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Mutant Information

Mutant Name	FN318-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN318-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2220384 C-T Homo INTERGENIC
SBS Chr1 17113029 C-T Homo INTERGENIC
SBS Chr1 19421612 C-T Hetero INTERGENIC
SBS Chr3 5497383 C-T Hetero UTR_5_PRIME
SBS Chr3 12467233 C-A Hetero INTERGENIC
SBS Chr3 26885517 G-T Hetero INTERGENIC
SBS Chr3 27407338 C-G Hetero SYNONYMOUS_CODING
SBS Chr4 954142 A-T Hetero INTERGENIC
SBS Chr4 3934842 T-A Hetero INTERGENIC
SBS Chr4 6239182 G-A Hetero INTERGENIC
SBS Chr4 8026494 G-T Homo INTERGENIC
SBS Chr4 18072560 G-T Homo INTERGENIC
SBS Chr4 18214048 T-G Homo INTERGENIC
SBS Chr4 25173940 C-T Hetero INTERGENIC
SBS Chr4 28495293 A-G Hetero INTERGENIC
SBS Chr4 31766149 A-G Hetero INTRON
SBS Chr5 4426618 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g051400
SBS Chr5 14236570 C-T Homo INTERGENIC
SBS Chr6 6534950 G-A Homo INTERGENIC
SBS Chr6 28222066 C-G Homo INTERGENIC
SBS Chr7 2368768 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g032301
SBS Chr7 2368769 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g032301
SBS Chr7 19591827 G-A Homo INTRON
SBS Chr7 29003846 T-A Hetero INTERGENIC
SBS Chr7 29003847 G-A Hetero INTERGENIC
SBS Chr8 8536152 A-C Hetero INTERGENIC
SBS Chr8 20555529 T-A Hetero INTERGENIC
SBS Chr8 25694384 T-G Hetero INTERGENIC
SBS Chr9 21872946 T-C Hetero INTRON
SBS Chr10 3747542 G-A Hetero INTERGENIC
SBS Chr11 13034808 G-C Hetero INTERGENIC
SBS Chr11 20381048 C-A Hetero INTERGENIC
SBS Chr12 2772457 A-T Hetero UTR_3_PRIME
SBS Chr12 16759130 T-A Hetero INTERGENIC
SBS Chr12 18450561 A-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2864062 2864063 1
Deletion Chr4 2984600 2984603 3
Deletion Chr2 5017597 5017599 2
Deletion Chr10 7592271 7592276 5
Deletion Chr5 7745678 7745686 8
Deletion Chr8 8871790 8871791 1
Deletion Chr2 9279001 9524000 244999 8
Deletion Chr7 10300001 10540000 239999 6
Deletion Chr7 10551001 10581000 29999 OsKitaake07g101500
Deletion Chr3 11757665 11757678 13 OsKitaake03g159700
Deletion Chr12 15476001 15642000 165999 12
Deletion Chr4 18287935 18287937 2
Deletion Chr7 21109748 21109755 7
Deletion Chr7 24181624 24181626 2
Deletion Chr2 24395562 24395566 4
Deletion Chr5 26063525 26063530 5
Deletion Chr1 27513795 27513798 3 OsKitaake01g267700
Deletion Chr3 28974373 28974380 7
Deletion Chr4 31692058 31692061 3
Deletion Chr3 34579459 34579461 2
Deletion Chr1 41280352 41280353 1
Deletion Chr1 43338741 43338744 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25537567 25537570 2
Insertion Chr5 6403063 6403066 2
Insertion Chr8 3294440 3294445 4

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7349713 Chr5 11279582
Translocation Chr6 7349861 Chr5 11279472
Translocation Chr2 10384002 Chr1 19123117 OsKitaake01g191600
Translocation Chr7 10460299 Chr2 23474912
Translocation Chr7 10536058 Chr3 5011171

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2220384	C-T	Homo	INTERGENIC
SBS	Chr1	17113029	C-T	Homo	INTERGENIC
SBS	Chr1	19421612	C-T	Hetero	INTERGENIC
SBS	Chr3	5497383	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	12467233	C-A	Hetero	INTERGENIC
SBS	Chr3	26885517	G-T	Hetero	INTERGENIC
SBS	Chr3	27407338	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	954142	A-T	Hetero	INTERGENIC
SBS	Chr4	3934842	T-A	Hetero	INTERGENIC
SBS	Chr4	6239182	G-A	Hetero	INTERGENIC
SBS	Chr4	8026494	G-T	Homo	INTERGENIC
SBS	Chr4	18072560	G-T	Homo	INTERGENIC
SBS	Chr4	18214048	T-G	Homo	INTERGENIC
SBS	Chr4	25173940	C-T	Hetero	INTERGENIC
SBS	Chr4	28495293	A-G	Hetero	INTERGENIC
SBS	Chr4	31766149	A-G	Hetero	INTRON
SBS	Chr5	4426618	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g051400
SBS	Chr5	14236570	C-T	Homo	INTERGENIC
SBS	Chr6	6534950	G-A	Homo	INTERGENIC
SBS	Chr6	28222066	C-G	Homo	INTERGENIC
SBS	Chr7	2368768	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g032301
SBS	Chr7	2368769	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g032301
SBS	Chr7	19591827	G-A	Homo	INTRON
SBS	Chr7	29003846	T-A	Hetero	INTERGENIC
SBS	Chr7	29003847	G-A	Hetero	INTERGENIC
SBS	Chr8	8536152	A-C	Hetero	INTERGENIC
SBS	Chr8	20555529	T-A	Hetero	INTERGENIC
SBS	Chr8	25694384	T-G	Hetero	INTERGENIC
SBS	Chr9	21872946	T-C	Hetero	INTRON
SBS	Chr10	3747542	G-A	Hetero	INTERGENIC
SBS	Chr11	13034808	G-C	Hetero	INTERGENIC
SBS	Chr11	20381048	C-A	Hetero	INTERGENIC
SBS	Chr12	2772457	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	16759130	T-A	Hetero	INTERGENIC
SBS	Chr12	18450561	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2864062	2864063	1
Deletion	Chr4	2984600	2984603	3
Deletion	Chr2	5017597	5017599	2
Deletion	Chr10	7592271	7592276	5
Deletion	Chr5	7745678	7745686	8
Deletion	Chr8	8871790	8871791	1
Deletion	Chr2	9279001	9524000	244999	8
Deletion	Chr7	10300001	10540000	239999	6
Deletion	Chr7	10551001	10581000	29999	OsKitaake07g101500
Deletion	Chr3	11757665	11757678	13	OsKitaake03g159700
Deletion	Chr12	15476001	15642000	165999	12
Deletion	Chr4	18287935	18287937	2
Deletion	Chr7	21109748	21109755	7
Deletion	Chr7	24181624	24181626	2
Deletion	Chr2	24395562	24395566	4
Deletion	Chr5	26063525	26063530	5
Deletion	Chr1	27513795	27513798	3	OsKitaake01g267700
Deletion	Chr3	28974373	28974380	7
Deletion	Chr4	31692058	31692061	3
Deletion	Chr3	34579459	34579461	2
Deletion	Chr1	41280352	41280353	1
Deletion	Chr1	43338741	43338744	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	7349713	Chr5	11279582
Translocation	Chr6	7349861	Chr5	11279472
Translocation	Chr2	10384002	Chr1	19123117	OsKitaake01g191600
Translocation	Chr7	10460299	Chr2	23474912
Translocation	Chr7	10536058	Chr3	5011171

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes