45999 7
Deletion Chr1 26993001 27021000 27999 5
Deletion Chr11 27057001 27095000 37999 8
Deletion Chr5 27091001 27121000 29999 11
Deletion Chr4 27123001 27140000 16999 2
Deletion Chr11 27126001 27149000 22999 2
Deletion Chr6 27239001 27260000 20999 2
Deletion Chr3 27242001 27262000 19999
Deletion Chr4 27247001 27271000 23999 OsKitaake04g198500
Deletion Chr7 27264001 27276000 11999
Deletion Chr11 27285001 27312000 26999 OsKitaake11g223300
Deletion Chr7 27324001 27407000 82999 3
Deletion Chr4 27332001 27368000 35999 6
Deletion Chr8 27333001 27369000 35999 2
Deletion Chr6 27393001 27403000 9999 OsKitaake06g247300
Deletion Chr7 27465001 27489000 23999 3
Deletion Chr8 27507001 27523000 15999 OsKitaake08g227557
Deletion Chr11 27598001 27620000 21999 OsKitaake11g224900
Deletion Chr2 27631001 27649000 17999
Deletion Chr7 27715001 27756000 40999 4
Deletion Chr3 27748001 27764000 15999 OsKitaake03g286800
Deletion Chr7 27817001 27865000 47999 8
Deletion Chr5 28061001 28088000 26999 4
Deletion Chr6 28077001 28097000 19999 2
Deletion Chr8 28150001 28163000 12999 4
Deletion Chr2 28186001 28231000 44999 3
Deletion Chr8 28275001 28307000 31999 4
Deletion Chr11 28357001 28391000 33999
Deletion Chr7 28377001 28392000 14999 6
Deletion Chr6 28437001 28455000 17999 2
Deletion Chr7 28637001 28651000 13999 OsKitaake07g272800
Deletion Chr8 28683001 28693000 9999 2
Deletion Chr11 28688001 28700000 11999
Deletion Chr3 28760001 28776000 15999 2
Deletion Chr5 28848001 28869000 20999
Deletion Chr1 28879001 28897000 17999 4
Deletion Chr4 28881001 28904000 22999 4
Deletion Chr8 28914001 28931000 16999 OsKitaake08g249900
Deletion Chr4 28977001 28991000 13999 3
Deletion Chr3 29071001 29086000 14999 3
Deletion Chr7 29076001 29097000 20999 7
Deletion Chr3 29140001 29156000 15999 4
Deletion Chr1 29147001 29172000 24999 7
Deletion Chr11 29318001 29354000 35999
Deletion Chr3 29319001 29384000 64999 9
Deletion Chr1 29336001 29359000 22999 8
Deletion Chr5 29463001 29493000 29999
Deletion Chr1 29503001 29520000 16999 2
Deletion Chr3 29507001 29516000 8999
Deletion Chr4 29523001 29549000 25999 OsKitaake04g226500
Deletion Chr4 29669001 29687000 17999 2
Deletion Chr5 29681001 29694000 12999
Deletion Chr2 29721001 29736000 14999 3
Deletion Chr3 29790001 29835000 44999 4
Deletion Chr2 29809001 29842000 32999 3
Deletion Chr2 30004001 30023000 18999 OsKitaake02g304600
Deletion Chr4 30013001 30036000 22999 3
Deletion Chr1 30194001 30212000 17999 2
Deletion Chr1 30235001 30257000 21999 3
Deletion Chr2 30464001 30477000 12999 OsKitaake02g310700
Deletion Chr3 30590001 30613000 22999 OsKitaake03g321500
Deletion Chr4 30712001 30739000 26999 3
Deletion Chr3 30742001 30758000 15999
Deletion Chr1 30830001 30852000 21999 4
Deletion Chr2 30858001 30878000 19999 OsKitaake02g314900
Deletion Chr1 30872001 30890000 17999 6
Deletion Chr4 30987001 31002000 14999
Deletion Chr6 31024001 31042000 17999
Deletion Chr2 31033001 31049000 15999 OsKitaake02g317000
Deletion Chr4 31141001 31158000 16999 OsKitaake04g243000
Deletion Chr4 31352001 31382000 29999 6
Deletion Chr4 31660960 31660962 2
Deletion Chr1 31795001 31816000 20999 6
Deletion Chr4 31888001 31922000 33999 5
Deletion Chr2 31948001 31963000 14999 2
Deletion Chr4 32011001 32056000 44999 4
Deletion Chr1 32027001 32044000 16999 OsKitaake01g322800
Deletion Chr2 32099001 32127000 27999 2
Deletion Chr3 32120001 32146000 25999 5
Deletion Chr2 32173001 32188000 14999 OsKitaake02g328900
Deletion Chr4 32186001 32223000 36999 6
Deletion Chr3 32406001 32427000 20999 2
Deletion Chr4 32866001 32891000 24999 5
Deletion Chr1 32886001 32917000 30999 7
Deletion Chr4 32903001 32916000 12999 OsKitaake04g266200
Deletion Chr1 33029001 33075000 45999 5
Deletion Chr4 33100001 33123000 22999 3
Deletion Chr1 33197001 33226000 28999 8
Deletion Chr1 33291001 33339000 47999 10
Deletion Chr1 33401001 33424000 22999 7
Deletion Chr1 33446001 33474000 27999 2
Deletion Chr4 33479001 33506000 26999 4
Deletion Chr4 33643021 33643022 1
Deletion Chr1 33675001 33701000 25999 7
Deletion Chr4 34144001 34167000 22999
Deletion Chr2 34247001 34270000 22999 2
Deletion Chr2 34461001 34476000 14999
Deletion Chr2 35045001 35053000 7999 4
Deletion Chr1 35064001 35107000 42999 2
Deletion Chr1 35261001 35278000 16999 OsKitaake01g371500
Deletion Chr4 35371001 35425000 53999 8
Deletion Chr4 35494001 35507000 12999 3
Deletion Chr3 35705001 35723000 17999 2
Deletion Chr3 35832001 35871000 38999 13
Deletion Chr4 35857001 35886000 28999 6
Deletion Chr1 35868001 35889000 20999 OsKitaake01g380200
Deletion Chr2 35947001 36038000 90999 10
Deletion Chr3 36025001 36037000 11999 3
Deletion Chr4 36155001 36170000 14999 2
Deletion Chr1 36287001 36300000 12999 2
Deletion Chr3 36533001 36552000 18999 6
Deletion Chr4 36577001 36595000 17999 2
Deletion Chr1 36852001 36876000 23999 6
Deletion Chr1 37017001 37029000 11999
Deletion Chr2 37143001 37165000 21999 OsKitaake02g398900
Deletion Chr3 37428001 37444000 15999
Deletion Chr1 37606001 37625000 18999 3
Deletion Chr1 37747001 37786000 38999 5
Deletion Chr1 38104001 38144000 39999 5
Deletion Chr1 38837001 38850000 12999 4
Deletion Chr1 39746001 39781000 34999 8
Deletion Chr1 41349001 41368000 18999
Deletion Chr1 41391001 41409000 17999 OsKitaake01g452100
Deletion Chr1 41921001 41935000 13999 OsKitaake01g459400
Deletion Chr1 41990001 42024000 33999 5
Deletion Chr1 42195001 42218000 22999 6
Deletion Chr1 42732001 42755000 22999 OsKitaake01g471100

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20847101 20847104 2
Insertion Chr3 4426704 4426708 3
Insertion Chr7 28702050 28702053 2
Insertion Chr8 10603253 10603258 4
Insertion Chr9 8372244 8372247 2
Insertion Chr10 3686685 3686688 2
Insertion Chr12 7804097 7804100 2
Insertion Chr4 14012247 14012249 1
Insertion Chr5 30226856 30226864 7
Insertion Chr5 30232136 30232144 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10578795 10887893 OsKitaake11g104900
Inversion Chr11 10578810 10979883 OsKitaake11g104900
Inversion Chr6 14794062 15177708

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18857169 Chr7 28574408 2
Translocation Chr9 18857181 Chr7 28573346 2
Translocation Chr7 28618971 Chr2 3942938 OsKitaake02g056600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3012523	G-A	Hetero	INTERGENIC
SBS	Chr1	12468214	C-T	Hetero	INTERGENIC
SBS	Chr1	16740856	G-T	Hetero	INTERGENIC
SBS	Chr1	29662105	G-A	Homo	INTERGENIC
SBS	Chr1	36878408	G-A	Homo	UTR_3_PRIME
SBS	Chr2	1199143	C-A	Homo	INTRON
SBS	Chr2	25206597	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g248201
SBS	Chr2	26041404	G-A	Homo	INTERGENIC
SBS	Chr2	29918000	A-G	Hetero	INTERGENIC
SBS	Chr2	33795886	C-T	Hetero	INTERGENIC
SBS	Chr2	36012626	C-T	Hetero	INTRON
SBS	Chr3	11837264	T-C	Hetero	INTERGENIC
SBS	Chr3	19574246	T-A	Hetero	INTERGENIC
SBS	Chr3	22077465	G-A	Hetero	INTERGENIC
SBS	Chr3	22077559	T-G	Hetero	INTERGENIC
SBS	Chr3	22077609	A-G	Hetero	INTERGENIC
SBS	Chr3	36443181	C-T	Homo	UTR_3_PRIME
SBS	Chr4	7729903	G-A	Homo	INTERGENIC
SBS	Chr4	14374535	A-C	Homo	INTERGENIC
SBS	Chr4	14374536	G-T	Homo	INTERGENIC
SBS	Chr4	16554847	A-C	Hetero	INTERGENIC
SBS	Chr4	27927056	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g206900
SBS	Chr4	35520071	C-A	Hetero	UTR_5_PRIME
SBS	Chr5	6046256	G-T	Hetero	INTERGENIC
SBS	Chr5	19635650	A-C	Homo	INTERGENIC
SBS	Chr5	19892000	G-A	Homo	INTRON
SBS	Chr5	20271448	C-T	Homo	INTERGENIC
SBS	Chr6	10611060	C-T	Hetero	INTERGENIC
SBS	Chr6	17644732	G-A	Hetero	INTERGENIC
SBS	Chr6	24276186	G-A	Hetero	INTERGENIC
SBS	Chr7	16927728	G-A	Hetero	INTERGENIC
SBS	Chr7	20711178	A-T	Homo	INTERGENIC
SBS	Chr8	3449957	T-A	Hetero	INTERGENIC
SBS	Chr8	16780751	C-T	Homo	INTERGENIC
SBS	Chr8	20488000	G-C	Homo	INTERGENIC
SBS	Chr8	21259413	C-T	Homo	INTERGENIC
SBS	Chr9	623255	G-A	Hetero	INTERGENIC
SBS	Chr9	1269672	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g007900
SBS	Chr9	2147750	C-T	Hetero	INTERGENIC
SBS	Chr9	2192399	G-A	Hetero	INTERGENIC
SBS	Chr9	2795698	T-A	Hetero	INTRON
SBS	Chr9	7483183	G-A	Hetero	INTERGENIC
SBS	Chr9	15880434	T-G	Homo	INTERGENIC
SBS	Chr9	18933201	C-T	Homo	INTRON
SBS	Chr9	21877459	C-A	Homo	INTERGENIC
SBS	Chr10	1367485	C-G	Hetero	INTERGENIC
SBS	Chr10	2437290	G-T	Hetero	INTERGENIC
SBS	Chr10	17376112	C-T	Homo	INTERGENIC
SBS	Chr11	13703780	G-A	Hetero	INTERGENIC
SBS	Chr11	24920214	G-A	Homo	INTERGENIC
SBS	Chr12	14455523	C-G	Hetero	INTERGENIC
SBS	Chr12	18267624	C-T	Homo	INTERGENIC
SBS	Chr12	27055543	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	20847101	20847104	2
Insertion	Chr3	4426704	4426708	3
Insertion	Chr7	28702050	28702053	2
Insertion	Chr8	10603253	10603258	4
Insertion	Chr9	8372244	8372247	2
Insertion	Chr10	3686685	3686688	2
Insertion	Chr12	7804097	7804100	2
Insertion	Chr4	14012247	14012249	1
Insertion	Chr5	30226856	30226864	7
Insertion	Chr5	30232136	30232144	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10578795	10887893	OsKitaake11g104900
Inversion	Chr11	10578810	10979883	OsKitaake11g104900
Inversion	Chr6	14794062	15177708

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes