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Mutant Information

Mutant Name	FN3174-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3174-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11673637 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 18983701 G-A Hetero INTRON
SBS Chr1 19471606 C-T Hetero INTERGENIC
SBS Chr1 21772839 G-A Homo INTERGENIC
SBS Chr1 25500929 G-A Hetero INTERGENIC
SBS Chr2 6289551 T-A Hetero INTERGENIC
SBS Chr2 14682078 T-C Hetero UTR_3_PRIME
SBS Chr2 29318111 G-A Hetero INTERGENIC
SBS Chr3 13268136 G-A Hetero INTERGENIC
SBS Chr3 33074560 C-T Homo INTERGENIC
SBS Chr4 18372464 G-A Hetero INTERGENIC
SBS Chr5 7543687 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g075600
SBS Chr5 17644039 T-A Homo INTRON
SBS Chr5 17644040 G-T Homo INTRON
SBS Chr5 24827713 T-C Hetero INTRON
SBS Chr6 3072166 A-T Hetero INTERGENIC
SBS Chr6 8134936 T-A Hetero INTERGENIC
SBS Chr6 19203451 C-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 15855574 C-A Hetero INTERGENIC
SBS Chr8 19683502 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g144700
SBS Chr8 22253967 C-A Hetero INTERGENIC
SBS Chr9 3139891 G-A Hetero INTERGENIC
SBS Chr9 17734409 A-T Hetero INTERGENIC
SBS Chr10 750893 G-A Hetero INTERGENIC
SBS Chr10 2789386 A-T Hetero INTERGENIC
SBS Chr10 2970635 G-A Hetero INTERGENIC
SBS Chr10 8807465 C-A Hetero INTERGENIC
SBS Chr10 9217063 T-C Hetero INTERGENIC
SBS Chr10 14117889 C-T Hetero INTERGENIC
SBS Chr10 22980690 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 6555209 A-T Hetero INTERGENIC
SBS Chr11 8842614 C-T Hetero INTERGENIC
SBS Chr11 19383754 G-C Hetero UTR_3_PRIME
SBS Chr12 5739015 T-A Homo INTERGENIC
SBS Chr12 11228819 C-T Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2498767 2498773 6
Deletion Chr12 3297958 3297959 1
Deletion Chr6 3404039 3404045 6
Deletion Chr10 6347883 6347886 3
Deletion Chr7 7007904 7007906 2
Deletion Chr2 9220812 9220818 6 OsKitaake02g115000
Deletion Chr9 9523001 9587000 63999 2
Deletion Chr10 11862430 11862440 10
Deletion Chr7 12389563 12389564 1
Deletion Chr8 12501001 12893000 391999 18
Deletion Chr8 12979745 12979746 1
Deletion Chr2 13987904 13987905 1
Deletion Chr8 15985001 16111000 125999 10
Deletion Chr9 16352257 16352268 11
Deletion Chr8 17227005 17227006 1
Deletion Chr8 19689269 19689270 1
Deletion Chr12 19764936 19764947 11
Deletion Chr8 19790583 19790589 6
Deletion Chr12 20365077 20365090 13
Deletion Chr12 20426764 20426765 1
Deletion Chr2 23974265 23974273 8
Deletion Chr7 24400084 24400101 17
Deletion Chr2 29512380 29512392 12
Deletion Chr2 36567559 36567564 5
Deletion Chr3 36924054 36924061 7

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 24259716 24259719 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2250603 Chr2 4037086
Translocation Chr9 2250940 Chr2 4037089
Translocation Chr7 23427073 Chr1 36102194
Translocation Chr7 23427079 Chr1 36103298

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11673637	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	18983701	G-A	Hetero	INTRON
SBS	Chr1	19471606	C-T	Hetero	INTERGENIC
SBS	Chr1	21772839	G-A	Homo	INTERGENIC
SBS	Chr1	25500929	G-A	Hetero	INTERGENIC
SBS	Chr2	6289551	T-A	Hetero	INTERGENIC
SBS	Chr2	14682078	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	29318111	G-A	Hetero	INTERGENIC
SBS	Chr3	13268136	G-A	Hetero	INTERGENIC
SBS	Chr3	33074560	C-T	Homo	INTERGENIC
SBS	Chr4	18372464	G-A	Hetero	INTERGENIC
SBS	Chr5	7543687	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g075600
SBS	Chr5	17644039	T-A	Homo	INTRON
SBS	Chr5	17644040	G-T	Homo	INTRON
SBS	Chr5	24827713	T-C	Hetero	INTRON
SBS	Chr6	3072166	A-T	Hetero	INTERGENIC
SBS	Chr6	8134936	T-A	Hetero	INTERGENIC
SBS	Chr6	19203451	C-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	15855574	C-A	Hetero	INTERGENIC
SBS	Chr8	19683502	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g144700
SBS	Chr8	22253967	C-A	Hetero	INTERGENIC
SBS	Chr9	3139891	G-A	Hetero	INTERGENIC
SBS	Chr9	17734409	A-T	Hetero	INTERGENIC
SBS	Chr10	750893	G-A	Hetero	INTERGENIC
SBS	Chr10	2789386	A-T	Hetero	INTERGENIC
SBS	Chr10	2970635	G-A	Hetero	INTERGENIC
SBS	Chr10	8807465	C-A	Hetero	INTERGENIC
SBS	Chr10	9217063	T-C	Hetero	INTERGENIC
SBS	Chr10	14117889	C-T	Hetero	INTERGENIC
SBS	Chr10	22980690	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	6555209	A-T	Hetero	INTERGENIC
SBS	Chr11	8842614	C-T	Hetero	INTERGENIC
SBS	Chr11	19383754	G-C	Hetero	UTR_3_PRIME
SBS	Chr12	5739015	T-A	Homo	INTERGENIC
SBS	Chr12	11228819	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2498767	2498773	6
Deletion	Chr12	3297958	3297959	1
Deletion	Chr6	3404039	3404045	6
Deletion	Chr10	6347883	6347886	3
Deletion	Chr7	7007904	7007906	2
Deletion	Chr2	9220812	9220818	6	OsKitaake02g115000
Deletion	Chr9	9523001	9587000	63999	2
Deletion	Chr10	11862430	11862440	10
Deletion	Chr7	12389563	12389564	1
Deletion	Chr8	12501001	12893000	391999	18
Deletion	Chr8	12979745	12979746	1
Deletion	Chr2	13987904	13987905	1
Deletion	Chr8	15985001	16111000	125999	10
Deletion	Chr9	16352257	16352268	11
Deletion	Chr8	17227005	17227006	1
Deletion	Chr8	19689269	19689270	1
Deletion	Chr12	19764936	19764947	11
Deletion	Chr8	19790583	19790589	6
Deletion	Chr12	20365077	20365090	13
Deletion	Chr12	20426764	20426765	1
Deletion	Chr2	23974265	23974273	8
Deletion	Chr7	24400084	24400101	17
Deletion	Chr2	29512380	29512392	12
Deletion	Chr2	36567559	36567564	5
Deletion	Chr3	36924054	36924061	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2250603	Chr2	4037086
Translocation	Chr9	2250940	Chr2	4037089
Translocation	Chr7	23427073	Chr1	36102194
Translocation	Chr7	23427079	Chr1	36103298

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes