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Mutant Information |
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Mutant Name | FN3147-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3147-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 272034 | G-A | Hetero | INTERGENIC | |
SBS | Chr1 | 14200522 | T-G | Hetero | INTRON | |
SBS | Chr1 | 21974061 | T-G | Hetero | INTRON | |
SBS | Chr1 | 22383824 | A-T | Hetero | INTRON | |
SBS | Chr2 | 8090700 | A-T | Hetero | INTRON | |
SBS | Chr2 | 24152863 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g238000 |
SBS | Chr2 | 24626484 | T-A | Hetero | UTR_5_PRIME | |
SBS | Chr2 | 25202161 | T-G | Hetero | INTERGENIC | |
SBS | Chr2 | 33741866 | T-C | Hetero | INTERGENIC | |
SBS | Chr2 | 36662442 | C-A | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake02g390800 |
SBS | Chr3 | 16730383 | G-A | Homo | INTERGENIC | |
SBS | Chr3 | 26292598 | T-C | Homo | INTERGENIC | |
SBS | Chr3 | 36935433 | A-T | Homo | INTRON | |
SBS | Chr4 | 26820434 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 14361407 | T-G | Hetero | INTERGENIC | |
SBS | Chr6 | 11051860 | A-C | Hetero | INTERGENIC | |
SBS | Chr6 | 14985879 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 20273638 | A-C | Hetero | INTERGENIC | |
SBS | Chr7 | 22840047 | C-T | Hetero | INTERGENIC | |
SBS | Chr8 | 7049254 | G-A | Homo | INTERGENIC | |
SBS | Chr8 | 17751878 | T-A | Homo | INTERGENIC | |
SBS | Chr8 | 21252799 | T-G | Hetero | INTERGENIC | |
SBS | Chr10 | 5743251 | G-A | Homo | INTERGENIC | |
SBS | Chr10 | 9100375 | C-T | Homo | INTERGENIC | |
SBS | Chr10 | 10524016 | A-G | Homo | INTERGENIC | |
SBS | Chr12 | 10350116 | T-C | Hetero | INTRON | |
SBS | Chr12 | 12429984 | T-A | Hetero | INTERGENIC | |
SBS | Chr12 | 12429985 | C-A | Hetero | INTERGENIC | |
SBS | Chr12 | 12429986 | T-A | Hetero | INTERGENIC | |
SBS | Chr12 | 26406294 | C-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr11 | 380160 | 380169 | 9 | OsKitaake11g003700 |
Deletion | Chr2 | 4194913 | 4194916 | 3 | |
Deletion | Chr10 | 11660904 | 11660912 | 8 | |
Deletion | Chr8 | 15592787 | 15592804 | 17 | |
Deletion | Chr4 | 17443001 | 17591000 | 147999 | 16 |
Deletion | Chr4 | 17765001 | 17832000 | 66999 | OsKitaake04g089100 |
Deletion | Chr12 | 18720001 | 19071000 | 350999 | 28 |
Deletion | Chr6 | 22169323 | 22169327 | 4 | |
Deletion | Chr6 | 25150421 | 25150423 | 2 | |
Deletion | Chr3 | 35853031 | 35853053 | 22 | |
Deletion | Chr2 | 36086732 | 36086733 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 41466522 | 41466527 | 4 | |
Insertion | Chr1 | 43985976 | 43985979 | 2 | |
Insertion | Chr8 | 14127168 | 14127171 | 2 |
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr12 | 5536421 | 5637246 | |
Inversion | Chr12 | 5536432 | 5637254 | |
Inversion | Chr6 | 14960749 | 14989026 | |
Inversion | Chr6 | 14960781 | 14989033 | |
Inversion | Chr10 | 16231218 | 16236518 | OsKitaake10g109300 |
Inversion | Chr4 | 17444232 | 17767799 | |
Inversion | Chr7 | 17579337 | 18551020 | |
Inversion | Chr7 | 18551012 | 18616569 | |
Inversion | Chr5 | 27535941 | 27638264 | OsKitaake05g252400 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr10 | 16231223 | Chr9 | 4140517 | OsKitaake10g109300 |
Translocation | Chr7 | 18616577 | Chr2 | 18846397 | OsKitaake02g184800 |
Translocation | Chr7 | 18616841 | Chr2 | 18846395 | OsKitaake02g184800 |
Translocation | Chr7 | 18616870 | Chr5 | 6180299 |