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Mutant Information

Mutant Name	FN3181-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3181-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29500616 C-T Homo INTRON
SBS Chr1 41422647 C-T Hetero INTERGENIC
SBS Chr2 2880728 A-T Hetero INTRON
SBS Chr2 17661699 C-T Hetero INTERGENIC
SBS Chr2 18172613 G-A Hetero INTERGENIC
SBS Chr2 18253887 A-G Hetero INTERGENIC
SBS Chr2 19038303 G-A Hetero INTERGENIC
SBS Chr2 35901456 A-T Hetero INTERGENIC
SBS Chr3 1181179 A-C Hetero INTERGENIC
SBS Chr3 20581028 C-T Hetero INTERGENIC
SBS Chr3 29700090 G-A Homo UTR_3_PRIME
SBS Chr3 31377971 C-T Homo UTR_5_PRIME
SBS Chr4 4456932 C-G Homo INTERGENIC
SBS Chr4 18754496 G-A Hetero INTRON
SBS Chr4 31167704 A-C Hetero INTERGENIC
SBS Chr5 13456784 G-A Hetero INTRON
SBS Chr5 13456785 T-A Hetero INTRON
SBS Chr5 14968746 C-G Hetero INTERGENIC
SBS Chr5 22588497 G-A Hetero INTERGENIC
SBS Chr6 1188338 C-G Hetero START_GAINED
SBS Chr6 19050987 C-T Hetero INTERGENIC
SBS Chr6 26020050 T-C Hetero INTERGENIC
SBS Chr7 10841874 T-C Hetero INTERGENIC
SBS Chr7 19571962 A-G Homo INTERGENIC
SBS Chr8 8145159 A-G Hetero UTR_5_PRIME
SBS Chr10 10713402 G-A Hetero INTERGENIC
SBS Chr11 2940526 A-T Homo NON_SYNONYMOUS_CODING OsKitaake11g041600
SBS Chr11 25873768 T-C Hetero INTERGENIC
SBS Chr11 28349435 G-A Hetero INTERGENIC
SBS Chr12 4325814 A-T Homo INTERGENIC
SBS Chr12 7775798 G-T Homo SYNONYMOUS_CODING
SBS Chr12 21199926 C-T Hetero INTERGENIC
SBS Chr12 23151295 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g184700

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1605756 1605769 13
Deletion Chr6 1651042 1651049 7
Deletion Chr8 2334934 2334938 4
Deletion Chr2 3080966 3080968 2
Deletion Chr11 3706077 3706085 8
Deletion Chr6 5682607 5682610 3
Deletion Chr2 10266413 10266415 2
Deletion Chr7 13722001 13726000 3999
Deletion Chr1 14197918 14197921 3
Deletion Chr5 18462001 18755000 292999 20
Deletion Chr5 18775001 18890000 114999 14
Deletion Chr12 19423201 19423202 1
Deletion Chr7 19647215 19647216 1
Deletion Chr6 20348341 20348344 3
Deletion Chr4 22303907 22303912 5
Deletion Chr5 23047920 23047926 6
Deletion Chr8 24235475 24235480 5
Deletion Chr8 26456767 26456772 5
Deletion Chr7 26985509 26985515 6
Deletion Chr7 27317505 27317518 13
Deletion Chr6 27540693 27540694 1
Deletion Chr11 29318363 29318454 91
Deletion Chr2 29915322 29915323 1

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3754279 3754282 2
Insertion Chr1 42653754 42653757 2
Insertion Chr2 10327426 10327429 2
Insertion Chr4 20695310 20695312 1
Insertion Chr5 18259636 18259639 2
Insertion Chr5 23342413 23342417 3
Insertion Chr6 13177019 13177022 2
Insertion Chr7 4036415 4036418 2
Insertion Chr7 10622903 10622906 2
Insertion Chr8 15510718 15510721 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4832799 5214538
Inversion Chr12 4832802 5214554
Inversion Chr1 29202426 29383674 OsKitaake01g287600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 321371 Chr1 18768664
Translocation Chr5 321374 Chr1 18769086

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29500616	C-T	Homo	INTRON
SBS	Chr1	41422647	C-T	Hetero	INTERGENIC
SBS	Chr2	2880728	A-T	Hetero	INTRON
SBS	Chr2	17661699	C-T	Hetero	INTERGENIC
SBS	Chr2	18172613	G-A	Hetero	INTERGENIC
SBS	Chr2	18253887	A-G	Hetero	INTERGENIC
SBS	Chr2	19038303	G-A	Hetero	INTERGENIC
SBS	Chr2	35901456	A-T	Hetero	INTERGENIC
SBS	Chr3	1181179	A-C	Hetero	INTERGENIC
SBS	Chr3	20581028	C-T	Hetero	INTERGENIC
SBS	Chr3	29700090	G-A	Homo	UTR_3_PRIME
SBS	Chr3	31377971	C-T	Homo	UTR_5_PRIME
SBS	Chr4	4456932	C-G	Homo	INTERGENIC
SBS	Chr4	18754496	G-A	Hetero	INTRON
SBS	Chr4	31167704	A-C	Hetero	INTERGENIC
SBS	Chr5	13456784	G-A	Hetero	INTRON
SBS	Chr5	13456785	T-A	Hetero	INTRON
SBS	Chr5	14968746	C-G	Hetero	INTERGENIC
SBS	Chr5	22588497	G-A	Hetero	INTERGENIC
SBS	Chr6	1188338	C-G	Hetero	START_GAINED
SBS	Chr6	19050987	C-T	Hetero	INTERGENIC
SBS	Chr6	26020050	T-C	Hetero	INTERGENIC
SBS	Chr7	10841874	T-C	Hetero	INTERGENIC
SBS	Chr7	19571962	A-G	Homo	INTERGENIC
SBS	Chr8	8145159	A-G	Hetero	UTR_5_PRIME
SBS	Chr10	10713402	G-A	Hetero	INTERGENIC
SBS	Chr11	2940526	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g041600
SBS	Chr11	25873768	T-C	Hetero	INTERGENIC
SBS	Chr11	28349435	G-A	Hetero	INTERGENIC
SBS	Chr12	4325814	A-T	Homo	INTERGENIC
SBS	Chr12	7775798	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	21199926	C-T	Hetero	INTERGENIC
SBS	Chr12	23151295	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g184700

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1605756	1605769	13
Deletion	Chr6	1651042	1651049	7
Deletion	Chr8	2334934	2334938	4
Deletion	Chr2	3080966	3080968	2
Deletion	Chr11	3706077	3706085	8
Deletion	Chr6	5682607	5682610	3
Deletion	Chr2	10266413	10266415	2
Deletion	Chr7	13722001	13726000	3999
Deletion	Chr1	14197918	14197921	3
Deletion	Chr5	18462001	18755000	292999	20
Deletion	Chr5	18775001	18890000	114999	14
Deletion	Chr12	19423201	19423202	1
Deletion	Chr7	19647215	19647216	1
Deletion	Chr6	20348341	20348344	3
Deletion	Chr4	22303907	22303912	5
Deletion	Chr5	23047920	23047926	6
Deletion	Chr8	24235475	24235480	5
Deletion	Chr8	26456767	26456772	5
Deletion	Chr7	26985509	26985515	6
Deletion	Chr7	27317505	27317518	13
Deletion	Chr6	27540693	27540694	1
Deletion	Chr11	29318363	29318454	91
Deletion	Chr2	29915322	29915323	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4832799	5214538
Inversion	Chr12	4832802	5214554
Inversion	Chr1	29202426	29383674	OsKitaake01g287600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes