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Mutant Information

Mutant Name	FN3134-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3134-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12777256 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 17879959 C-G Homo INTERGENIC
SBS Chr2 18712609 C-T Homo INTERGENIC
SBS Chr3 6885540 C-T Homo INTRON
SBS Chr3 10669840 T-A Hetero INTRON
SBS Chr3 10669841 C-A Hetero INTRON
SBS Chr3 26694330 T-G Hetero INTERGENIC
SBS Chr3 34361572 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g372700
SBS Chr4 1897385 C-A Hetero INTERGENIC
SBS Chr4 6984824 A-G Hetero INTERGENIC
SBS Chr4 33384020 C-T Homo INTERGENIC
SBS Chr5 7494580 A-G Hetero INTRON
SBS Chr5 11577525 G-T Hetero INTERGENIC
SBS Chr6 7562632 A-G Hetero INTERGENIC
SBS Chr6 10274584 T-A Hetero INTERGENIC
SBS Chr6 12795362 C-T Hetero INTERGENIC
SBS Chr6 25633954 A-T Hetero INTRON
SBS Chr7 18752697 A-T Homo INTERGENIC
SBS Chr7 23267178 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g202200
SBS Chr8 3811299 G-A Homo INTERGENIC
SBS Chr8 8116785 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g074300
SBS Chr8 15003883 C-T Hetero INTERGENIC
SBS Chr8 15345279 A-G Hetero INTERGENIC
SBS Chr8 17305375 G-T Hetero INTERGENIC
SBS Chr9 6765809 C-A Hetero INTERGENIC
SBS Chr9 15002560 T-C Homo INTERGENIC
SBS Chr9 16123551 C-A Hetero INTERGENIC
SBS Chr9 19630129 C-T Hetero INTERGENIC
SBS Chr11 9945379 T-A Hetero INTERGENIC
SBS Chr11 21979969 T-C Hetero INTERGENIC
SBS Chr12 3353677 C-T Homo INTERGENIC
SBS Chr12 9366813 A-C Hetero INTERGENIC
SBS Chr12 13233087 G-A Homo INTERGENIC
SBS Chr12 13233091 G-A Homo INTERGENIC
SBS Chr12 13233095 T-A Homo INTERGENIC
SBS Chr12 15090003 G-T Hetero INTERGENIC
SBS Chr12 25825536 C-A Hetero INTERGENIC
SBS Chr12 26555616 C-T Hetero SYNONYMOUS_CODING

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3289774 3289792 18
Deletion Chr7 4481694 4481695 1
Deletion Chr7 5874108 5874119 11
Deletion Chr12 13344926 13344927 1
Deletion Chr1 17628168 17628170 2
Deletion Chr4 17935954 17935955 1
Deletion Chr7 20254431 20254453 22
Deletion Chr5 24324980 24324990 10
Deletion Chr6 24544070 24544072 2
Deletion Chr3 25279348 25279360 12
Deletion Chr3 36850356 36850359 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 12874351 12874354 2
Insertion Chr12 12611391 12611394 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 14458033 14632537 OsKitaake06g149050
Inversion Chr6 14458038 14632545 OsKitaake06g149050

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 23319376 Chr2 32514967

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12777256	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	17879959	C-G	Homo	INTERGENIC
SBS	Chr2	18712609	C-T	Homo	INTERGENIC
SBS	Chr3	6885540	C-T	Homo	INTRON
SBS	Chr3	10669840	T-A	Hetero	INTRON
SBS	Chr3	10669841	C-A	Hetero	INTRON
SBS	Chr3	26694330	T-G	Hetero	INTERGENIC
SBS	Chr3	34361572	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g372700
SBS	Chr4	1897385	C-A	Hetero	INTERGENIC
SBS	Chr4	6984824	A-G	Hetero	INTERGENIC
SBS	Chr4	33384020	C-T	Homo	INTERGENIC
SBS	Chr5	7494580	A-G	Hetero	INTRON
SBS	Chr5	11577525	G-T	Hetero	INTERGENIC
SBS	Chr6	7562632	A-G	Hetero	INTERGENIC
SBS	Chr6	10274584	T-A	Hetero	INTERGENIC
SBS	Chr6	12795362	C-T	Hetero	INTERGENIC
SBS	Chr6	25633954	A-T	Hetero	INTRON
SBS	Chr7	18752697	A-T	Homo	INTERGENIC
SBS	Chr7	23267178	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g202200
SBS	Chr8	3811299	G-A	Homo	INTERGENIC
SBS	Chr8	8116785	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g074300
SBS	Chr8	15003883	C-T	Hetero	INTERGENIC
SBS	Chr8	15345279	A-G	Hetero	INTERGENIC
SBS	Chr8	17305375	G-T	Hetero	INTERGENIC
SBS	Chr9	6765809	C-A	Hetero	INTERGENIC
SBS	Chr9	15002560	T-C	Homo	INTERGENIC
SBS	Chr9	16123551	C-A	Hetero	INTERGENIC
SBS	Chr9	19630129	C-T	Hetero	INTERGENIC
SBS	Chr11	9945379	T-A	Hetero	INTERGENIC
SBS	Chr11	21979969	T-C	Hetero	INTERGENIC
SBS	Chr12	3353677	C-T	Homo	INTERGENIC
SBS	Chr12	9366813	A-C	Hetero	INTERGENIC
SBS	Chr12	13233087	G-A	Homo	INTERGENIC
SBS	Chr12	13233091	G-A	Homo	INTERGENIC
SBS	Chr12	13233095	T-A	Homo	INTERGENIC
SBS	Chr12	15090003	G-T	Hetero	INTERGENIC
SBS	Chr12	25825536	C-A	Hetero	INTERGENIC
SBS	Chr12	26555616	C-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3289774	3289792	18
Deletion	Chr7	4481694	4481695	1
Deletion	Chr7	5874108	5874119	11
Deletion	Chr12	13344926	13344927	1
Deletion	Chr1	17628168	17628170	2
Deletion	Chr4	17935954	17935955	1
Deletion	Chr7	20254431	20254453	22
Deletion	Chr5	24324980	24324990	10
Deletion	Chr6	24544070	24544072	2
Deletion	Chr3	25279348	25279360	12
Deletion	Chr3	36850356	36850359	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14458033	14632537	OsKitaake06g149050
Inversion	Chr6	14458038	14632545	OsKitaake06g149050

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes