Search Kitaake

Mutant Information

Mutant Name	FN3178-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3178-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1558223 T-A Hetero INTERGENIC
SBS Chr1 6463900 T-A Homo INTERGENIC
SBS Chr1 7269259 G-A Hetero INTERGENIC
SBS Chr1 23304523 G-A Hetero INTERGENIC
SBS Chr2 10920120 G-A Hetero INTERGENIC
SBS Chr2 33661263 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g348000
SBS Chr3 15750487 G-A Hetero INTERGENIC
SBS Chr3 35260713 G-A Homo SYNONYMOUS_CODING
SBS Chr3 36082469 G-C Homo INTERGENIC
SBS Chr4 2327283 A-T Hetero INTERGENIC
SBS Chr4 26241642 G-T Homo INTERGENIC
SBS Chr5 9336733 T-A Hetero INTERGENIC
SBS Chr5 11136945 G-A Hetero INTERGENIC
SBS Chr5 16023441 C-T Hetero INTERGENIC
SBS Chr6 7713245 G-A Homo INTERGENIC
SBS Chr7 17516620 T-C Hetero INTERGENIC
SBS Chr7 22582046 G-A Homo INTERGENIC
SBS Chr8 10722053 G-C Hetero INTERGENIC
SBS Chr8 20566023 A-T Homo INTERGENIC
SBS Chr8 20566024 C-T Homo INTERGENIC
SBS Chr8 20600655 T-A Homo INTERGENIC
SBS Chr8 24347617 T-C Hetero INTERGENIC
SBS Chr8 28616728 T-A Hetero INTRON
SBS Chr9 12582359 G-C Homo INTERGENIC
SBS Chr9 20220151 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g170100
SBS Chr10 17942176 A-G Homo INTERGENIC
SBS Chr11 9401191 T-C Hetero INTERGENIC
SBS Chr11 9837966 C-A Hetero INTERGENIC
SBS Chr11 9837967 C-A Hetero INTERGENIC
SBS Chr11 11513091 C-T Hetero INTERGENIC
SBS Chr11 13222084 C-G Hetero INTERGENIC
SBS Chr11 23847737 G-A Hetero INTERGENIC
SBS Chr12 8538837 A-T Hetero INTERGENIC
SBS Chr12 20637500 G-A Hetero INTERGENIC
SBS Chr12 25354628 A-G Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4339214 4339215 1
Deletion Chr11 4545257 4545259 2
Deletion Chr5 4644001 4770000 125999 6
Deletion Chr3 4757325 4757333 8
Deletion Chr9 10016281 10016283 2
Deletion Chr2 13492073 13492074 1
Deletion Chr12 14510567 14510571 4
Deletion Chr8 15083904 15083905 1
Deletion Chr2 15690001 15704000 13999 2
Deletion Chr5 17181878 17181880 2
Deletion Chr2 20078001 20299000 220999 22
Deletion Chr2 20301001 20952000 650999 56
Deletion Chr2 24511340 24511342 2
Deletion Chr8 25829358 25829361 3
Deletion Chr6 27499318 27499319 1
Deletion Chr3 36917718 36917723 5
Deletion Chr3 37667642 37667646 4 OsKitaake03g423100
Deletion Chr1 37820132 37820133 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 25714114 25714116 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 4644190 5315626
Inversion Chr5 5315636 5725685
Inversion Chr4 23253164 23822349 OsKitaake04g151000

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11797723 Chr2 15704907 OsKitaake06g128500
Translocation Chr10 17440300 Chr6 11785444 OsKitaake10g118900
Translocation Chr4 23253196 Chr2 15673595
Translocation Chr4 29874453 Chr1 18426010 OsKitaake04g229500
Translocation Chr4 29880921 Chr1 18426006 OsKitaake04g229500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1558223	T-A	Hetero	INTERGENIC
SBS	Chr1	6463900	T-A	Homo	INTERGENIC
SBS	Chr1	7269259	G-A	Hetero	INTERGENIC
SBS	Chr1	23304523	G-A	Hetero	INTERGENIC
SBS	Chr2	10920120	G-A	Hetero	INTERGENIC
SBS	Chr2	33661263	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g348000
SBS	Chr3	15750487	G-A	Hetero	INTERGENIC
SBS	Chr3	35260713	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	36082469	G-C	Homo	INTERGENIC
SBS	Chr4	2327283	A-T	Hetero	INTERGENIC
SBS	Chr4	26241642	G-T	Homo	INTERGENIC
SBS	Chr5	9336733	T-A	Hetero	INTERGENIC
SBS	Chr5	11136945	G-A	Hetero	INTERGENIC
SBS	Chr5	16023441	C-T	Hetero	INTERGENIC
SBS	Chr6	7713245	G-A	Homo	INTERGENIC
SBS	Chr7	17516620	T-C	Hetero	INTERGENIC
SBS	Chr7	22582046	G-A	Homo	INTERGENIC
SBS	Chr8	10722053	G-C	Hetero	INTERGENIC
SBS	Chr8	20566023	A-T	Homo	INTERGENIC
SBS	Chr8	20566024	C-T	Homo	INTERGENIC
SBS	Chr8	20600655	T-A	Homo	INTERGENIC
SBS	Chr8	24347617	T-C	Hetero	INTERGENIC
SBS	Chr8	28616728	T-A	Hetero	INTRON
SBS	Chr9	12582359	G-C	Homo	INTERGENIC
SBS	Chr9	20220151	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g170100
SBS	Chr10	17942176	A-G	Homo	INTERGENIC
SBS	Chr11	9401191	T-C	Hetero	INTERGENIC
SBS	Chr11	9837966	C-A	Hetero	INTERGENIC
SBS	Chr11	9837967	C-A	Hetero	INTERGENIC
SBS	Chr11	11513091	C-T	Hetero	INTERGENIC
SBS	Chr11	13222084	C-G	Hetero	INTERGENIC
SBS	Chr11	23847737	G-A	Hetero	INTERGENIC
SBS	Chr12	8538837	A-T	Hetero	INTERGENIC
SBS	Chr12	20637500	G-A	Hetero	INTERGENIC
SBS	Chr12	25354628	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4339214	4339215	1
Deletion	Chr11	4545257	4545259	2
Deletion	Chr5	4644001	4770000	125999	6
Deletion	Chr3	4757325	4757333	8
Deletion	Chr9	10016281	10016283	2
Deletion	Chr2	13492073	13492074	1
Deletion	Chr12	14510567	14510571	4
Deletion	Chr8	15083904	15083905	1
Deletion	Chr2	15690001	15704000	13999	2
Deletion	Chr5	17181878	17181880	2
Deletion	Chr2	20078001	20299000	220999	22
Deletion	Chr2	20301001	20952000	650999	56
Deletion	Chr2	24511340	24511342	2
Deletion	Chr8	25829358	25829361	3
Deletion	Chr6	27499318	27499319	1
Deletion	Chr3	36917718	36917723	5
Deletion	Chr3	37667642	37667646	4	OsKitaake03g423100
Deletion	Chr1	37820132	37820133	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4644190	5315626
Inversion	Chr5	5315636	5725685
Inversion	Chr4	23253164	23822349	OsKitaake04g151000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes