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Mutant Information

Mutant Name	FN3172-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3172-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35512668 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g375500
SBS Chr1 36805452 G-C Homo NON_SYNONYMOUS_CODING OsKitaake01g391400
SBS Chr2 728663 C-T Hetero INTERGENIC
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 37433195 G-C Hetero INTERGENIC
SBS Chr4 14368619 T-A Hetero INTERGENIC
SBS Chr4 17248284 G-A Homo INTERGENIC
SBS Chr4 17248285 C-A Homo INTERGENIC
SBS Chr4 21403506 C-A Homo INTERGENIC
SBS Chr4 25662963 T-A Homo INTERGENIC
SBS Chr4 28615847 G-T Homo INTERGENIC
SBS Chr5 1048100 C-A Homo INTERGENIC
SBS Chr5 11342176 C-A Hetero INTERGENIC
SBS Chr5 12807227 C-T Homo INTERGENIC
SBS Chr5 15369869 C-T Homo INTERGENIC
SBS Chr5 28173234 T-A Hetero UTR_3_PRIME
SBS Chr6 11561553 G-A Hetero INTERGENIC
SBS Chr6 27825460 A-G Homo INTERGENIC
SBS Chr7 527687 G-A Hetero INTERGENIC
SBS Chr7 1315196 T-C Hetero START_GAINED
SBS Chr7 7080515 C-T Hetero INTERGENIC
SBS Chr7 7174965 C-T Hetero INTERGENIC
SBS Chr7 13745666 C-G Hetero INTERGENIC
SBS Chr7 18950784 T-C Hetero INTERGENIC
SBS Chr8 8200368 C-T Hetero INTERGENIC
SBS Chr8 8396130 A-T Hetero INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr9 88550 G-T Hetero INTERGENIC
SBS Chr9 88551 C-T Hetero INTERGENIC
SBS Chr9 635884 T-A Hetero INTERGENIC
SBS Chr9 1094217 G-A Hetero INTERGENIC
SBS Chr9 7879463 C-A Homo INTRON
SBS Chr10 10695423 G-A Hetero INTERGENIC
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr11 17980672 G-A Hetero INTERGENIC
SBS Chr11 19694595 G-A Homo INTERGENIC
SBS Chr11 24566747 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1044950 1044952 2
Deletion Chr12 5250623 5250637 14
Deletion Chr3 6051371 6051376 5
Deletion Chr2 6929536 6929540 4
Deletion Chr9 9295946 9295954 8
Deletion Chr11 14953515 14953517 2
Deletion Chr1 17539781 17539794 13
Deletion Chr5 19200670 19200671 1
Deletion Chr12 19892836 19892837 1
Deletion Chr9 21719459 21719461 2
Deletion Chr4 28628999 28629006 7
Deletion Chr1 30931407 30931408 1
Deletion Chr4 35342885 35342891 6

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr3 10800639 10800642 2
Insertion Chr5 13410702 13410705 2
Insertion Chr6 5483886 5483889 2
Insertion Chr7 23728508 23728517 8
Insertion Chr7 27533966 27533969 2
Insertion Chr11 20370333 20370336 2
Insertion Chr4 4771841 4771843 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 6727257 6903217 OsKitaake06g089500
Inversion Chr6 6727262 6903220 OsKitaake06g089500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3441425 Chr6 22419750 OsKitaake10g026000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35512668	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g375500
SBS	Chr1	36805452	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g391400
SBS	Chr2	728663	C-T	Hetero	INTERGENIC
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	37433195	G-C	Hetero	INTERGENIC
SBS	Chr4	14368619	T-A	Hetero	INTERGENIC
SBS	Chr4	17248284	G-A	Homo	INTERGENIC
SBS	Chr4	17248285	C-A	Homo	INTERGENIC
SBS	Chr4	21403506	C-A	Homo	INTERGENIC
SBS	Chr4	25662963	T-A	Homo	INTERGENIC
SBS	Chr4	28615847	G-T	Homo	INTERGENIC
SBS	Chr5	1048100	C-A	Homo	INTERGENIC
SBS	Chr5	11342176	C-A	Hetero	INTERGENIC
SBS	Chr5	12807227	C-T	Homo	INTERGENIC
SBS	Chr5	15369869	C-T	Homo	INTERGENIC
SBS	Chr5	28173234	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	11561553	G-A	Hetero	INTERGENIC
SBS	Chr6	27825460	A-G	Homo	INTERGENIC
SBS	Chr7	527687	G-A	Hetero	INTERGENIC
SBS	Chr7	1315196	T-C	Hetero	START_GAINED
SBS	Chr7	7080515	C-T	Hetero	INTERGENIC
SBS	Chr7	7174965	C-T	Hetero	INTERGENIC
SBS	Chr7	13745666	C-G	Hetero	INTERGENIC
SBS	Chr7	18950784	T-C	Hetero	INTERGENIC
SBS	Chr8	8200368	C-T	Hetero	INTERGENIC
SBS	Chr8	8396130	A-T	Hetero	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr9	88550	G-T	Hetero	INTERGENIC
SBS	Chr9	88551	C-T	Hetero	INTERGENIC
SBS	Chr9	635884	T-A	Hetero	INTERGENIC
SBS	Chr9	1094217	G-A	Hetero	INTERGENIC
SBS	Chr9	7879463	C-A	Homo	INTRON
SBS	Chr10	10695423	G-A	Hetero	INTERGENIC
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr11	17980672	G-A	Hetero	INTERGENIC
SBS	Chr11	19694595	G-A	Homo	INTERGENIC
SBS	Chr11	24566747	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1044950	1044952	2
Deletion	Chr12	5250623	5250637	14
Deletion	Chr3	6051371	6051376	5
Deletion	Chr2	6929536	6929540	4
Deletion	Chr9	9295946	9295954	8
Deletion	Chr11	14953515	14953517	2
Deletion	Chr1	17539781	17539794	13
Deletion	Chr5	19200670	19200671	1
Deletion	Chr12	19892836	19892837	1
Deletion	Chr9	21719459	21719461	2
Deletion	Chr4	28628999	28629006	7
Deletion	Chr1	30931407	30931408	1
Deletion	Chr4	35342885	35342891	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6727257	6903217	OsKitaake06g089500
Inversion	Chr6	6727262	6903220	OsKitaake06g089500

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Variant Type

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Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

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End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

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Position 1

Chromosome

Position 2

Number of Genes