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Mutant Information

Mutant Name	FN3160-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3160-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5874135 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g074900
SBS Chr1 6541619 G-A Hetero INTERGENIC
SBS Chr1 7072529 C-T Homo INTERGENIC
SBS Chr1 13711481 A-C Hetero INTRON
SBS Chr1 19991783 G-A Homo INTERGENIC
SBS Chr1 29998816 C-T Homo INTERGENIC
SBS Chr2 5344088 C-T Homo UTR_3_PRIME
SBS Chr2 13055617 C-T Homo INTERGENIC
SBS Chr2 26323192 T-C Hetero UTR_3_PRIME
SBS Chr2 26401670 C-G Hetero INTRON
SBS Chr2 34771864 T-A Hetero INTERGENIC
SBS Chr3 999104 G-A Hetero INTERGENIC
SBS Chr3 3129011 T-A Hetero INTERGENIC
SBS Chr3 8037579 G-A Hetero INTERGENIC
SBS Chr3 9069402 T-C Hetero INTERGENIC
SBS Chr3 12766958 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g172100
SBS Chr3 21532389 G-A Hetero INTERGENIC
SBS Chr3 22180523 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g241635
SBS Chr3 22195377 C-T Hetero INTERGENIC
SBS Chr3 24889881 A-G Hetero UTR_3_PRIME
SBS Chr3 27569502 T-G Homo INTERGENIC
SBS Chr4 19999946 C-T Hetero INTRON
SBS Chr4 24818310 C-T Hetero INTERGENIC
SBS Chr4 27193867 C-T Hetero INTERGENIC
SBS Chr5 7240247 G-T Homo INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr5 16675693 T-C Homo INTERGENIC
SBS Chr6 18806565 C-T Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr6 23318744 T-C Hetero INTERGENIC
SBS Chr7 4096806 G-C Hetero INTERGENIC
SBS Chr7 4096813 G-A Hetero INTERGENIC
SBS Chr7 11236723 G-A Homo INTERGENIC
SBS Chr8 1026708 T-A Homo INTERGENIC
SBS Chr8 26906538 G-A Homo INTRON
SBS Chr9 2659415 C-T Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 8814929 C-A Hetero INTERGENIC
SBS Chr10 253094 C-A Hetero INTERGENIC
SBS Chr11 20559390 T-A Hetero INTRON
SBS Chr11 22684275 T-C Hetero INTERGENIC
SBS Chr12 11388781 A-T Hetero INTERGENIC
SBS Chr12 11593016 G-T Homo INTERGENIC
SBS Chr12 18855616 G-A Homo INTERGENIC
SBS Chr12 20620490 C-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 356314 356315 1
Deletion Chr11 1278872 1278878 6
Deletion Chr3 4499896 4499898 2
Deletion Chr11 4789001 4852000 62999 4
Deletion Chr11 4854001 5488000 633999 57
Deletion Chr2 6855633 6855640 7
Deletion Chr11 7496240 7496242 2
Deletion Chr1 7947397 7947399 2
Deletion Chr2 8116213 8116214 1 OsKitaake02g104100
Deletion Chr11 9296001 9314000 17999 OsKitaake11g097500
Deletion Chr3 10854448 10854454 6
Deletion Chr12 12839545 12839547 2
Deletion Chr9 16508127 16508129 2
Deletion Chr10 17472525 17472534 9
Deletion Chr12 17982235 17982238 3
Deletion Chr1 19330117 19330119 2
Deletion Chr6 24012680 24012682 2
Deletion Chr8 24428819 24428832 13
Deletion Chr4 24446408 24446409 1
Deletion Chr1 27305047 27305049 2
Deletion Chr3 28058001 28091000 32999 4
Deletion Chr5 28105001 28311000 205999 33

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11735511 11735514 2
Insertion Chr1 44213717 44213720 2
Insertion Chr3 4468617 4468623 5
Insertion Chr3 29644383 29644386 2
Insertion Chr5 563264 563267 2
Insertion Chr8 11346425 11346428 2
Insertion Chr10 5480838 5480843 4
Insertion Chr11 3863677 3863680 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 17445154 17895899
Inversion Chr7 17448080 17709837
Inversion Chr7 17448114 18089192 OsKitaake07g145500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 5291342 Chr6 5240578
Translocation Chr10 5291346 Chr7 17896341

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5874135	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g074900
SBS	Chr1	6541619	G-A	Hetero	INTERGENIC
SBS	Chr1	7072529	C-T	Homo	INTERGENIC
SBS	Chr1	13711481	A-C	Hetero	INTRON
SBS	Chr1	19991783	G-A	Homo	INTERGENIC
SBS	Chr1	29998816	C-T	Homo	INTERGENIC
SBS	Chr2	5344088	C-T	Homo	UTR_3_PRIME
SBS	Chr2	13055617	C-T	Homo	INTERGENIC
SBS	Chr2	26323192	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	26401670	C-G	Hetero	INTRON
SBS	Chr2	34771864	T-A	Hetero	INTERGENIC
SBS	Chr3	999104	G-A	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Hetero	INTERGENIC
SBS	Chr3	8037579	G-A	Hetero	INTERGENIC
SBS	Chr3	9069402	T-C	Hetero	INTERGENIC
SBS	Chr3	12766958	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g172100
SBS	Chr3	21532389	G-A	Hetero	INTERGENIC
SBS	Chr3	22180523	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241635
SBS	Chr3	22195377	C-T	Hetero	INTERGENIC
SBS	Chr3	24889881	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	27569502	T-G	Homo	INTERGENIC
SBS	Chr4	19999946	C-T	Hetero	INTRON
SBS	Chr4	24818310	C-T	Hetero	INTERGENIC
SBS	Chr4	27193867	C-T	Hetero	INTERGENIC
SBS	Chr5	7240247	G-T	Homo	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr5	16675693	T-C	Homo	INTERGENIC
SBS	Chr6	18806565	C-T	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr6	23318744	T-C	Hetero	INTERGENIC
SBS	Chr7	4096806	G-C	Hetero	INTERGENIC
SBS	Chr7	4096813	G-A	Hetero	INTERGENIC
SBS	Chr7	11236723	G-A	Homo	INTERGENIC
SBS	Chr8	1026708	T-A	Homo	INTERGENIC
SBS	Chr8	26906538	G-A	Homo	INTRON
SBS	Chr9	2659415	C-T	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	8814929	C-A	Hetero	INTERGENIC
SBS	Chr10	253094	C-A	Hetero	INTERGENIC
SBS	Chr11	20559390	T-A	Hetero	INTRON
SBS	Chr11	22684275	T-C	Hetero	INTERGENIC
SBS	Chr12	11388781	A-T	Hetero	INTERGENIC
SBS	Chr12	11593016	G-T	Homo	INTERGENIC
SBS	Chr12	18855616	G-A	Homo	INTERGENIC
SBS	Chr12	20620490	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	356314	356315	1
Deletion	Chr11	1278872	1278878	6
Deletion	Chr3	4499896	4499898	2
Deletion	Chr11	4789001	4852000	62999	4
Deletion	Chr11	4854001	5488000	633999	57
Deletion	Chr2	6855633	6855640	7
Deletion	Chr11	7496240	7496242	2
Deletion	Chr1	7947397	7947399	2
Deletion	Chr2	8116213	8116214	1	OsKitaake02g104100
Deletion	Chr11	9296001	9314000	17999	OsKitaake11g097500
Deletion	Chr3	10854448	10854454	6
Deletion	Chr12	12839545	12839547	2
Deletion	Chr9	16508127	16508129	2
Deletion	Chr10	17472525	17472534	9
Deletion	Chr12	17982235	17982238	3
Deletion	Chr1	19330117	19330119	2
Deletion	Chr6	24012680	24012682	2
Deletion	Chr8	24428819	24428832	13
Deletion	Chr4	24446408	24446409	1
Deletion	Chr1	27305047	27305049	2
Deletion	Chr3	28058001	28091000	32999	4
Deletion	Chr5	28105001	28311000	205999	33

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17445154	17895899
Inversion	Chr7	17448080	17709837
Inversion	Chr7	17448114	18089192	OsKitaake07g145500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes