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Mutant Information

Mutant Name	FN3165-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3165-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6050213 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g077200
SBS Chr1 14904188 C-A Homo INTERGENIC
SBS Chr1 17181913 C-T Homo INTERGENIC
SBS Chr1 17181914 C-T Homo INTERGENIC
SBS Chr1 33345787 A-T Hetero INTERGENIC
SBS Chr2 14501620 C-A Homo INTERGENIC
SBS Chr2 17086016 G-T Homo INTERGENIC
SBS Chr2 20382917 C-T Hetero INTERGENIC
SBS Chr2 28879580 C-T Hetero INTERGENIC
SBS Chr2 29619652 A-C Hetero INTERGENIC
SBS Chr3 14352506 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 29295242 G-A Hetero INTERGENIC
SBS Chr3 30755664 G-A Hetero INTERGENIC
SBS Chr4 1606536 G-A Homo INTERGENIC
SBS Chr4 2083189 C-G Hetero INTERGENIC
SBS Chr4 9667747 T-A Hetero INTERGENIC
SBS Chr4 35278551 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g298000
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr5 8206388 G-C Hetero INTERGENIC
SBS Chr5 16923520 T-A Hetero INTERGENIC
SBS Chr6 7509626 G-C Homo INTERGENIC
SBS Chr6 7946824 G-A Hetero INTERGENIC
SBS Chr6 12455524 A-G Homo INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 19204986 A-C Homo INTERGENIC
SBS Chr7 1472848 A-T Homo INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 26660083 G-C Hetero INTRON
SBS Chr7 27692785 G-A Hetero INTERGENIC
SBS Chr9 6522710 C-T Hetero INTERGENIC
SBS Chr9 6575372 T-A Hetero INTERGENIC
SBS Chr9 9586992 C-G Hetero INTERGENIC
SBS Chr9 10791131 C-T Hetero UTR_5_PRIME
SBS Chr10 16818692 C-T Hetero INTERGENIC
SBS Chr10 17559481 C-T Hetero INTRON
SBS Chr10 17559485 G-T Hetero INTRON
SBS Chr10 21315088 C-T Hetero INTERGENIC
SBS Chr10 21315089 T-A Hetero INTERGENIC
SBS Chr11 10483637 G-A Hetero INTERGENIC
SBS Chr11 12898853 A-T Hetero INTERGENIC
SBS Chr12 4403928 G-A Homo INTERGENIC
SBS Chr12 6994122 A-T Homo INTERGENIC
SBS Chr12 11603834 C-T Homo INTERGENIC
SBS Chr12 17771513 C-T Homo INTRON
SBS Chr12 21779538 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 929383 929392 9
Deletion Chr1 4837001 4972000 134999 18
Deletion Chr7 8078063 8078064 1
Deletion Chr10 9932894 9932917 23
Deletion Chr6 17214170 17214177 7
Deletion Chr7 22738001 22879000 140999 17
Deletion Chr12 23333392 23333397 5
Deletion Chr6 24580886 24580893 7
Deletion Chr7 24704130 24704131 1
Deletion Chr6 25262054 25262063 9
Deletion Chr8 27678438 27678450 12
Deletion Chr6 28302001 28322000 19999 OsKitaake06g258700
Deletion Chr8 29178223 29178224 1
Deletion Chr4 30107041 30107046 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1456913 1456916 2
Insertion Chr6 1100237 1100240 2
Insertion Chr12 8900280 8900283 2
Insertion Chr12 25558146 25558149 2
Insertion Chr1 21134784 21134786 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 5004568 Chr1 27642220
Translocation Chr9 5004572 Chr1 27650431
Translocation Chr8 10644819 Chr1 11783527
Translocation Chr8 10689226 Chr1 11783526

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6050213	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g077200
SBS	Chr1	14904188	C-A	Homo	INTERGENIC
SBS	Chr1	17181913	C-T	Homo	INTERGENIC
SBS	Chr1	17181914	C-T	Homo	INTERGENIC
SBS	Chr1	33345787	A-T	Hetero	INTERGENIC
SBS	Chr2	14501620	C-A	Homo	INTERGENIC
SBS	Chr2	17086016	G-T	Homo	INTERGENIC
SBS	Chr2	20382917	C-T	Hetero	INTERGENIC
SBS	Chr2	28879580	C-T	Hetero	INTERGENIC
SBS	Chr2	29619652	A-C	Hetero	INTERGENIC
SBS	Chr3	14352506	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	29295242	G-A	Hetero	INTERGENIC
SBS	Chr3	30755664	G-A	Hetero	INTERGENIC
SBS	Chr4	1606536	G-A	Homo	INTERGENIC
SBS	Chr4	2083189	C-G	Hetero	INTERGENIC
SBS	Chr4	9667747	T-A	Hetero	INTERGENIC
SBS	Chr4	35278551	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g298000
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr5	8206388	G-C	Hetero	INTERGENIC
SBS	Chr5	16923520	T-A	Hetero	INTERGENIC
SBS	Chr6	7509626	G-C	Homo	INTERGENIC
SBS	Chr6	7946824	G-A	Hetero	INTERGENIC
SBS	Chr6	12455524	A-G	Homo	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	19204986	A-C	Homo	INTERGENIC
SBS	Chr7	1472848	A-T	Homo	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	26660083	G-C	Hetero	INTRON
SBS	Chr7	27692785	G-A	Hetero	INTERGENIC
SBS	Chr9	6522710	C-T	Hetero	INTERGENIC
SBS	Chr9	6575372	T-A	Hetero	INTERGENIC
SBS	Chr9	9586992	C-G	Hetero	INTERGENIC
SBS	Chr9	10791131	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	16818692	C-T	Hetero	INTERGENIC
SBS	Chr10	17559481	C-T	Hetero	INTRON
SBS	Chr10	17559485	G-T	Hetero	INTRON
SBS	Chr10	21315088	C-T	Hetero	INTERGENIC
SBS	Chr10	21315089	T-A	Hetero	INTERGENIC
SBS	Chr11	10483637	G-A	Hetero	INTERGENIC
SBS	Chr11	12898853	A-T	Hetero	INTERGENIC
SBS	Chr12	4403928	G-A	Homo	INTERGENIC
SBS	Chr12	6994122	A-T	Homo	INTERGENIC
SBS	Chr12	11603834	C-T	Homo	INTERGENIC
SBS	Chr12	17771513	C-T	Homo	INTRON
SBS	Chr12	21779538	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	929383	929392	9
Deletion	Chr1	4837001	4972000	134999	18
Deletion	Chr7	8078063	8078064	1
Deletion	Chr10	9932894	9932917	23
Deletion	Chr6	17214170	17214177	7
Deletion	Chr7	22738001	22879000	140999	17
Deletion	Chr12	23333392	23333397	5
Deletion	Chr6	24580886	24580893	7
Deletion	Chr7	24704130	24704131	1
Deletion	Chr6	25262054	25262063	9
Deletion	Chr8	27678438	27678450	12
Deletion	Chr6	28302001	28322000	19999	OsKitaake06g258700
Deletion	Chr8	29178223	29178224	1
Deletion	Chr4	30107041	30107046	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5004568	Chr1	27642220
Translocation	Chr9	5004572	Chr1	27650431
Translocation	Chr8	10644819	Chr1	11783527
Translocation	Chr8	10689226	Chr1	11783526

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes