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| Mutant Information |
|---|
| Mutant Name | FN3129-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3129-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19524012 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 22211523 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 25207736 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 31270788 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32117323 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g323600 |
| SBS | Chr1 | 38054390 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5891300 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17339942 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 20676107 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 347929 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31089357 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35685479 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 1213583 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 26840779 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29106773 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 33711710 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 16687723 | T-C | Homo | INTRON | |
| SBS | Chr5 | 17479451 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 19863759 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 6329035 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17688076 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17948552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20089173 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20447532 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 29262178 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g255000 |
| SBS | Chr9 | 1527620 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 7995311 | A-C | Homo | INTRON | |
| SBS | Chr10 | 18205534 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18364151 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18364162 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 7271901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7290941 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 16903513 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25219875 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 26183555 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 14586415 | G-A | Hetero | INTRON |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 19480533 | 19480534 | 1 | |
| Deletion | Chr11 | 20553062 | 20553068 | 6 | |
| Deletion | Chr8 | 28019005 | 28019007 | 2 | |
| Deletion | Chr5 | 29280690 | 29280692 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 9948985 | 9948988 | 2 | |
| Insertion | Chr3 | 13053394 | 13053402 | 7 | |
| Insertion | Chr6 | 1417137 | 1417140 | 2 | |
| Insertion | Chr8 | 4847970 | 4847973 | 2 |