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Mutant Information

Mutant Name	FN3164-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3164-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3137843 A-G Homo INTRON
SBS Chr1 13990434 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g161000
SBS Chr1 18702228 G-A Hetero INTERGENIC
SBS Chr1 31865983 G-A Hetero INTERGENIC
SBS Chr1 42805584 A-T Homo INTRON
SBS Chr1 42805585 C-A Homo INTRON
SBS Chr1 42885889 G-A Homo INTERGENIC
SBS Chr2 6640180 G-A Hetero INTERGENIC
SBS Chr2 16834866 C-G Hetero INTERGENIC
SBS Chr2 30274303 T-A Hetero INTERGENIC
SBS Chr2 31817606 C-A Hetero INTRON
SBS Chr2 34411968 G-T Hetero INTERGENIC
SBS Chr3 10523774 T-C Hetero INTERGENIC
SBS Chr3 27062035 G-A Homo INTRON
SBS Chr3 31681129 T-A Hetero INTERGENIC
SBS Chr3 31681131 T-A Hetero INTERGENIC
SBS Chr3 33404185 C-T Hetero INTERGENIC
SBS Chr4 12481913 T-C Hetero INTERGENIC
SBS Chr4 21400791 T-C Hetero INTERGENIC
SBS Chr4 32235572 T-A Hetero INTERGENIC
SBS Chr4 35447932 C-T Hetero INTERGENIC
SBS Chr5 3736293 C-T Homo INTERGENIC
SBS Chr5 4416866 C-T Hetero INTERGENIC
SBS Chr5 10506234 G-C Hetero INTERGENIC
SBS Chr5 18096259 G-A Hetero INTRON
SBS Chr5 19502736 G-A Hetero INTERGENIC
SBS Chr5 20840002 A-G Homo INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 3146162 T-C Hetero INTERGENIC
SBS Chr6 4872108 G-T Homo INTERGENIC
SBS Chr6 21636242 A-T Hetero INTERGENIC
SBS Chr6 25721527 C-A Hetero INTERGENIC
SBS Chr7 2600164 C-A Hetero INTERGENIC
SBS Chr7 13678622 G-A Hetero INTERGENIC
SBS Chr8 5730624 A-T Homo INTERGENIC
SBS Chr9 15348724 T-G Hetero INTERGENIC
SBS Chr9 15348725 G-T Hetero INTERGENIC
SBS Chr10 1358770 A-C Homo INTERGENIC
SBS Chr10 19855065 C-A Hetero INTERGENIC
SBS Chr11 5039440 G-A Hetero INTERGENIC
SBS Chr11 10010389 G-T Hetero INTRON
SBS Chr11 13475706 T-G Hetero INTERGENIC
SBS Chr11 17615178 A-T Homo INTERGENIC
SBS Chr11 17615179 C-T Homo INTERGENIC
SBS Chr11 23789049 T-G Homo INTERGENIC
SBS Chr12 9073233 A-G Hetero INTERGENIC
SBS Chr12 17927308 C-T Hetero INTERGENIC
SBS Chr12 19621007 C-T Hetero INTERGENIC
SBS Chr12 20051228 G-A Homo UTR_3_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3530821 3530829 8
Deletion Chr8 6128240 6128241 1
Deletion Chr4 7875697 7875709 12
Deletion Chr1 10429001 10464000 34999 5
Deletion Chr3 10747220 10747222 2
Deletion Chr1 14348001 14738000 389999 33
Deletion Chr7 15367711 15367712 1
Deletion Chr10 16218492 16218501 9
Deletion Chr5 17282001 17306000 23999 2
Deletion Chr12 20616544 20616546 2
Deletion Chr2 23591704 23591705 1
Deletion Chr11 24352247 24352249 2
Deletion Chr1 25913406 25913412 6
Deletion Chr11 28116753 28116763 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25135582 25135587 4
Insertion Chr4 30058269 30058272 2
Insertion Chr4 8898522 8898524 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 16885722 17276980 OsKitaake05g129000
Inversion Chr5 17164947 17330702
Inversion Chr5 17166716 17309620

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3137843	A-G	Homo	INTRON
SBS	Chr1	13990434	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g161000
SBS	Chr1	18702228	G-A	Hetero	INTERGENIC
SBS	Chr1	31865983	G-A	Hetero	INTERGENIC
SBS	Chr1	42805584	A-T	Homo	INTRON
SBS	Chr1	42805585	C-A	Homo	INTRON
SBS	Chr1	42885889	G-A	Homo	INTERGENIC
SBS	Chr2	6640180	G-A	Hetero	INTERGENIC
SBS	Chr2	16834866	C-G	Hetero	INTERGENIC
SBS	Chr2	30274303	T-A	Hetero	INTERGENIC
SBS	Chr2	31817606	C-A	Hetero	INTRON
SBS	Chr2	34411968	G-T	Hetero	INTERGENIC
SBS	Chr3	10523774	T-C	Hetero	INTERGENIC
SBS	Chr3	27062035	G-A	Homo	INTRON
SBS	Chr3	31681129	T-A	Hetero	INTERGENIC
SBS	Chr3	31681131	T-A	Hetero	INTERGENIC
SBS	Chr3	33404185	C-T	Hetero	INTERGENIC
SBS	Chr4	12481913	T-C	Hetero	INTERGENIC
SBS	Chr4	21400791	T-C	Hetero	INTERGENIC
SBS	Chr4	32235572	T-A	Hetero	INTERGENIC
SBS	Chr4	35447932	C-T	Hetero	INTERGENIC
SBS	Chr5	3736293	C-T	Homo	INTERGENIC
SBS	Chr5	4416866	C-T	Hetero	INTERGENIC
SBS	Chr5	10506234	G-C	Hetero	INTERGENIC
SBS	Chr5	18096259	G-A	Hetero	INTRON
SBS	Chr5	19502736	G-A	Hetero	INTERGENIC
SBS	Chr5	20840002	A-G	Homo	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	3146162	T-C	Hetero	INTERGENIC
SBS	Chr6	4872108	G-T	Homo	INTERGENIC
SBS	Chr6	21636242	A-T	Hetero	INTERGENIC
SBS	Chr6	25721527	C-A	Hetero	INTERGENIC
SBS	Chr7	2600164	C-A	Hetero	INTERGENIC
SBS	Chr7	13678622	G-A	Hetero	INTERGENIC
SBS	Chr8	5730624	A-T	Homo	INTERGENIC
SBS	Chr9	15348724	T-G	Hetero	INTERGENIC
SBS	Chr9	15348725	G-T	Hetero	INTERGENIC
SBS	Chr10	1358770	A-C	Homo	INTERGENIC
SBS	Chr10	19855065	C-A	Hetero	INTERGENIC
SBS	Chr11	5039440	G-A	Hetero	INTERGENIC
SBS	Chr11	10010389	G-T	Hetero	INTRON
SBS	Chr11	13475706	T-G	Hetero	INTERGENIC
SBS	Chr11	17615178	A-T	Homo	INTERGENIC
SBS	Chr11	17615179	C-T	Homo	INTERGENIC
SBS	Chr11	23789049	T-G	Homo	INTERGENIC
SBS	Chr12	9073233	A-G	Hetero	INTERGENIC
SBS	Chr12	17927308	C-T	Hetero	INTERGENIC
SBS	Chr12	19621007	C-T	Hetero	INTERGENIC
SBS	Chr12	20051228	G-A	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3530821	3530829	8
Deletion	Chr8	6128240	6128241	1
Deletion	Chr4	7875697	7875709	12
Deletion	Chr1	10429001	10464000	34999	5
Deletion	Chr3	10747220	10747222	2
Deletion	Chr1	14348001	14738000	389999	33
Deletion	Chr7	15367711	15367712	1
Deletion	Chr10	16218492	16218501	9
Deletion	Chr5	17282001	17306000	23999	2
Deletion	Chr12	20616544	20616546	2
Deletion	Chr2	23591704	23591705	1
Deletion	Chr11	24352247	24352249	2
Deletion	Chr1	25913406	25913412	6
Deletion	Chr11	28116753	28116763	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16885722	17276980	OsKitaake05g129000
Inversion	Chr5	17164947	17330702
Inversion	Chr5	17166716	17309620

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes