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Mutant Information

Mutant Name	FN3155-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3155-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7901780 G-T Hetero SYNONYMOUS_CODING
SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr1 41193399 T-A Hetero INTERGENIC
SBS Chr2 4846321 C-T Hetero INTERGENIC
SBS Chr2 15181379 T-A Hetero INTERGENIC
SBS Chr2 18812496 C-T Hetero INTERGENIC
SBS Chr2 33666758 T-A Hetero INTRON
SBS Chr3 4735635 G-T Hetero INTRON
SBS Chr3 12492633 C-T Homo INTERGENIC
SBS Chr3 16850196 C-A Hetero INTERGENIC
SBS Chr3 20664727 C-T Hetero UTR_5_PRIME
SBS Chr3 20664732 T-G Hetero UTR_5_PRIME
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 51258 C-T Hetero INTERGENIC
SBS Chr4 12984143 C-T Hetero INTERGENIC
SBS Chr4 14720848 G-A Hetero INTERGENIC
SBS Chr4 29973969 G-T Hetero INTERGENIC
SBS Chr4 33669893 A-T Hetero INTRON
SBS Chr5 5831557 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g062100
SBS Chr5 12811139 C-T Hetero INTERGENIC
SBS Chr5 26024120 G-T Hetero INTERGENIC
SBS Chr5 27964331 A-T Hetero INTRON
SBS Chr6 638972 C-T Hetero INTERGENIC
SBS Chr6 26999668 T-G Hetero INTERGENIC
SBS Chr7 4971521 G-C Hetero INTERGENIC
SBS Chr7 10167445 C-T Hetero INTERGENIC
SBS Chr7 10404372 G-A Hetero INTERGENIC
SBS Chr7 14222007 T-C Hetero INTRON
SBS Chr7 14961740 C-A Hetero INTERGENIC
SBS Chr7 22162582 G-A Homo INTERGENIC
SBS Chr7 22567596 C-A Homo INTERGENIC
SBS Chr9 11624640 C-T Homo INTERGENIC
SBS Chr9 18553319 T-C Hetero INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr11 12857605 G-A Homo INTERGENIC
SBS Chr12 21513884 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1431209 1431223 14 OsKitaake06g016300
Deletion Chr5 1775632 1775648 16
Deletion Chr12 3535348 3535349 1
Deletion Chr11 4685435 4685444 9
Deletion Chr8 8907217 8907222 5
Deletion Chr8 9233890 9233899 9 OsKitaake08g084200
Deletion Chr11 9796490 9796492 2
Deletion Chr5 10024001 10038000 13999
Deletion Chr4 20166794 20166796 2
Deletion Chr8 20448829 20448842 13
Deletion Chr12 23970443 23970452 9
Deletion Chr12 25771563 25771565 2
Deletion Chr1 26340822 26340847 25
Deletion Chr1 26498095 26498102 7

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr2 20903397 20903400 2
Insertion Chr4 1643431 1643434 2
Insertion Chr4 27341583 27341588 4
Insertion Chr5 919580 919583 2
Insertion Chr5 13270833 13270836 2
Insertion Chr9 17910836 17910839 2 OsKitaake09g136550
Insertion Chr10 2182883 2182886 2
Insertion Chr5 29287059 29287062 2
Insertion Chr12 4918134 4918141 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11194150 11267735 OsKitaake10g066700
Inversion Chr10 11194153 11267752 OsKitaake10g066700
Inversion Chr5 25723402 25725820
Inversion Chr5 25723407 25725817

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 23191812 Chr2 30284120 OsKitaake06g204300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7901780	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	41193399	T-A	Hetero	INTERGENIC
SBS	Chr2	4846321	C-T	Hetero	INTERGENIC
SBS	Chr2	15181379	T-A	Hetero	INTERGENIC
SBS	Chr2	18812496	C-T	Hetero	INTERGENIC
SBS	Chr2	33666758	T-A	Hetero	INTRON
SBS	Chr3	4735635	G-T	Hetero	INTRON
SBS	Chr3	12492633	C-T	Homo	INTERGENIC
SBS	Chr3	16850196	C-A	Hetero	INTERGENIC
SBS	Chr3	20664727	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	20664732	T-G	Hetero	UTR_5_PRIME
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	51258	C-T	Hetero	INTERGENIC
SBS	Chr4	12984143	C-T	Hetero	INTERGENIC
SBS	Chr4	14720848	G-A	Hetero	INTERGENIC
SBS	Chr4	29973969	G-T	Hetero	INTERGENIC
SBS	Chr4	33669893	A-T	Hetero	INTRON
SBS	Chr5	5831557	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g062100
SBS	Chr5	12811139	C-T	Hetero	INTERGENIC
SBS	Chr5	26024120	G-T	Hetero	INTERGENIC
SBS	Chr5	27964331	A-T	Hetero	INTRON
SBS	Chr6	638972	C-T	Hetero	INTERGENIC
SBS	Chr6	26999668	T-G	Hetero	INTERGENIC
SBS	Chr7	4971521	G-C	Hetero	INTERGENIC
SBS	Chr7	10167445	C-T	Hetero	INTERGENIC
SBS	Chr7	10404372	G-A	Hetero	INTERGENIC
SBS	Chr7	14222007	T-C	Hetero	INTRON
SBS	Chr7	14961740	C-A	Hetero	INTERGENIC
SBS	Chr7	22162582	G-A	Homo	INTERGENIC
SBS	Chr7	22567596	C-A	Homo	INTERGENIC
SBS	Chr9	11624640	C-T	Homo	INTERGENIC
SBS	Chr9	18553319	T-C	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr11	12857605	G-A	Homo	INTERGENIC
SBS	Chr12	21513884	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1431209	1431223	14	OsKitaake06g016300
Deletion	Chr5	1775632	1775648	16
Deletion	Chr12	3535348	3535349	1
Deletion	Chr11	4685435	4685444	9
Deletion	Chr8	8907217	8907222	5
Deletion	Chr8	9233890	9233899	9	OsKitaake08g084200
Deletion	Chr11	9796490	9796492	2
Deletion	Chr5	10024001	10038000	13999
Deletion	Chr4	20166794	20166796	2
Deletion	Chr8	20448829	20448842	13
Deletion	Chr12	23970443	23970452	9
Deletion	Chr12	25771563	25771565	2
Deletion	Chr1	26340822	26340847	25
Deletion	Chr1	26498095	26498102	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11194150	11267735	OsKitaake10g066700
Inversion	Chr10	11194153	11267752	OsKitaake10g066700
Inversion	Chr5	25723402	25725820
Inversion	Chr5	25723407	25725817

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes