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Mutant Information

Mutant Name	FN3145-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3145-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32956013 T-A Hetero INTRON
SBS Chr1 32956014 C-T Hetero INTRON
SBS Chr1 40852961 C-T Hetero INTRON
SBS Chr2 8793645 C-T Hetero INTERGENIC
SBS Chr2 33380471 G-A Homo SYNONYMOUS_CODING
SBS Chr3 2342079 T-C Homo INTERGENIC
SBS Chr3 16454371 A-G Hetero UTR_3_PRIME
SBS Chr3 18325686 G-A Homo INTERGENIC
SBS Chr3 36564591 G-T Hetero INTERGENIC
SBS Chr3 36564592 C-T Hetero INTERGENIC
SBS Chr4 1920826 A-T Homo INTERGENIC
SBS Chr4 9948989 G-C Hetero INTERGENIC
SBS Chr4 11653292 T-G Homo INTERGENIC
SBS Chr4 31513597 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g247800
SBS Chr4 34940039 A-T Hetero INTERGENIC
SBS Chr4 35957572 T-C Hetero INTERGENIC
SBS Chr5 4590128 A-T Hetero INTERGENIC
SBS Chr5 11627236 C-T Hetero INTERGENIC
SBS Chr5 17261854 A-T Hetero INTERGENIC
SBS Chr5 28713981 G-T Hetero INTERGENIC
SBS Chr6 534301 C-A Hetero INTRON
SBS Chr6 8746979 G-T Hetero INTERGENIC
SBS Chr6 16966518 A-T Hetero INTRON
SBS Chr6 20112196 G-C Homo INTERGENIC
SBS Chr6 27744658 A-G Hetero INTERGENIC
SBS Chr7 12950714 T-C Hetero INTERGENIC
SBS Chr7 13104147 G-T Hetero INTERGENIC
SBS Chr7 14418013 G-A Hetero INTERGENIC
SBS Chr7 17583605 C-T Hetero INTERGENIC
SBS Chr7 18633029 G-A Hetero INTERGENIC
SBS Chr7 23419849 C-T Hetero INTERGENIC
SBS Chr8 4088301 G-A Hetero INTERGENIC
SBS Chr8 11106292 G-T Hetero UTR_3_PRIME
SBS Chr8 11106293 C-G Hetero UTR_3_PRIME
SBS Chr8 14811686 C-A Hetero INTERGENIC
SBS Chr8 19215544 T-C Hetero INTERGENIC
SBS Chr8 24044084 G-A Hetero INTERGENIC
SBS Chr8 24149599 G-A Hetero INTERGENIC
SBS Chr8 28488601 G-A Hetero INTERGENIC
SBS Chr9 5782018 G-A Hetero INTRON
SBS Chr9 8032712 T-C Homo INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 11332014 G-A Hetero INTERGENIC
SBS Chr11 13620610 G-A Hetero INTERGENIC
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr11 15766914 G-T Hetero INTERGENIC
SBS Chr11 16319020 T-A Hetero INTERGENIC
SBS Chr11 18924903 G-C Hetero INTRON
SBS Chr11 25473152 G-A Hetero INTERGENIC
SBS Chr12 1242987 C-T Hetero INTERGENIC
SBS Chr12 4643303 G-A Hetero INTERGENIC
SBS Chr12 13975444 C-T Hetero INTERGENIC
SBS Chr12 17529116 C-T Hetero INTERGENIC
SBS Chr12 17529121 A-T Hetero INTERGENIC
SBS Chr12 18379894 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3622995 3622996 1
Deletion Chr4 4104360 4104361 1
Deletion Chr5 4266500 4266502 2
Deletion Chr10 6322001 6371000 48999 3
Deletion Chr3 8724374 8724384 10
Deletion Chr3 11170487 11170492 5
Deletion Chr1 11521001 11546000 24999 4
Deletion Chr3 11811185 11811188 3 OsKitaake03g160500
Deletion Chr1 15194500 15194506 6
Deletion Chr10 17806001 17828000 21999 4
Deletion Chr10 18119500 18119511 11
Deletion Chr5 22632001 22647000 14999 OsKitaake05g186200
Deletion Chr5 23832164 23832165 1
Deletion Chr4 25194895 25194896 1
Deletion Chr3 27001590 27001596 6
Deletion Chr12 27138261 27138264 3
Deletion Chr2 28314700 28314702 2
Deletion Chr2 29387703 29387704 1
Deletion Chr1 34285001 34298000 12999 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40532503 40532506 2
Insertion Chr2 14475430 14475433 2
Insertion Chr3 22964776 22964779 2
Insertion Chr7 18842522 18842525 2
Insertion Chr9 14647933 14647936 2
Insertion Chr10 11947046 11947051 4
Insertion Chr12 17566882 17566887 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 388821 1361051 OsKitaake05g017000
Inversion Chr1 11268739 11516004

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 18260276 Chr1 27995175
Translocation Chr3 18260281 Chr1 27995320
Translocation Chr2 29996559 Chr1 11268722 OsKitaake02g304500
Translocation Chr2 29996582 Chr1 11267259 OsKitaake02g304500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32956013	T-A	Hetero	INTRON
SBS	Chr1	32956014	C-T	Hetero	INTRON
SBS	Chr1	40852961	C-T	Hetero	INTRON
SBS	Chr2	8793645	C-T	Hetero	INTERGENIC
SBS	Chr2	33380471	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	2342079	T-C	Homo	INTERGENIC
SBS	Chr3	16454371	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	18325686	G-A	Homo	INTERGENIC
SBS	Chr3	36564591	G-T	Hetero	INTERGENIC
SBS	Chr3	36564592	C-T	Hetero	INTERGENIC
SBS	Chr4	1920826	A-T	Homo	INTERGENIC
SBS	Chr4	9948989	G-C	Hetero	INTERGENIC
SBS	Chr4	11653292	T-G	Homo	INTERGENIC
SBS	Chr4	31513597	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g247800
SBS	Chr4	34940039	A-T	Hetero	INTERGENIC
SBS	Chr4	35957572	T-C	Hetero	INTERGENIC
SBS	Chr5	4590128	A-T	Hetero	INTERGENIC
SBS	Chr5	11627236	C-T	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Hetero	INTERGENIC
SBS	Chr5	28713981	G-T	Hetero	INTERGENIC
SBS	Chr6	534301	C-A	Hetero	INTRON
SBS	Chr6	8746979	G-T	Hetero	INTERGENIC
SBS	Chr6	16966518	A-T	Hetero	INTRON
SBS	Chr6	20112196	G-C	Homo	INTERGENIC
SBS	Chr6	27744658	A-G	Hetero	INTERGENIC
SBS	Chr7	12950714	T-C	Hetero	INTERGENIC
SBS	Chr7	13104147	G-T	Hetero	INTERGENIC
SBS	Chr7	14418013	G-A	Hetero	INTERGENIC
SBS	Chr7	17583605	C-T	Hetero	INTERGENIC
SBS	Chr7	18633029	G-A	Hetero	INTERGENIC
SBS	Chr7	23419849	C-T	Hetero	INTERGENIC
SBS	Chr8	4088301	G-A	Hetero	INTERGENIC
SBS	Chr8	11106292	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	11106293	C-G	Hetero	UTR_3_PRIME
SBS	Chr8	14811686	C-A	Hetero	INTERGENIC
SBS	Chr8	19215544	T-C	Hetero	INTERGENIC
SBS	Chr8	24044084	G-A	Hetero	INTERGENIC
SBS	Chr8	24149599	G-A	Hetero	INTERGENIC
SBS	Chr8	28488601	G-A	Hetero	INTERGENIC
SBS	Chr9	5782018	G-A	Hetero	INTRON
SBS	Chr9	8032712	T-C	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	11332014	G-A	Hetero	INTERGENIC
SBS	Chr11	13620610	G-A	Hetero	INTERGENIC
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr11	15766914	G-T	Hetero	INTERGENIC
SBS	Chr11	16319020	T-A	Hetero	INTERGENIC
SBS	Chr11	18924903	G-C	Hetero	INTRON
SBS	Chr11	25473152	G-A	Hetero	INTERGENIC
SBS	Chr12	1242987	C-T	Hetero	INTERGENIC
SBS	Chr12	4643303	G-A	Hetero	INTERGENIC
SBS	Chr12	13975444	C-T	Hetero	INTERGENIC
SBS	Chr12	17529116	C-T	Hetero	INTERGENIC
SBS	Chr12	17529121	A-T	Hetero	INTERGENIC
SBS	Chr12	18379894	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3622995	3622996	1
Deletion	Chr4	4104360	4104361	1
Deletion	Chr5	4266500	4266502	2
Deletion	Chr10	6322001	6371000	48999	3
Deletion	Chr3	8724374	8724384	10
Deletion	Chr3	11170487	11170492	5
Deletion	Chr1	11521001	11546000	24999	4
Deletion	Chr3	11811185	11811188	3	OsKitaake03g160500
Deletion	Chr1	15194500	15194506	6
Deletion	Chr10	17806001	17828000	21999	4
Deletion	Chr10	18119500	18119511	11
Deletion	Chr5	22632001	22647000	14999	OsKitaake05g186200
Deletion	Chr5	23832164	23832165	1
Deletion	Chr4	25194895	25194896	1
Deletion	Chr3	27001590	27001596	6
Deletion	Chr12	27138261	27138264	3
Deletion	Chr2	28314700	28314702	2
Deletion	Chr2	29387703	29387704	1
Deletion	Chr1	34285001	34298000	12999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	388821	1361051	OsKitaake05g017000
Inversion	Chr1	11268739	11516004

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes