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| Mutant Information |
|---|
| Mutant Name | FN3150-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3150-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1940191 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13190818 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22139043 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34764182 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4905428 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7096883 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 16475588 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 294756 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31927634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2089179 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3984123 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 4259402 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4259403 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11381504 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13487320 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 30007574 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22238084 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24924534 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 27682471 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 8629322 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 29197226 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 2684704 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16023470 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23767839 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5127251 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10918158 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 19663541 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 11292839 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 11292840 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1452858 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 23305836 | C-A | Hetero | INTRON |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 44902 | 44903 | 1 | |
| Deletion | Chr10 | 5242180 | 5242189 | 9 | |
| Deletion | Chr7 | 10268465 | 10268467 | 2 | |
| Deletion | Chr7 | 13814644 | 13814646 | 2 | |
| Deletion | Chr10 | 18436567 | 18436569 | 2 | |
| Deletion | Chr6 | 20253724 | 20253731 | 7 | OsKitaake06g180900 |
| Deletion | Chr12 | 23883611 | 23883620 | 9 | |
| Deletion | Chr12 | 24112359 | 24112368 | 9 | |
| Deletion | Chr12 | 24780285 | 24780292 | 7 | |
| Deletion | Chr5 | 27549001 | 27576000 | 26999 | 3 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 26340394 | 26340398 | 3 | |
| Insertion | Chr1 | 39913062 | 39913065 | 2 | |
| Insertion | Chr3 | 28516409 | 28516412 | 2 | |
| Insertion | Chr8 | 23776240 | 23776243 | 2 | |
| Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635  |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 27549597 | 27640960 | |
| Inversion | Chr3 | 32582476 | 32699657 | 2 |
| Inversion | Chr3 | 32582478 | 32702075 | 2 |