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| Mutant Information |
|---|
| Mutant Name | FN3146-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3146-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1878693 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 14013810 | G-C | Homo | INTRON | |
| SBS | Chr1 | 16908633 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 39426069 | G-A | Homo | SPLICE_SITE_REGION | |
| SBS | Chr1 | 39807695 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g430700 |
| SBS | Chr1 | 39807696 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 43487255 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 18596910 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18030318 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 21022821 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 21022822 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 26799709 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7719298 | T-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr4 | 17456766 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 30151830 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 8859126 | G-A | Homo | INTRON | |
| SBS | Chr6 | 4062276 | C-G | Hetero | START_GAINED | |
| SBS | Chr6 | 5627150 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11258466 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 18132907 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 25365729 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16550080 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18722038 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 6033577 | A-T | Homo | INTRON | |
| SBS | Chr8 | 6033578 | G-T | Homo | INTRON | |
| SBS | Chr10 | 22241470 | A-G | Homo | INTRON | |
| SBS | Chr11 | 4626673 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g060700 |
| SBS | Chr11 | 5489212 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4501843 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6592114 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10288614 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13719389 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15222649 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16083009 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16891469 | A-C | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 8668041 | 8668050 | 9 | |
| Deletion | Chr7 | 11996537 | 11997045 | 508 | |
| Deletion | Chr3 | 20046701 | 20046856 | 155 |
Insertions: 7