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Mutant Information

Mutant Name	FN3175-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3175-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 42150354 G-A Hetero INTERGENIC
SBS Chr2 26822585 T-A Homo INTERGENIC
SBS Chr3 31953656 T-A Hetero INTERGENIC
SBS Chr3 33080729 A-G Hetero INTERGENIC
SBS Chr3 34340434 C-T Hetero UTR_3_PRIME
SBS Chr3 35926440 G-T Hetero INTERGENIC
SBS Chr4 2662990 G-A Hetero INTERGENIC
SBS Chr4 21238964 C-T Homo INTERGENIC
SBS Chr4 26598512 T-G Hetero INTERGENIC
SBS Chr4 27174024 T-A Hetero INTERGENIC
SBS Chr4 30669545 A-G Hetero INTERGENIC
SBS Chr4 35992553 A-T Hetero INTRON
SBS Chr5 5927846 T-A Hetero INTERGENIC
SBS Chr5 7944888 G-A Homo INTERGENIC
SBS Chr5 17944968 A-G Homo INTERGENIC
SBS Chr6 3526928 C-T Hetero INTERGENIC
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 7216482 A-G Homo INTERGENIC
SBS Chr7 14458844 C-T Hetero INTERGENIC
SBS Chr7 15255003 T-A Hetero INTRON
SBS Chr7 20334709 G-A Hetero INTERGENIC
SBS Chr8 452586 A-T Homo UTR_3_PRIME
SBS Chr8 6372275 C-A Hetero INTERGENIC
SBS Chr8 9401287 C-T Hetero INTERGENIC
SBS Chr8 19404422 C-T Hetero INTERGENIC
SBS Chr9 21468742 T-G Hetero INTERGENIC
SBS Chr10 4349846 C-G Hetero INTERGENIC
SBS Chr10 12896838 C-T Homo INTERGENIC
SBS Chr10 16507757 C-T Hetero INTERGENIC
SBS Chr10 16507758 C-T Hetero INTERGENIC
SBS Chr10 16782992 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g114400
SBS Chr10 16782993 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g114400
SBS Chr11 10178413 A-G Hetero INTERGENIC
SBS Chr11 25251160 T-C Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1093655 1093657 2
Deletion Chr5 8916635 8916655 20
Deletion Chr7 13241795 13241798 3
Deletion Chr2 13844476 13844477 1
Deletion Chr1 14898001 14955000 56999 2
Deletion Chr8 16004741 16004743 2
Deletion Chr11 19744001 19773000 28999
Deletion Chr3 22200364 22200365 1
Deletion Chr12 23645218 23645225 7
Deletion Chr2 24512472 24512474 2
Deletion Chr7 28352001 28370000 17999 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11414996 11415000 3
Insertion Chr3 22814123 22814126 2
Insertion Chr6 22281363 22281366 2
Insertion Chr7 15218713 15218715 1
Insertion Chr10 16030280 16030284 3
Insertion Chr1 39814436 39814438 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1771680 Chr3 16097704

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42150354	G-A	Hetero	INTERGENIC
SBS	Chr2	26822585	T-A	Homo	INTERGENIC
SBS	Chr3	31953656	T-A	Hetero	INTERGENIC
SBS	Chr3	33080729	A-G	Hetero	INTERGENIC
SBS	Chr3	34340434	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	35926440	G-T	Hetero	INTERGENIC
SBS	Chr4	2662990	G-A	Hetero	INTERGENIC
SBS	Chr4	21238964	C-T	Homo	INTERGENIC
SBS	Chr4	26598512	T-G	Hetero	INTERGENIC
SBS	Chr4	27174024	T-A	Hetero	INTERGENIC
SBS	Chr4	30669545	A-G	Hetero	INTERGENIC
SBS	Chr4	35992553	A-T	Hetero	INTRON
SBS	Chr5	5927846	T-A	Hetero	INTERGENIC
SBS	Chr5	7944888	G-A	Homo	INTERGENIC
SBS	Chr5	17944968	A-G	Homo	INTERGENIC
SBS	Chr6	3526928	C-T	Hetero	INTERGENIC
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	7216482	A-G	Homo	INTERGENIC
SBS	Chr7	14458844	C-T	Hetero	INTERGENIC
SBS	Chr7	15255003	T-A	Hetero	INTRON
SBS	Chr7	20334709	G-A	Hetero	INTERGENIC
SBS	Chr8	452586	A-T	Homo	UTR_3_PRIME
SBS	Chr8	6372275	C-A	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Hetero	INTERGENIC
SBS	Chr9	21468742	T-G	Hetero	INTERGENIC
SBS	Chr10	4349846	C-G	Hetero	INTERGENIC
SBS	Chr10	12896838	C-T	Homo	INTERGENIC
SBS	Chr10	16507757	C-T	Hetero	INTERGENIC
SBS	Chr10	16507758	C-T	Hetero	INTERGENIC
SBS	Chr10	16782992	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g114400
SBS	Chr10	16782993	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g114400
SBS	Chr11	10178413	A-G	Hetero	INTERGENIC
SBS	Chr11	25251160	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1093655	1093657	2
Deletion	Chr5	8916635	8916655	20
Deletion	Chr7	13241795	13241798	3
Deletion	Chr2	13844476	13844477	1
Deletion	Chr1	14898001	14955000	56999	2
Deletion	Chr8	16004741	16004743	2
Deletion	Chr11	19744001	19773000	28999
Deletion	Chr3	22200364	22200365	1
Deletion	Chr12	23645218	23645225	7
Deletion	Chr2	24512472	24512474	2
Deletion	Chr7	28352001	28370000	17999	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1771680	Chr3	16097704

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes