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Mutant Information

Mutant Name	FN3179-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3179-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3154876 C-T Hetero INTERGENIC
SBS Chr1 14790807 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g167300
SBS Chr1 18405935 G-A Hetero INTERGENIC
SBS Chr1 22517473 A-G Hetero INTRON
SBS Chr1 30491792 G-A Hetero INTERGENIC
SBS Chr2 8783809 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g111000
SBS Chr2 11506610 T-G Hetero INTERGENIC
SBS Chr2 14027218 C-A Hetero INTERGENIC
SBS Chr2 18598859 A-C Hetero INTERGENIC
SBS Chr2 19253796 C-T Hetero INTERGENIC
SBS Chr2 21076743 T-C Hetero INTRON
SBS Chr3 9942669 C-A Homo INTRON
SBS Chr3 10051450 C-T Hetero INTERGENIC
SBS Chr3 10051451 C-T Hetero INTERGENIC
SBS Chr3 12810132 G-A Hetero INTERGENIC
SBS Chr3 17332840 T-A Hetero INTERGENIC
SBS Chr3 18682846 A-T Hetero INTERGENIC
SBS Chr3 18682847 A-T Hetero INTERGENIC
SBS Chr3 19258693 T-C Homo INTERGENIC
SBS Chr3 22652945 G-T Hetero INTERGENIC
SBS Chr3 26755307 G-T Hetero INTERGENIC
SBS Chr4 1720273 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g011300
SBS Chr4 6521053 C-A Hetero INTERGENIC
SBS Chr4 15619966 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g075100
SBS Chr4 30337809 C-G Hetero INTERGENIC
SBS Chr5 25896138 C-T Homo INTERGENIC
SBS Chr6 14441115 C-T Homo INTERGENIC
SBS Chr6 17845785 G-A Homo INTERGENIC
SBS Chr6 19905431 T-G Homo INTERGENIC
SBS Chr6 25816140 T-C Hetero INTRON
SBS Chr7 14915435 C-T Hetero INTERGENIC
SBS Chr8 6688210 G-T Hetero INTERGENIC
SBS Chr8 25392922 A-G Homo INTERGENIC
SBS Chr9 1895497 G-A Hetero INTERGENIC
SBS Chr9 6721899 T-A Hetero INTERGENIC
SBS Chr10 9172911 G-A Hetero INTERGENIC
SBS Chr10 12817585 C-T Hetero INTERGENIC
SBS Chr12 3471541 A-G Hetero INTERGENIC
SBS Chr12 9199301 G-T Hetero INTERGENIC
SBS Chr12 14162461 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1347318 1347320 2
Deletion Chr8 16278810 16278811 1
Deletion Chr2 23913948 23913949 1
Deletion Chr2 25108264 25108265 1
Deletion Chr2 36518001 36532000 13999 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38891905 38891908 2
Insertion Chr7 27530394 27530397 2
Insertion Chr10 16403060 16403063 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16000201 16965079
Inversion Chr2 20938710 21077028 OsKitaake02g202900
Inversion Chr2 20938719 21077042 OsKitaake02g202900
Inversion Chr3 34514678 34600639
Inversion Chr3 34514680 34600639

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3154876	C-T	Hetero	INTERGENIC
SBS	Chr1	14790807	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g167300
SBS	Chr1	18405935	G-A	Hetero	INTERGENIC
SBS	Chr1	22517473	A-G	Hetero	INTRON
SBS	Chr1	30491792	G-A	Hetero	INTERGENIC
SBS	Chr2	8783809	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g111000
SBS	Chr2	11506610	T-G	Hetero	INTERGENIC
SBS	Chr2	14027218	C-A	Hetero	INTERGENIC
SBS	Chr2	18598859	A-C	Hetero	INTERGENIC
SBS	Chr2	19253796	C-T	Hetero	INTERGENIC
SBS	Chr2	21076743	T-C	Hetero	INTRON
SBS	Chr3	9942669	C-A	Homo	INTRON
SBS	Chr3	10051450	C-T	Hetero	INTERGENIC
SBS	Chr3	10051451	C-T	Hetero	INTERGENIC
SBS	Chr3	12810132	G-A	Hetero	INTERGENIC
SBS	Chr3	17332840	T-A	Hetero	INTERGENIC
SBS	Chr3	18682846	A-T	Hetero	INTERGENIC
SBS	Chr3	18682847	A-T	Hetero	INTERGENIC
SBS	Chr3	19258693	T-C	Homo	INTERGENIC
SBS	Chr3	22652945	G-T	Hetero	INTERGENIC
SBS	Chr3	26755307	G-T	Hetero	INTERGENIC
SBS	Chr4	1720273	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g011300
SBS	Chr4	6521053	C-A	Hetero	INTERGENIC
SBS	Chr4	15619966	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g075100
SBS	Chr4	30337809	C-G	Hetero	INTERGENIC
SBS	Chr5	25896138	C-T	Homo	INTERGENIC
SBS	Chr6	14441115	C-T	Homo	INTERGENIC
SBS	Chr6	17845785	G-A	Homo	INTERGENIC
SBS	Chr6	19905431	T-G	Homo	INTERGENIC
SBS	Chr6	25816140	T-C	Hetero	INTRON
SBS	Chr7	14915435	C-T	Hetero	INTERGENIC
SBS	Chr8	6688210	G-T	Hetero	INTERGENIC
SBS	Chr8	25392922	A-G	Homo	INTERGENIC
SBS	Chr9	1895497	G-A	Hetero	INTERGENIC
SBS	Chr9	6721899	T-A	Hetero	INTERGENIC
SBS	Chr10	9172911	G-A	Hetero	INTERGENIC
SBS	Chr10	12817585	C-T	Hetero	INTERGENIC
SBS	Chr12	3471541	A-G	Hetero	INTERGENIC
SBS	Chr12	9199301	G-T	Hetero	INTERGENIC
SBS	Chr12	14162461	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1347318	1347320	2
Deletion	Chr8	16278810	16278811	1
Deletion	Chr2	23913948	23913949	1
Deletion	Chr2	25108264	25108265	1
Deletion	Chr2	36518001	36532000	13999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16000201	16965079
Inversion	Chr2	20938710	21077028	OsKitaake02g202900
Inversion	Chr2	20938719	21077042	OsKitaake02g202900
Inversion	Chr3	34514678	34600639
Inversion	Chr3	34514680	34600639

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes