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Mutant Information

Mutant Name	FN3132-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3132-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2510712 C-T Hetero INTERGENIC
SBS Chr1 3527609 A-G Hetero INTERGENIC
SBS Chr1 10531761 A-G Homo INTERGENIC
SBS Chr1 21489775 C-T Homo INTERGENIC
SBS Chr1 44238776 G-T Homo INTRON
SBS Chr2 9842960 G-A Homo INTERGENIC
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr2 29061079 G-A Hetero INTERGENIC
SBS Chr3 4596240 A-G Hetero INTERGENIC
SBS Chr3 7277033 T-A Hetero INTRON
SBS Chr3 8631915 G-A Homo UTR_3_PRIME
SBS Chr3 30882179 A-G Homo INTERGENIC
SBS Chr4 10139408 C-T Homo INTERGENIC
SBS Chr4 12715668 G-A Hetero INTERGENIC
SBS Chr4 19995113 C-A Homo INTRON
SBS Chr4 23465691 C-T Homo INTERGENIC
SBS Chr4 27471646 C-T Hetero INTERGENIC
SBS Chr4 34982268 T-G Homo INTERGENIC
SBS Chr4 36880438 C-T Homo INTRON
SBS Chr5 7523552 G-A Hetero INTERGENIC
SBS Chr5 8290792 A-G Hetero INTERGENIC
SBS Chr5 13525415 T-A Hetero INTERGENIC
SBS Chr5 13525416 C-T Hetero INTERGENIC
SBS Chr5 28279394 A-G Hetero INTERGENIC
SBS Chr6 3899219 T-C Hetero SYNONYMOUS_CODING
SBS Chr6 12908805 C-G Hetero INTRON
SBS Chr6 22660803 G-A Hetero INTERGENIC
SBS Chr7 8834572 A-C Homo INTERGENIC
SBS Chr7 9819168 C-T Hetero INTERGENIC
SBS Chr7 15917935 A-G Hetero INTERGENIC
SBS Chr7 18106203 G-A Hetero INTRON
SBS Chr7 19239998 A-T Hetero UTR_3_PRIME
SBS Chr8 1873804 C-T Hetero INTERGENIC
SBS Chr8 4119750 T-A Hetero INTRON
SBS Chr8 7038759 G-T Hetero INTERGENIC
SBS Chr8 14377867 A-T Homo INTRON
SBS Chr8 28614545 G-A Hetero INTRON
SBS Chr9 4678943 C-T Hetero INTERGENIC
SBS Chr9 13553663 G-A Hetero INTERGENIC
SBS Chr9 13767699 T-G Hetero INTERGENIC
SBS Chr10 697879 C-A Hetero INTRON
SBS Chr10 2986607 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g024500
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr10 15063796 A-C Homo INTERGENIC
SBS Chr10 16597236 A-G Homo UTR_3_PRIME
SBS Chr10 17940199 C-T Hetero INTERGENIC
SBS Chr11 422646 A-C Hetero INTERGENIC
SBS Chr11 555737 G-A Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 29353902 T-C Hetero INTERGENIC
SBS Chr12 2972331 T-G Homo INTERGENIC
SBS Chr12 18324079 G-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1154565 1154570 5
Deletion Chr12 3337816 3337825 9
Deletion Chr6 5145097 5145104 7
Deletion Chr2 5438557 5438559 2
Deletion Chr7 5715638 5715639 1
Deletion Chr3 6386898 6386900 2
Deletion Chr5 7992438 7992444 6
Deletion Chr3 9304413 9304414 1
Deletion Chr12 10879079 10879086 7
Deletion Chr4 11785298 11785312 14
Deletion Chr7 13130229 13130230 1
Deletion Chr5 13935924 13935929 5
Deletion Chr7 14119764 14119765 1
Deletion Chr10 15065320 15065334 14
Deletion Chr2 16206805 16206807 2
Deletion Chr7 16732280 16732281 1
Deletion Chr9 17655547 17655553 6
Deletion Chr6 20408336 20408338 2 OsKitaake06g182300
Deletion Chr6 24040222 24040223 1
Deletion Chr2 24946801 24946821 20
Deletion Chr2 26640001 26695000 54999 7
Deletion Chr2 36632243 36632253 10

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13548064 13548066 1
Insertion Chr4 4619492 4619495 2
Insertion Chr5 353330 353333 2
Insertion Chr9 19668113 19668116 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 23289045 23541225
Inversion Chr7 23289057 23541226

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2510712	C-T	Hetero	INTERGENIC
SBS	Chr1	3527609	A-G	Hetero	INTERGENIC
SBS	Chr1	10531761	A-G	Homo	INTERGENIC
SBS	Chr1	21489775	C-T	Homo	INTERGENIC
SBS	Chr1	44238776	G-T	Homo	INTRON
SBS	Chr2	9842960	G-A	Homo	INTERGENIC
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr2	29061079	G-A	Hetero	INTERGENIC
SBS	Chr3	4596240	A-G	Hetero	INTERGENIC
SBS	Chr3	7277033	T-A	Hetero	INTRON
SBS	Chr3	8631915	G-A	Homo	UTR_3_PRIME
SBS	Chr3	30882179	A-G	Homo	INTERGENIC
SBS	Chr4	10139408	C-T	Homo	INTERGENIC
SBS	Chr4	12715668	G-A	Hetero	INTERGENIC
SBS	Chr4	19995113	C-A	Homo	INTRON
SBS	Chr4	23465691	C-T	Homo	INTERGENIC
SBS	Chr4	27471646	C-T	Hetero	INTERGENIC
SBS	Chr4	34982268	T-G	Homo	INTERGENIC
SBS	Chr4	36880438	C-T	Homo	INTRON
SBS	Chr5	7523552	G-A	Hetero	INTERGENIC
SBS	Chr5	8290792	A-G	Hetero	INTERGENIC
SBS	Chr5	13525415	T-A	Hetero	INTERGENIC
SBS	Chr5	13525416	C-T	Hetero	INTERGENIC
SBS	Chr5	28279394	A-G	Hetero	INTERGENIC
SBS	Chr6	3899219	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	12908805	C-G	Hetero	INTRON
SBS	Chr6	22660803	G-A	Hetero	INTERGENIC
SBS	Chr7	8834572	A-C	Homo	INTERGENIC
SBS	Chr7	9819168	C-T	Hetero	INTERGENIC
SBS	Chr7	15917935	A-G	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Hetero	INTRON
SBS	Chr7	19239998	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	1873804	C-T	Hetero	INTERGENIC
SBS	Chr8	4119750	T-A	Hetero	INTRON
SBS	Chr8	7038759	G-T	Hetero	INTERGENIC
SBS	Chr8	14377867	A-T	Homo	INTRON
SBS	Chr8	28614545	G-A	Hetero	INTRON
SBS	Chr9	4678943	C-T	Hetero	INTERGENIC
SBS	Chr9	13553663	G-A	Hetero	INTERGENIC
SBS	Chr9	13767699	T-G	Hetero	INTERGENIC
SBS	Chr10	697879	C-A	Hetero	INTRON
SBS	Chr10	2986607	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g024500
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr10	15063796	A-C	Homo	INTERGENIC
SBS	Chr10	16597236	A-G	Homo	UTR_3_PRIME
SBS	Chr10	17940199	C-T	Hetero	INTERGENIC
SBS	Chr11	422646	A-C	Hetero	INTERGENIC
SBS	Chr11	555737	G-A	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	29353902	T-C	Hetero	INTERGENIC
SBS	Chr12	2972331	T-G	Homo	INTERGENIC
SBS	Chr12	18324079	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1154565	1154570	5
Deletion	Chr12	3337816	3337825	9
Deletion	Chr6	5145097	5145104	7
Deletion	Chr2	5438557	5438559	2
Deletion	Chr7	5715638	5715639	1
Deletion	Chr3	6386898	6386900	2
Deletion	Chr5	7992438	7992444	6
Deletion	Chr3	9304413	9304414	1
Deletion	Chr12	10879079	10879086	7
Deletion	Chr4	11785298	11785312	14
Deletion	Chr7	13130229	13130230	1
Deletion	Chr5	13935924	13935929	5
Deletion	Chr7	14119764	14119765	1
Deletion	Chr10	15065320	15065334	14
Deletion	Chr2	16206805	16206807	2
Deletion	Chr7	16732280	16732281	1
Deletion	Chr9	17655547	17655553	6
Deletion	Chr6	20408336	20408338	2	OsKitaake06g182300
Deletion	Chr6	24040222	24040223	1
Deletion	Chr2	24946801	24946821	20
Deletion	Chr2	26640001	26695000	54999	7
Deletion	Chr2	36632243	36632253	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23289045	23541225
Inversion	Chr7	23289057	23541226

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes