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Mutant Information

Mutant Name	FN3177-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3177-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11013123 C-T Homo INTERGENIC
SBS Chr1 11262602 C-T Hetero INTERGENIC
SBS Chr1 14500439 C-T Homo INTERGENIC
SBS Chr1 26852178 T-C Hetero INTERGENIC
SBS Chr1 27491955 G-A Hetero UTR_5_PRIME
SBS Chr2 1784051 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 3820288 G-A Hetero INTERGENIC
SBS Chr2 22079347 A-G Homo INTERGENIC
SBS Chr2 31770786 G-C Hetero INTERGENIC
SBS Chr3 1221731 C-G Hetero INTERGENIC
SBS Chr3 9198953 C-T Hetero INTRON
SBS Chr3 12043514 T-A Hetero INTRON
SBS Chr3 14735464 A-G Hetero INTERGENIC
SBS Chr3 15376096 A-C Hetero INTERGENIC
SBS Chr3 25430931 C-T Hetero INTERGENIC
SBS Chr3 26381756 C-T Hetero INTRON
SBS Chr3 29122455 G-C Hetero INTERGENIC
SBS Chr3 35693058 G-A Homo INTERGENIC
SBS Chr4 5180557 A-T Hetero INTERGENIC
SBS Chr4 9430859 T-A Hetero INTERGENIC
SBS Chr4 14161735 A-T Hetero INTERGENIC
SBS Chr4 22022429 C-T Homo INTERGENIC
SBS Chr5 8509985 G-A Homo INTERGENIC
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 24901553 G-T Hetero INTERGENIC
SBS Chr6 24901554 C-T Hetero INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 10154844 A-G Homo INTERGENIC
SBS Chr7 17566622 G-T Hetero INTERGENIC
SBS Chr7 17566623 A-T Hetero INTERGENIC
SBS Chr7 23036558 A-T Hetero INTRON
SBS Chr8 4146173 C-A Hetero INTERGENIC
SBS Chr8 11541946 G-A Homo INTERGENIC
SBS Chr9 7796051 C-T Hetero INTERGENIC
SBS Chr10 10209558 C-A Hetero INTERGENIC
SBS Chr10 10209559 T-A Hetero INTERGENIC
SBS Chr11 8462142 C-T Homo INTERGENIC
SBS Chr12 1689375 C-A Hetero INTERGENIC
SBS Chr12 7804257 T-A Hetero INTERGENIC
SBS Chr12 19347084 C-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 171241 171244 3
Deletion Chr1 888151 888164 13
Deletion Chr3 2438315 2438316 1
Deletion Chr1 4297891 4297893 2
Deletion Chr5 8529789 8529793 4
Deletion Chr3 9196589 9196590 1
Deletion Chr9 9739340 9739342 2
Deletion Chr11 9929622 9929624 2
Deletion Chr7 13080045 13080046 1
Deletion Chr8 13455999 13456001 2 OsKitaake08g110460
Deletion Chr11 16917910 16917912 2
Deletion Chr12 18265135 18265139 4
Deletion Chr3 19345849 19345850 1
Deletion Chr4 22398091 22398097 6
Deletion Chr6 29718001 29727000 8999 3
Deletion Chr3 31134698 31134699 1
Deletion Chr3 35680353 35680360 7
Deletion Chr1 36848218 36848220 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23184758 23184761 2
Insertion Chr6 16503527 16503530 2
Insertion Chr7 26474452 26474455 2
Insertion Chr12 24840164 24840167 2
Insertion Chr7 11985037 11985039 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4409780 5081388 2
Inversion Chr2 4487013 5080201 2
Inversion Chr1 16393927 16462219 OsKitaake01g176100
Inversion Chr6 29689832 29717984 2
Inversion Chr6 29690336 29727028 OsKitaake06g276600

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2803989 Chr1 16392620 OsKitaake01g176100
Translocation Chr8 2803992 Chr1 16393920 OsKitaake01g176100
Translocation Chr8 2803993 Chr7 4020478
Translocation Chr7 4020651 Chr1 16393919 OsKitaake01g176100
Translocation Chr6 25394670 Chr1 16470931
Translocation Chr6 25394673 Chr1 16468504 OsKitaake01g176500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11013123	C-T	Homo	INTERGENIC
SBS	Chr1	11262602	C-T	Hetero	INTERGENIC
SBS	Chr1	14500439	C-T	Homo	INTERGENIC
SBS	Chr1	26852178	T-C	Hetero	INTERGENIC
SBS	Chr1	27491955	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	1784051	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3820288	G-A	Hetero	INTERGENIC
SBS	Chr2	22079347	A-G	Homo	INTERGENIC
SBS	Chr2	31770786	G-C	Hetero	INTERGENIC
SBS	Chr3	1221731	C-G	Hetero	INTERGENIC
SBS	Chr3	9198953	C-T	Hetero	INTRON
SBS	Chr3	12043514	T-A	Hetero	INTRON
SBS	Chr3	14735464	A-G	Hetero	INTERGENIC
SBS	Chr3	15376096	A-C	Hetero	INTERGENIC
SBS	Chr3	25430931	C-T	Hetero	INTERGENIC
SBS	Chr3	26381756	C-T	Hetero	INTRON
SBS	Chr3	29122455	G-C	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Homo	INTERGENIC
SBS	Chr4	5180557	A-T	Hetero	INTERGENIC
SBS	Chr4	9430859	T-A	Hetero	INTERGENIC
SBS	Chr4	14161735	A-T	Hetero	INTERGENIC
SBS	Chr4	22022429	C-T	Homo	INTERGENIC
SBS	Chr5	8509985	G-A	Homo	INTERGENIC
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	24901553	G-T	Hetero	INTERGENIC
SBS	Chr6	24901554	C-T	Hetero	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	10154844	A-G	Homo	INTERGENIC
SBS	Chr7	17566622	G-T	Hetero	INTERGENIC
SBS	Chr7	17566623	A-T	Hetero	INTERGENIC
SBS	Chr7	23036558	A-T	Hetero	INTRON
SBS	Chr8	4146173	C-A	Hetero	INTERGENIC
SBS	Chr8	11541946	G-A	Homo	INTERGENIC
SBS	Chr9	7796051	C-T	Hetero	INTERGENIC
SBS	Chr10	10209558	C-A	Hetero	INTERGENIC
SBS	Chr10	10209559	T-A	Hetero	INTERGENIC
SBS	Chr11	8462142	C-T	Homo	INTERGENIC
SBS	Chr12	1689375	C-A	Hetero	INTERGENIC
SBS	Chr12	7804257	T-A	Hetero	INTERGENIC
SBS	Chr12	19347084	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	171241	171244	3
Deletion	Chr1	888151	888164	13
Deletion	Chr3	2438315	2438316	1
Deletion	Chr1	4297891	4297893	2
Deletion	Chr5	8529789	8529793	4
Deletion	Chr3	9196589	9196590	1
Deletion	Chr9	9739340	9739342	2
Deletion	Chr11	9929622	9929624	2
Deletion	Chr7	13080045	13080046	1
Deletion	Chr8	13455999	13456001	2	OsKitaake08g110460
Deletion	Chr11	16917910	16917912	2
Deletion	Chr12	18265135	18265139	4
Deletion	Chr3	19345849	19345850	1
Deletion	Chr4	22398091	22398097	6
Deletion	Chr6	29718001	29727000	8999	3
Deletion	Chr3	31134698	31134699	1
Deletion	Chr3	35680353	35680360	7
Deletion	Chr1	36848218	36848220	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4409780	5081388	2
Inversion	Chr2	4487013	5080201	2
Inversion	Chr1	16393927	16462219	OsKitaake01g176100
Inversion	Chr6	29689832	29717984	2
Inversion	Chr6	29690336	29727028	OsKitaake06g276600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes