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Mutant Information

Mutant Name	FN3183-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3183-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2029061 G-A Hetero UTR_3_PRIME
SBS Chr1 28767106 A-G Hetero INTRON
SBS Chr3 5186386 T-A Hetero INTERGENIC
SBS Chr3 6790094 G-C Hetero INTERGENIC
SBS Chr3 10556232 C-T Hetero INTERGENIC
SBS Chr4 3284886 G-T Homo INTERGENIC
SBS Chr4 8359600 C-A Hetero INTERGENIC
SBS Chr4 9377631 G-A Hetero INTERGENIC
SBS Chr4 14603063 C-T Homo INTERGENIC
SBS Chr4 24911898 G-T Hetero INTERGENIC
SBS Chr5 3467561 C-T Homo INTERGENIC
SBS Chr5 15266751 C-T Homo INTERGENIC
SBS Chr5 18702472 G-A Hetero INTERGENIC
SBS Chr6 3725161 A-T Hetero INTERGENIC
SBS Chr6 10970178 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 16340243 T-C Hetero INTRON
SBS Chr6 22798996 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 23245201 A-T Hetero INTERGENIC
SBS Chr7 13380926 C-T Hetero INTERGENIC
SBS Chr8 1487288 A-C Hetero INTERGENIC
SBS Chr8 2675157 C-A Hetero INTERGENIC
SBS Chr8 13240493 C-T Hetero INTERGENIC
SBS Chr8 13615658 G-A Homo INTERGENIC
SBS Chr8 17641582 G-A Homo INTERGENIC
SBS Chr8 20454226 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g151700
SBS Chr9 953094 G-A Homo UTR_3_PRIME
SBS Chr9 7648068 G-C Homo INTRON
SBS Chr9 12596281 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 17755836 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g134600
SBS Chr9 17755837 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g134600
SBS Chr9 20804278 C-T Hetero INTERGENIC
SBS Chr9 21590937 T-A Hetero INTERGENIC
SBS Chr11 9187704 A-T Hetero INTERGENIC
SBS Chr11 17648833 C-T Hetero INTERGENIC
SBS Chr11 26466204 G-A Homo INTERGENIC
SBS Chr12 2276622 A-G Hetero UTR_3_PRIME
SBS Chr12 14783972 C-T Homo INTERGENIC
SBS Chr12 15325131 C-T Hetero INTERGENIC
SBS Chr12 17204526 C-T Hetero INTERGENIC
SBS Chr12 18091336 A-T Hetero INTERGENIC
SBS Chr12 20491120 A-C Hetero INTERGENIC
SBS Chr12 20717500 C-T Hetero UTR_3_PRIME

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4685903 4685927 24
Deletion Chr5 6851115 6851116 1
Deletion Chr1 7522515 7522519 4
Deletion Chr1 10116955 10116956 1
Deletion Chr9 12404580 12404581 1
Deletion Chr9 12838873 12838877 4 OsKitaake09g085100
Deletion Chr3 17061652 17061653 1
Deletion Chr10 18582162 18582163 1
Deletion Chr1 23979225 23979227 2
Deletion Chr11 26588757 26588758 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28036154 28036157 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 9514795 9968576 OsKitaake01g126200
Inversion Chr1 9514801 9968587 OsKitaake01g126200
Inversion Chr1 19993125 20031078
Inversion Chr1 24877603 24974194
Inversion Chr1 24877612 24974285

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 4077859 Chr1 20031079
Translocation Chr9 4080646 Chr1 21147452

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2029061	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	28767106	A-G	Hetero	INTRON
SBS	Chr3	5186386	T-A	Hetero	INTERGENIC
SBS	Chr3	6790094	G-C	Hetero	INTERGENIC
SBS	Chr3	10556232	C-T	Hetero	INTERGENIC
SBS	Chr4	3284886	G-T	Homo	INTERGENIC
SBS	Chr4	8359600	C-A	Hetero	INTERGENIC
SBS	Chr4	9377631	G-A	Hetero	INTERGENIC
SBS	Chr4	14603063	C-T	Homo	INTERGENIC
SBS	Chr4	24911898	G-T	Hetero	INTERGENIC
SBS	Chr5	3467561	C-T	Homo	INTERGENIC
SBS	Chr5	15266751	C-T	Homo	INTERGENIC
SBS	Chr5	18702472	G-A	Hetero	INTERGENIC
SBS	Chr6	3725161	A-T	Hetero	INTERGENIC
SBS	Chr6	10970178	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	16340243	T-C	Hetero	INTRON
SBS	Chr6	22798996	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	23245201	A-T	Hetero	INTERGENIC
SBS	Chr7	13380926	C-T	Hetero	INTERGENIC
SBS	Chr8	1487288	A-C	Hetero	INTERGENIC
SBS	Chr8	2675157	C-A	Hetero	INTERGENIC
SBS	Chr8	13240493	C-T	Hetero	INTERGENIC
SBS	Chr8	13615658	G-A	Homo	INTERGENIC
SBS	Chr8	17641582	G-A	Homo	INTERGENIC
SBS	Chr8	20454226	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g151700
SBS	Chr9	953094	G-A	Homo	UTR_3_PRIME
SBS	Chr9	7648068	G-C	Homo	INTRON
SBS	Chr9	12596281	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17755836	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g134600
SBS	Chr9	17755837	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g134600
SBS	Chr9	20804278	C-T	Hetero	INTERGENIC
SBS	Chr9	21590937	T-A	Hetero	INTERGENIC
SBS	Chr11	9187704	A-T	Hetero	INTERGENIC
SBS	Chr11	17648833	C-T	Hetero	INTERGENIC
SBS	Chr11	26466204	G-A	Homo	INTERGENIC
SBS	Chr12	2276622	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	14783972	C-T	Homo	INTERGENIC
SBS	Chr12	15325131	C-T	Hetero	INTERGENIC
SBS	Chr12	17204526	C-T	Hetero	INTERGENIC
SBS	Chr12	18091336	A-T	Hetero	INTERGENIC
SBS	Chr12	20491120	A-C	Hetero	INTERGENIC
SBS	Chr12	20717500	C-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4685903	4685927	24
Deletion	Chr5	6851115	6851116	1
Deletion	Chr1	7522515	7522519	4
Deletion	Chr1	10116955	10116956	1
Deletion	Chr9	12404580	12404581	1
Deletion	Chr9	12838873	12838877	4	OsKitaake09g085100
Deletion	Chr3	17061652	17061653	1
Deletion	Chr10	18582162	18582163	1
Deletion	Chr1	23979225	23979227	2
Deletion	Chr11	26588757	26588758	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9514795	9968576	OsKitaake01g126200
Inversion	Chr1	9514801	9968587	OsKitaake01g126200
Inversion	Chr1	19993125	20031078
Inversion	Chr1	24877603	24974194
Inversion	Chr1	24877612	24974285

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes