Search Kitaake

Mutant Information

Mutant Name	FN3142-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3142-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7754535 C-T Hetero INTERGENIC
SBS Chr1 13944006 G-A Hetero INTERGENIC
SBS Chr1 16575755 T-C Homo UTR_5_PRIME
SBS Chr1 33894493 A-G Hetero INTERGENIC
SBS Chr2 1404481 A-C Hetero SPLICE_SITE_REGION
SBS Chr2 4835120 G-C Hetero INTERGENIC
SBS Chr2 18666708 G-A Homo INTERGENIC
SBS Chr2 25400380 A-G Hetero INTERGENIC
SBS Chr2 30882625 C-T Hetero INTERGENIC
SBS Chr3 6198275 G-C Hetero INTERGENIC
SBS Chr4 6407444 G-C Hetero INTERGENIC
SBS Chr4 15667255 T-C Hetero INTERGENIC
SBS Chr4 16139420 G-T Hetero INTERGENIC
SBS Chr4 16139651 A-C Hetero INTERGENIC
SBS Chr4 16641756 T-C Hetero INTRON
SBS Chr4 18068065 T-C Hetero INTERGENIC
SBS Chr4 34405373 A-G Hetero INTRON
SBS Chr5 17520101 A-T Homo INTERGENIC
SBS Chr5 23973797 G-A Hetero INTERGENIC
SBS Chr6 13486452 C-T Hetero INTERGENIC
SBS Chr6 13486453 A-C Hetero INTERGENIC
SBS Chr6 13486458 C-T Hetero INTERGENIC
SBS Chr6 17420153 A-C Hetero INTERGENIC
SBS Chr6 30416192 C-T Hetero INTERGENIC
SBS Chr6 30416193 C-T Hetero INTERGENIC
SBS Chr7 2295679 G-A Hetero INTERGENIC
SBS Chr7 5103362 C-A Hetero INTERGENIC
SBS Chr7 5715518 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g069700
SBS Chr7 7083703 C-T Hetero INTERGENIC
SBS Chr7 9472765 C-T Hetero INTERGENIC
SBS Chr7 9472766 C-T Hetero INTERGENIC
SBS Chr7 18918881 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g153600
SBS Chr8 11454180 G-A Hetero INTERGENIC
SBS Chr8 16299883 C-T Hetero INTERGENIC
SBS Chr9 13032728 G-A Hetero INTERGENIC
SBS Chr9 17411345 G-T Homo INTERGENIC
SBS Chr10 2441417 G-C Hetero INTERGENIC
SBS Chr10 7104109 G-A Hetero INTERGENIC
SBS Chr10 9971010 G-A Hetero INTERGENIC
SBS Chr10 14102006 A-T Hetero INTERGENIC
SBS Chr11 16780905 A-T Hetero INTERGENIC
SBS Chr11 16857438 A-C Homo INTERGENIC
SBS Chr12 4061991 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g055300
SBS Chr12 6073554 T-C Hetero INTERGENIC
SBS Chr12 8109347 G-A Hetero INTERGENIC
SBS Chr12 13337690 A-G Homo INTERGENIC
SBS Chr12 22564956 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 652001 777000 124999 25
Deletion Chr4 3711255 3711267 12
Deletion Chr7 4443161 4443165 4
Deletion Chr11 5436782 5436791 9
Deletion Chr12 10544720 10544737 17
Deletion Chr4 14135173 14135175 2
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr3 22141917 22141919 2
Deletion Chr3 34754333 34754334 1
Deletion Chr1 36224446 36224454 8
Deletion Chr1 36997639 36997642 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35295165 35295172 6
Insertion Chr4 1441514 1441517 2
Insertion Chr4 25840582 25840584 1
Insertion Chr9 12356754 12356757 2
Insertion Chr10 18668359 18668362 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 12643582 13139373
Inversion Chr3 24353826 24481304 OsKitaake03g261600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4230840 Chr7 28732896
Translocation Chr10 4230908 Chr7 28732494
Translocation Chr12 13360192 Chr6 13917284 OsKitaake12g111100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7754535	C-T	Hetero	INTERGENIC
SBS	Chr1	13944006	G-A	Hetero	INTERGENIC
SBS	Chr1	16575755	T-C	Homo	UTR_5_PRIME
SBS	Chr1	33894493	A-G	Hetero	INTERGENIC
SBS	Chr2	1404481	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr2	4835120	G-C	Hetero	INTERGENIC
SBS	Chr2	18666708	G-A	Homo	INTERGENIC
SBS	Chr2	25400380	A-G	Hetero	INTERGENIC
SBS	Chr2	30882625	C-T	Hetero	INTERGENIC
SBS	Chr3	6198275	G-C	Hetero	INTERGENIC
SBS	Chr4	6407444	G-C	Hetero	INTERGENIC
SBS	Chr4	15667255	T-C	Hetero	INTERGENIC
SBS	Chr4	16139420	G-T	Hetero	INTERGENIC
SBS	Chr4	16139651	A-C	Hetero	INTERGENIC
SBS	Chr4	16641756	T-C	Hetero	INTRON
SBS	Chr4	18068065	T-C	Hetero	INTERGENIC
SBS	Chr4	34405373	A-G	Hetero	INTRON
SBS	Chr5	17520101	A-T	Homo	INTERGENIC
SBS	Chr5	23973797	G-A	Hetero	INTERGENIC
SBS	Chr6	13486452	C-T	Hetero	INTERGENIC
SBS	Chr6	13486453	A-C	Hetero	INTERGENIC
SBS	Chr6	13486458	C-T	Hetero	INTERGENIC
SBS	Chr6	17420153	A-C	Hetero	INTERGENIC
SBS	Chr6	30416192	C-T	Hetero	INTERGENIC
SBS	Chr6	30416193	C-T	Hetero	INTERGENIC
SBS	Chr7	2295679	G-A	Hetero	INTERGENIC
SBS	Chr7	5103362	C-A	Hetero	INTERGENIC
SBS	Chr7	5715518	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g069700
SBS	Chr7	7083703	C-T	Hetero	INTERGENIC
SBS	Chr7	9472765	C-T	Hetero	INTERGENIC
SBS	Chr7	9472766	C-T	Hetero	INTERGENIC
SBS	Chr7	18918881	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g153600
SBS	Chr8	11454180	G-A	Hetero	INTERGENIC
SBS	Chr8	16299883	C-T	Hetero	INTERGENIC
SBS	Chr9	13032728	G-A	Hetero	INTERGENIC
SBS	Chr9	17411345	G-T	Homo	INTERGENIC
SBS	Chr10	2441417	G-C	Hetero	INTERGENIC
SBS	Chr10	7104109	G-A	Hetero	INTERGENIC
SBS	Chr10	9971010	G-A	Hetero	INTERGENIC
SBS	Chr10	14102006	A-T	Hetero	INTERGENIC
SBS	Chr11	16780905	A-T	Hetero	INTERGENIC
SBS	Chr11	16857438	A-C	Homo	INTERGENIC
SBS	Chr12	4061991	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g055300
SBS	Chr12	6073554	T-C	Hetero	INTERGENIC
SBS	Chr12	8109347	G-A	Hetero	INTERGENIC
SBS	Chr12	13337690	A-G	Homo	INTERGENIC
SBS	Chr12	22564956	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	652001	777000	124999	25
Deletion	Chr4	3711255	3711267	12
Deletion	Chr7	4443161	4443165	4
Deletion	Chr11	5436782	5436791	9
Deletion	Chr12	10544720	10544737	17
Deletion	Chr4	14135173	14135175	2
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr3	22141917	22141919	2
Deletion	Chr3	34754333	34754334	1
Deletion	Chr1	36224446	36224454	8
Deletion	Chr1	36997639	36997642	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12643582	13139373
Inversion	Chr3	24353826	24481304	OsKitaake03g261600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes