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| Mutant Information |
|---|
| Mutant Name | FN3173-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3173-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1696044 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7737394 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 10069147 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 14520224 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 24733278 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25422826 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35926734 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 2180333 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 6748261 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25130790 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19700112 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36882425 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 25693857 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34433949 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36607539 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 36607546 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 36607547 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17894123 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23880231 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16532867 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4425143 | A-C | Hetero | INTRON | |
| SBS | Chr7 | 22260430 | A-T | Homo | INTRON | |
| SBS | Chr7 | 26457159 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 18401178 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22946762 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27922448 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g228800 |
| SBS | Chr12 | 6441670 | T-A | Hetero | STOP_GAINED | OsKitaake12g074200 |
| SBS | Chr12 | 10996640 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 26506519 | T-A | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 2916209 | 2916210 | 1 | OsKitaake05g033900 |
| Deletion | Chr10 | 11722001 | 11784000 | 61999 | 4 |
| Deletion | Chr8 | 14903058 | 14903068 | 10 | |
| Deletion | Chr2 | 16976638 | 16976643 | 5 | |
| Deletion | Chr10 | 19774670 | 19774672 | 2 | |
| Deletion | Chr10 | 20328001 | 20355000 | 26999 | 3 |
| Deletion | Chr5 | 21920780 | 21920791 | 11 | |
| Deletion | Chr5 | 28647513 | 28647518 | 5 | |
| Deletion | Chr3 | 28668189 | 28668190 | 1 | |
| Deletion | Chr2 | 29498995 | 29499011 | 16 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 27890623 | 27890629 | 5 | |
| Insertion | Chr11 | 8851780 | 8851783 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 35560364 | 36086168 | OsKitaake01g376300 |