Search Kitaake

Mutant Information

Mutant Name	FN3176-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3176-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20101758 C-T Hetero INTERGENIC
SBS Chr3 9358807 G-T Hetero INTERGENIC
SBS Chr3 32066304 C-T Homo INTRON
SBS Chr4 13832670 T-C Hetero INTERGENIC
SBS Chr4 24514413 C-T Hetero INTERGENIC
SBS Chr5 10563281 C-A Homo INTERGENIC
SBS Chr6 3776809 G-A Homo INTERGENIC
SBS Chr6 19781888 G-T Hetero INTERGENIC
SBS Chr6 20350215 A-G Hetero UTR_3_PRIME
SBS Chr6 24152706 T-C Hetero INTERGENIC
SBS Chr7 3730168 G-A Homo INTERGENIC
SBS Chr7 13886056 A-T Hetero INTERGENIC
SBS Chr8 6786957 C-A Hetero INTERGENIC
SBS Chr8 7497381 G-T Hetero INTERGENIC
SBS Chr8 13205681 C-T Hetero INTERGENIC
SBS Chr9 17700817 C-T Homo INTRON
SBS Chr10 8952554 G-C Homo INTERGENIC
SBS Chr10 20272295 C-A Hetero INTERGENIC
SBS Chr11 10680464 T-C Hetero INTRON
SBS Chr11 15230390 A-G Hetero INTERGENIC
SBS Chr11 15986444 G-T Homo INTERGENIC
SBS Chr12 12530477 G-T Homo INTERGENIC
SBS Chr12 12592674 C-T Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 11193001 11198000 4999 OsKitaake01g137600
Deletion Chr12 11435400 11435404 4
Deletion Chr8 18161509 18161515 6
Deletion Chr8 22323042 22323054 12
Deletion Chr8 22565940 22565942 2
Deletion Chr2 23685964 23685975 11

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11044326 11044329 2
Insertion Chr2 18357018 18357022 3
Insertion Chr4 33669529 33669532 2
Insertion Chr5 345183 345186 2
Insertion Chr5 22369061 22369065 3
Insertion Chr5 22751464 22751475 10
Insertion Chr6 16377655 16377658 2
Insertion Chr6 20622542 20622545 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1954045 Chr3 15446250

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20101758	C-T	Hetero	INTERGENIC
SBS	Chr3	9358807	G-T	Hetero	INTERGENIC
SBS	Chr3	32066304	C-T	Homo	INTRON
SBS	Chr4	13832670	T-C	Hetero	INTERGENIC
SBS	Chr4	24514413	C-T	Hetero	INTERGENIC
SBS	Chr5	10563281	C-A	Homo	INTERGENIC
SBS	Chr6	3776809	G-A	Homo	INTERGENIC
SBS	Chr6	19781888	G-T	Hetero	INTERGENIC
SBS	Chr6	20350215	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	24152706	T-C	Hetero	INTERGENIC
SBS	Chr7	3730168	G-A	Homo	INTERGENIC
SBS	Chr7	13886056	A-T	Hetero	INTERGENIC
SBS	Chr8	6786957	C-A	Hetero	INTERGENIC
SBS	Chr8	7497381	G-T	Hetero	INTERGENIC
SBS	Chr8	13205681	C-T	Hetero	INTERGENIC
SBS	Chr9	17700817	C-T	Homo	INTRON
SBS	Chr10	8952554	G-C	Homo	INTERGENIC
SBS	Chr10	20272295	C-A	Hetero	INTERGENIC
SBS	Chr11	10680464	T-C	Hetero	INTRON
SBS	Chr11	15230390	A-G	Hetero	INTERGENIC
SBS	Chr11	15986444	G-T	Homo	INTERGENIC
SBS	Chr12	12530477	G-T	Homo	INTERGENIC
SBS	Chr12	12592674	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	11193001	11198000	4999	OsKitaake01g137600
Deletion	Chr12	11435400	11435404	4
Deletion	Chr8	18161509	18161515	6
Deletion	Chr8	22323042	22323054	12
Deletion	Chr8	22565940	22565942	2
Deletion	Chr2	23685964	23685975	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1954045	Chr3	15446250

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes