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Mutant Information

Mutant Name	FN3171-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3171-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8272570 A-T Homo UTR_3_PRIME
SBS Chr1 8980347 A-T Homo INTERGENIC
SBS Chr1 15123982 C-T Homo INTERGENIC
SBS Chr1 15123983 T-C Homo INTERGENIC
SBS Chr1 21728302 C-T Homo INTRON
SBS Chr1 29709146 C-T Hetero INTERGENIC
SBS Chr1 33396065 A-G Hetero INTERGENIC
SBS Chr2 8202606 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g104900
SBS Chr2 16326618 C-T Hetero INTERGENIC
SBS Chr2 24760360 A-G Homo UTR_3_PRIME
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr2 29288212 C-A Hetero INTRON
SBS Chr3 8078251 G-A Homo INTRON
SBS Chr3 8663052 C-G Homo INTERGENIC
SBS Chr4 4523985 G-C Homo INTERGENIC
SBS Chr4 10267239 C-T Homo INTERGENIC
SBS Chr5 460765 T-G Hetero INTERGENIC
SBS Chr5 2098739 C-T Hetero INTERGENIC
SBS Chr6 5200338 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g069900
SBS Chr6 5552926 T-A Hetero INTERGENIC
SBS Chr6 13963415 G-A Hetero INTRON
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 19016588 T-C Hetero INTERGENIC
SBS Chr7 23350847 A-T Hetero INTERGENIC
SBS Chr7 24021019 C-T Homo INTERGENIC
SBS Chr8 9638551 A-C Homo INTERGENIC
SBS Chr8 9638552 C-T Homo INTERGENIC
SBS Chr11 2139703 C-T Hetero INTERGENIC
SBS Chr11 5882847 C-T Homo INTRON
SBS Chr11 10305797 G-A Hetero INTERGENIC
SBS Chr11 11073756 G-A Hetero INTRON
SBS Chr11 17966201 C-T Hetero INTERGENIC
SBS Chr11 23005175 G-A Homo INTERGENIC
SBS Chr11 28900064 C-T Homo INTERGENIC
SBS Chr12 5125854 A-G Hetero INTRON
SBS Chr12 6325442 T-A Homo NON_SYNONYMOUS_CODING OsKitaake12g073100
SBS Chr12 6325443 A-T Homo SYNONYMOUS_CODING
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2405314 2405316 2
Deletion Chr10 4818471 4818484 13
Deletion Chr1 5045780 5045788 8
Deletion Chr6 6531537 6531547 10
Deletion Chr7 9327586 9327587 1
Deletion Chr4 10329801 10329816 15
Deletion Chr4 11612773 11612777 4
Deletion Chr4 12896894 12896905 11
Deletion Chr4 13152615 13152616 1
Deletion Chr2 13205900 13205901 1
Deletion Chr3 13608670 13608673 3
Deletion Chr10 16512001 16545000 32999 4
Deletion Chr12 16616522 16616525 3 OsKitaake12g125000
Deletion Chr6 16887757 16887765 8
Deletion Chr9 20036431 20036434 3
Deletion Chr12 20172538 20172542 4
Deletion Chr3 20715988 20715990 2
Deletion Chr8 21690614 21690622 8
Deletion Chr6 29381276 29381283 7
Deletion Chr3 33467858 33467876 18
Deletion Chr1 39635215 39635217 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4269394 4269398 3
Insertion Chr3 23577975 23577978 2
Insertion Chr7 4165422 4165424 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2733298 3354052 OsKitaake03g038600
Inversion Chr3 2737771 3354163
Inversion Chr8 8804499 9081482 OsKitaake08g080900
Inversion Chr8 8804503 8846403 OsKitaake08g080900
Inversion Chr10 15831269 16029921
Inversion Chr10 16009519 16029917

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15831280 Chr3 2733313 OsKitaake03g038600
Translocation Chr10 16514086 Chr2 26158752 OsKitaake10g112200
Translocation Chr10 16549594 Chr4 23598301 OsKitaake04g148300
Translocation Chr10 16568512 Chr4 23598289 OsKitaake04g148300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8272570	A-T	Homo	UTR_3_PRIME
SBS	Chr1	8980347	A-T	Homo	INTERGENIC
SBS	Chr1	15123982	C-T	Homo	INTERGENIC
SBS	Chr1	15123983	T-C	Homo	INTERGENIC
SBS	Chr1	21728302	C-T	Homo	INTRON
SBS	Chr1	29709146	C-T	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Hetero	INTERGENIC
SBS	Chr2	8202606	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g104900
SBS	Chr2	16326618	C-T	Hetero	INTERGENIC
SBS	Chr2	24760360	A-G	Homo	UTR_3_PRIME
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr2	29288212	C-A	Hetero	INTRON
SBS	Chr3	8078251	G-A	Homo	INTRON
SBS	Chr3	8663052	C-G	Homo	INTERGENIC
SBS	Chr4	4523985	G-C	Homo	INTERGENIC
SBS	Chr4	10267239	C-T	Homo	INTERGENIC
SBS	Chr5	460765	T-G	Hetero	INTERGENIC
SBS	Chr5	2098739	C-T	Hetero	INTERGENIC
SBS	Chr6	5200338	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g069900
SBS	Chr6	5552926	T-A	Hetero	INTERGENIC
SBS	Chr6	13963415	G-A	Hetero	INTRON
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	19016588	T-C	Hetero	INTERGENIC
SBS	Chr7	23350847	A-T	Hetero	INTERGENIC
SBS	Chr7	24021019	C-T	Homo	INTERGENIC
SBS	Chr8	9638551	A-C	Homo	INTERGENIC
SBS	Chr8	9638552	C-T	Homo	INTERGENIC
SBS	Chr11	2139703	C-T	Hetero	INTERGENIC
SBS	Chr11	5882847	C-T	Homo	INTRON
SBS	Chr11	10305797	G-A	Hetero	INTERGENIC
SBS	Chr11	11073756	G-A	Hetero	INTRON
SBS	Chr11	17966201	C-T	Hetero	INTERGENIC
SBS	Chr11	23005175	G-A	Homo	INTERGENIC
SBS	Chr11	28900064	C-T	Homo	INTERGENIC
SBS	Chr12	5125854	A-G	Hetero	INTRON
SBS	Chr12	6325442	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g073100
SBS	Chr12	6325443	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2405314	2405316	2
Deletion	Chr10	4818471	4818484	13
Deletion	Chr1	5045780	5045788	8
Deletion	Chr6	6531537	6531547	10
Deletion	Chr7	9327586	9327587	1
Deletion	Chr4	10329801	10329816	15
Deletion	Chr4	11612773	11612777	4
Deletion	Chr4	12896894	12896905	11
Deletion	Chr4	13152615	13152616	1
Deletion	Chr2	13205900	13205901	1
Deletion	Chr3	13608670	13608673	3
Deletion	Chr10	16512001	16545000	32999	4
Deletion	Chr12	16616522	16616525	3	OsKitaake12g125000
Deletion	Chr6	16887757	16887765	8
Deletion	Chr9	20036431	20036434	3
Deletion	Chr12	20172538	20172542	4
Deletion	Chr3	20715988	20715990	2
Deletion	Chr8	21690614	21690622	8
Deletion	Chr6	29381276	29381283	7
Deletion	Chr3	33467858	33467876	18
Deletion	Chr1	39635215	39635217	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2733298	3354052	OsKitaake03g038600
Inversion	Chr3	2737771	3354163
Inversion	Chr8	8804499	9081482	OsKitaake08g080900
Inversion	Chr8	8804503	8846403	OsKitaake08g080900
Inversion	Chr10	15831269	16029921
Inversion	Chr10	16009519	16029917

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes