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Mutant Information

Mutant Name	FN3135-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3135-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4048471 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g054600
SBS Chr1 8100103 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g101400
SBS Chr1 11343488 A-C Hetero INTERGENIC
SBS Chr1 29158702 G-A Hetero INTERGENIC
SBS Chr1 30617929 T-C Homo INTERGENIC
SBS Chr1 35390422 G-A Hetero INTRON
SBS Chr1 36054301 A-G Hetero INTERGENIC
SBS Chr1 42446862 A-G Hetero INTERGENIC
SBS Chr2 3395747 T-C Hetero INTERGENIC
SBS Chr2 3395748 C-T Hetero INTERGENIC
SBS Chr2 17963993 G-T Hetero INTRON
SBS Chr2 26778682 G-A Hetero INTERGENIC
SBS Chr2 33639260 C-T Homo INTERGENIC
SBS Chr3 1798470 C-T Hetero UTR_3_PRIME
SBS Chr3 2309457 G-A Hetero INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 24020766 G-A Hetero INTERGENIC
SBS Chr3 24020767 C-T Hetero INTERGENIC
SBS Chr3 24597616 G-A Hetero INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr4 11866365 C-T Homo INTERGENIC
SBS Chr4 23090274 G-T Hetero INTERGENIC
SBS Chr4 25678012 G-A Hetero INTERGENIC
SBS Chr5 3521677 A-G Hetero INTRON
SBS Chr5 10770610 T-C Hetero INTERGENIC
SBS Chr5 14349454 A-C Hetero SPLICE_SITE_REGION
SBS Chr5 15398854 C-A Hetero INTERGENIC
SBS Chr5 27351607 C-T Hetero INTERGENIC
SBS Chr6 3850281 C-A Hetero INTERGENIC
SBS Chr6 14679507 G-A Hetero INTERGENIC
SBS Chr6 21895157 C-A Hetero INTERGENIC
SBS Chr6 21895158 T-A Hetero INTERGENIC
SBS Chr6 23669521 G-A Hetero INTERGENIC
SBS Chr6 23909174 C-G Hetero INTRON
SBS Chr6 27879265 A-G Hetero INTERGENIC
SBS Chr7 28663480 A-T Homo INTERGENIC
SBS Chr8 751833 G-A Hetero INTRON
SBS Chr9 4171459 G-A Hetero INTERGENIC
SBS Chr9 4951060 C-T Hetero INTERGENIC
SBS Chr10 8872269 C-G Homo INTERGENIC
SBS Chr10 22091800 A-G Hetero INTERGENIC
SBS Chr11 1359749 A-T Homo INTRON
SBS Chr11 2985249 C-G Homo INTERGENIC
SBS Chr11 5827149 G-A Homo INTERGENIC
SBS Chr11 21623614 A-T Homo INTRON
SBS Chr11 25294637 G-A Homo INTERGENIC
SBS Chr12 5466153 A-T Hetero INTERGENIC
SBS Chr12 7557688 G-A Hetero INTERGENIC
SBS Chr12 9518454 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2050008 2050020 12
Deletion Chr5 3994001 4014000 19999 5
Deletion Chr5 4016001 4060000 43999 5
Deletion Chr6 5628535 5628538 3
Deletion Chr6 9772905 9772913 8
Deletion Chr6 12046716 12046719 3
Deletion Chr3 21535934 21535944 10
Deletion Chr11 21623587 21623588 1
Deletion Chr11 22992047 22992055 8
Deletion Chr11 23167958 23167968 10
Deletion Chr8 25056836 25056853 17
Deletion Chr8 25198380 25198390 10
Deletion Chr8 25877302 25877310 8 OsKitaake08g205600
Deletion Chr4 27110001 27273000 162999 13
Deletion Chr11 28666157 28666158 1 OsKitaake11g234800
Deletion Chr2 32803296 32803299 3
Deletion Chr3 33941679 33941695 16
Deletion Chr4 34069971 34069976 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 35554031 35554034 2
Insertion Chr11 16991160 16991163 2
Insertion Chr11 29598358 29598361 2
Insertion Chr12 18860795 18860798 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4244119 Chr6 24167306
Translocation Chr9 10685820 Chr3 24095940

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4048471	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g054600
SBS	Chr1	8100103	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g101400
SBS	Chr1	11343488	A-C	Hetero	INTERGENIC
SBS	Chr1	29158702	G-A	Hetero	INTERGENIC
SBS	Chr1	30617929	T-C	Homo	INTERGENIC
SBS	Chr1	35390422	G-A	Hetero	INTRON
SBS	Chr1	36054301	A-G	Hetero	INTERGENIC
SBS	Chr1	42446862	A-G	Hetero	INTERGENIC
SBS	Chr2	3395747	T-C	Hetero	INTERGENIC
SBS	Chr2	3395748	C-T	Hetero	INTERGENIC
SBS	Chr2	17963993	G-T	Hetero	INTRON
SBS	Chr2	26778682	G-A	Hetero	INTERGENIC
SBS	Chr2	33639260	C-T	Homo	INTERGENIC
SBS	Chr3	1798470	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	2309457	G-A	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	24020766	G-A	Hetero	INTERGENIC
SBS	Chr3	24020767	C-T	Hetero	INTERGENIC
SBS	Chr3	24597616	G-A	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr4	11866365	C-T	Homo	INTERGENIC
SBS	Chr4	23090274	G-T	Hetero	INTERGENIC
SBS	Chr4	25678012	G-A	Hetero	INTERGENIC
SBS	Chr5	3521677	A-G	Hetero	INTRON
SBS	Chr5	10770610	T-C	Hetero	INTERGENIC
SBS	Chr5	14349454	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr5	15398854	C-A	Hetero	INTERGENIC
SBS	Chr5	27351607	C-T	Hetero	INTERGENIC
SBS	Chr6	3850281	C-A	Hetero	INTERGENIC
SBS	Chr6	14679507	G-A	Hetero	INTERGENIC
SBS	Chr6	21895157	C-A	Hetero	INTERGENIC
SBS	Chr6	21895158	T-A	Hetero	INTERGENIC
SBS	Chr6	23669521	G-A	Hetero	INTERGENIC
SBS	Chr6	23909174	C-G	Hetero	INTRON
SBS	Chr6	27879265	A-G	Hetero	INTERGENIC
SBS	Chr7	28663480	A-T	Homo	INTERGENIC
SBS	Chr8	751833	G-A	Hetero	INTRON
SBS	Chr9	4171459	G-A	Hetero	INTERGENIC
SBS	Chr9	4951060	C-T	Hetero	INTERGENIC
SBS	Chr10	8872269	C-G	Homo	INTERGENIC
SBS	Chr10	22091800	A-G	Hetero	INTERGENIC
SBS	Chr11	1359749	A-T	Homo	INTRON
SBS	Chr11	2985249	C-G	Homo	INTERGENIC
SBS	Chr11	5827149	G-A	Homo	INTERGENIC
SBS	Chr11	21623614	A-T	Homo	INTRON
SBS	Chr11	25294637	G-A	Homo	INTERGENIC
SBS	Chr12	5466153	A-T	Hetero	INTERGENIC
SBS	Chr12	7557688	G-A	Hetero	INTERGENIC
SBS	Chr12	9518454	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2050008	2050020	12
Deletion	Chr5	3994001	4014000	19999	5
Deletion	Chr5	4016001	4060000	43999	5
Deletion	Chr6	5628535	5628538	3
Deletion	Chr6	9772905	9772913	8
Deletion	Chr6	12046716	12046719	3
Deletion	Chr3	21535934	21535944	10
Deletion	Chr11	21623587	21623588	1
Deletion	Chr11	22992047	22992055	8
Deletion	Chr11	23167958	23167968	10
Deletion	Chr8	25056836	25056853	17
Deletion	Chr8	25198380	25198390	10
Deletion	Chr8	25877302	25877310	8	OsKitaake08g205600
Deletion	Chr4	27110001	27273000	162999	13
Deletion	Chr11	28666157	28666158	1	OsKitaake11g234800
Deletion	Chr2	32803296	32803299	3
Deletion	Chr3	33941679	33941695	16
Deletion	Chr4	34069971	34069976	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4244119	Chr6	24167306
Translocation	Chr9	10685820	Chr3	24095940

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes