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Mutant Information

Mutant Name	FN3151-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3151-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 534898 C-T Hetero INTERGENIC
SBS Chr1 1146687 C-A Hetero INTERGENIC
SBS Chr1 8785282 T-G Hetero INTERGENIC
SBS Chr1 9936316 C-T Hetero INTERGENIC
SBS Chr1 28014706 T-A Homo INTRON
SBS Chr1 29427413 A-T Hetero INTERGENIC
SBS Chr2 23084403 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g225900
SBS Chr3 20565619 C-A Hetero INTERGENIC
SBS Chr3 22895618 C-A Hetero INTERGENIC
SBS Chr3 23504493 C-T Hetero INTERGENIC
SBS Chr3 25449978 T-G Hetero INTERGENIC
SBS Chr3 26704174 C-T Homo INTERGENIC
SBS Chr3 33217330 G-C Hetero INTERGENIC
SBS Chr4 19133624 G-A Hetero INTERGENIC
SBS Chr4 23236904 T-A Hetero INTRON
SBS Chr4 28076190 A-T Hetero INTERGENIC
SBS Chr6 779816 C-T Hetero INTRON
SBS Chr6 18578764 C-T Hetero INTERGENIC
SBS Chr6 19781504 A-T Hetero INTERGENIC
SBS Chr6 21500103 T-C Hetero INTERGENIC
SBS Chr7 12376794 C-T Homo INTERGENIC
SBS Chr8 9996923 C-T Hetero INTERGENIC
SBS Chr8 17928147 A-C Hetero INTERGENIC
SBS Chr8 18310856 T-C Hetero INTERGENIC
SBS Chr9 5316172 C-T Hetero INTERGENIC
SBS Chr9 6815598 T-A Homo INTERGENIC
SBS Chr9 21625434 C-G Hetero INTRON
SBS Chr10 14838444 G-A Hetero INTERGENIC
SBS Chr11 8020255 G-T Hetero INTERGENIC
SBS Chr11 8020944 C-T Hetero INTERGENIC
SBS Chr11 15954827 C-A Hetero INTERGENIC
SBS Chr12 5368662 G-T Hetero INTERGENIC
SBS Chr12 6148120 C-G Hetero INTERGENIC
SBS Chr12 14277231 T-G Hetero INTERGENIC
SBS Chr12 24314975 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 607122 607124 2
Deletion Chr12 1136741 1136746 5
Deletion Chr7 1559251 1559262 11
Deletion Chr7 2528970 2528973 3
Deletion Chr3 2791062 2791077 15
Deletion Chr7 3071824 3071841 17
Deletion Chr9 3395616 3395624 8
Deletion Chr4 4359502 4359508 6
Deletion Chr7 5395028 5395040 12 OsKitaake07g065800
Deletion Chr9 5814089 5814096 7
Deletion Chr8 7850561 7850564 3
Deletion Chr3 10122178 10122204 26
Deletion Chr9 12302800 12302803 3
Deletion Chr6 12538381 12538384 3
Deletion Chr6 20038001 20110000 71999 3
Deletion Chr3 20423068 20423079 11
Deletion Chr7 24264055 24264056 1
Deletion Chr3 25435170 25435172 2
Deletion Chr7 27072217 27072231 14
Deletion Chr3 33922212 33922214 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 941603 941611 7
Insertion Chr8 12883947 12883950 2
Insertion Chr11 11588480 11588484 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 20108626 Chr2 24990071
Translocation Chr6 20141899 Chr2 24990117

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	534898	C-T	Hetero	INTERGENIC
SBS	Chr1	1146687	C-A	Hetero	INTERGENIC
SBS	Chr1	8785282	T-G	Hetero	INTERGENIC
SBS	Chr1	9936316	C-T	Hetero	INTERGENIC
SBS	Chr1	28014706	T-A	Homo	INTRON
SBS	Chr1	29427413	A-T	Hetero	INTERGENIC
SBS	Chr2	23084403	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g225900
SBS	Chr3	20565619	C-A	Hetero	INTERGENIC
SBS	Chr3	22895618	C-A	Hetero	INTERGENIC
SBS	Chr3	23504493	C-T	Hetero	INTERGENIC
SBS	Chr3	25449978	T-G	Hetero	INTERGENIC
SBS	Chr3	26704174	C-T	Homo	INTERGENIC
SBS	Chr3	33217330	G-C	Hetero	INTERGENIC
SBS	Chr4	19133624	G-A	Hetero	INTERGENIC
SBS	Chr4	23236904	T-A	Hetero	INTRON
SBS	Chr4	28076190	A-T	Hetero	INTERGENIC
SBS	Chr6	779816	C-T	Hetero	INTRON
SBS	Chr6	18578764	C-T	Hetero	INTERGENIC
SBS	Chr6	19781504	A-T	Hetero	INTERGENIC
SBS	Chr6	21500103	T-C	Hetero	INTERGENIC
SBS	Chr7	12376794	C-T	Homo	INTERGENIC
SBS	Chr8	9996923	C-T	Hetero	INTERGENIC
SBS	Chr8	17928147	A-C	Hetero	INTERGENIC
SBS	Chr8	18310856	T-C	Hetero	INTERGENIC
SBS	Chr9	5316172	C-T	Hetero	INTERGENIC
SBS	Chr9	6815598	T-A	Homo	INTERGENIC
SBS	Chr9	21625434	C-G	Hetero	INTRON
SBS	Chr10	14838444	G-A	Hetero	INTERGENIC
SBS	Chr11	8020255	G-T	Hetero	INTERGENIC
SBS	Chr11	8020944	C-T	Hetero	INTERGENIC
SBS	Chr11	15954827	C-A	Hetero	INTERGENIC
SBS	Chr12	5368662	G-T	Hetero	INTERGENIC
SBS	Chr12	6148120	C-G	Hetero	INTERGENIC
SBS	Chr12	14277231	T-G	Hetero	INTERGENIC
SBS	Chr12	24314975	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	607122	607124	2
Deletion	Chr12	1136741	1136746	5
Deletion	Chr7	1559251	1559262	11
Deletion	Chr7	2528970	2528973	3
Deletion	Chr3	2791062	2791077	15
Deletion	Chr7	3071824	3071841	17
Deletion	Chr9	3395616	3395624	8
Deletion	Chr4	4359502	4359508	6
Deletion	Chr7	5395028	5395040	12	OsKitaake07g065800
Deletion	Chr9	5814089	5814096	7
Deletion	Chr8	7850561	7850564	3
Deletion	Chr3	10122178	10122204	26
Deletion	Chr9	12302800	12302803	3
Deletion	Chr6	12538381	12538384	3
Deletion	Chr6	20038001	20110000	71999	3
Deletion	Chr3	20423068	20423079	11
Deletion	Chr7	24264055	24264056	1
Deletion	Chr3	25435170	25435172	2
Deletion	Chr7	27072217	27072231	14
Deletion	Chr3	33922212	33922214	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	20108626	Chr2	24990071
Translocation	Chr6	20141899	Chr2	24990117

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes